BAC Information

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BAC

Clone NameB6Ng01-126A06
Chromosome6 (Build37)
Map Location 81,710,167 - 81,851,639
singlet/doubletdoublet
Overlap geneLOC232143, 1700009C05Rik
Upstream geneLOC100042991
Downstream geneAW146020, Mrpl19, Tmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126A06.bB6Ng01-126A06.g
ACCDH928494DH928495
length1,151628
definitionDH928494|Mus musculus domesticus DNA, BAC clone: B6Ng01-126A06, 5' end.DH928495|Mus musculus domesticus DNA, BAC clone: B6Ng01-126A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,710,167 - 81,711,333)(81,851,015 - 81,851,639)
sequence
gaattccatccaccttcttttgccatcaggatttgcaatgggaatggcat
acaccatttaaagtatctggctttttcatgcagaccttccctatcccagt
acagcaaccagatggctccgtgcctgccccttttcttgccagcacacaat
ccaggtgctgagcacaagaggcattgaataaatgatgagaccaagtttta
cctgaaagctggctgtgtcctatttgcataggcataatgtcacattcatt
attcatgagcatatgctataatggccctccccttccagctcagtcctttg
ctgcttctgactctcggatgtgcaagataaaccatctctcctgcagcttg
cagcaatttctcctttctgggtacacagcagagtgacggctctatttttt
atgcaagtgtgcctccttagatgcataacatttacaacctcccataaaat
aaacggaaggttttgatactgaatgtcgaaagcatattgggtcaacaaca
acaacaaaaaaaatatatattaaggagcagccaacaactccccacagaat
tctagtgaaggaaagaactagtctacctatagctataagaagtaaaatag
gaaggtgtgttgtaggtctgttgtaggtcatagagcaaagctttacctaa
ctgaaaaatctctctgcctgggagctggtgagatggagagatggatgagc
aattaaggagcttcccacaaaacctggtgatctgagttcgatcccaggac
ctgcgtgggggaaaataagaactgactccctgcaagttattctctgacct
acacacacacacacacacacacacacacacacacaaatctctttctaaac
agagatgctgattacttttatgtgtcaatgcgactgggataaataatgct
cagggttctgataaagcattgtttctggatgtcatggtttgaatcctaat
gtatgcccgccataagctcagtttgaatacttggtccccatcttgctgta
tattttgaagcctgtgagccttaaaaggggagtcgactgctagaaaaaaa
tcactaagggctttctttgctcctgttctgtcccagctgaacagctacca
catttgcttctgcatccttgtcctcacatgacagctgcaaggcctcactt
t
gaattctctggtttctacccttggctgatgtgggtaattttgacaggtgc
ctaacagttgtcctgttacgtgtttatatttgctgtctcaaatggaggtt
gggcttctgagactgaggcaggacgatcatgggttcaaggcaataaactc
tttgagaaaaacaaaaatacgttggggagctatctgagtgagtttatcat
gcgagcctgaacatttgcgttgaagccccattacccataggaaagaaggg
ctacccggacagtgtttgtcattgcacctagaaagctttaaacatgaagg
aagatctgcagctgattggacactacattccttgtgctccagggcattga
gagacatttgtctccagaagcaagctggatggctcccgagaagaactctc
acgggtgattctgggcctttgcctgagtgtgcgcgcatacacacttacat
tcacacatccagaagaatgtgctcacacagactaaatgcagcacacgcat
gcatgggactacaatgtcccgctagctgtgcctaagcatagttcatcctt
tctaaagctgaaagtcggcgaacaatttaacattactctccttcatcccc
aacttcaaagctcccagactactttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_81710167_81711333
seq2: B6Ng01-126A06.b_44_1194

seq1  GAATTCCATCCACCTTCTTTTGCCATCAGGATTTGCAATGGGAATGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCACCTTCTTTTGCCATCAGGATTTGCAATGGGAATGGCAT  50

seq1  ACACCATTTAAAGTATCTGGCTTTTTCATGCAGACCTTCCCTATCCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTTAAAGTATCTGGCTTTTTCATGCAGACCTTCCCTATCCCAGT  100

seq1  ACAGCAACCAGATGGCTCCGTGCCTGCCCCTTTTCTTGCCAACACACAAT  150
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACAGCAACCAGATGGCTCCGTGCCTGCCCCTTTTCTTGCCAGCACACAAT  150

seq1  CCAGGTGCTGAGCACAAGAGGCATTGAATAAATGATGAGACCAAGTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGCTGAGCACAAGAGGCATTGAATAAATGATGAGACCAAGTTTTA  200

seq1  GCTTAGAGCTGGCTGTGTCCTATTTGCATAGGCATAATGTCAGATTCATT  250
       || | |||||||||||||||||||||||||||||||||||| |||||||
seq2  CCTGAAAGCTGGCTGTGTCCTATTTGCATAGGCATAATGTCACATTCATT  250

seq1  ATTCATGAGCATATGCTATAATGGCCCTCCCCTTCCAGCTCAGTCCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAGCATATGCTATAATGGCCCTCCCCTTCCAGCTCAGTCCTTTG  300

seq1  CTGCTTCTGACTCTCAGATGTGCAAGATAAACCATCTCTCCTGCAGCTTG  350
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTGACTCTCGGATGTGCAAGATAAACCATCTCTCCTGCAGCTTG  350

seq1  CAGCAATTTCTCCTTTCTGGGTACACAGCAGAGTGACGGCTCTATTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTTCTCCTTTCTGGGTACACAGCAGAGTGACGGCTCTATTTTTT  400

seq1  ATGCAAGTGTGCCTCCTTAGATGCATAACATTTACAACCTCCCATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGTGTGCCTCCTTAGATGCATAACATTTACAACCTCCCATAAAAT  450

seq1  AAACGGAAGGTTTTGATACTGAATGTCGAAAGCATATTGGGTCAACAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGAAGGTTTTGATACTGAATGTCGAAAGCATATTGGGTCAACAACA  500

seq1  ACAACAAAAAAAATATATATTAAGGAGCAGCCAACAACTCCCCACAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAAAAATATATATTAAGGAGCAGCCAACAACTCCCCACAGAAT  550

seq1  TCTAGTGAAGGAAAGAACTAGTCTACCTATAGCTATAAGAAGTAAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGAAGGAAAGAACTAGTCTACCTATAGCTATAAGAAGTAAAATAG  600

seq1  GAAGGTGTGTTGTAGGTCTGTTGTAGGTCATAGAGCAAAGCTTTACCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTGTTGTAGGTCTGTTGTAGGTCATAGAGCAAAGCTTTACCTAA  650

seq1  CTGAAAAATCTCTCTGCCTGGGAGCTGGTGAGATGGAGAGATGGATGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAATCTCTCTGCCTGGGAGCTGGTGAGATGGAGAGATGGATGAGC  700

seq1  AATTAAGGAGCTTCCCACAAAACCTGGTGATCTGAGTTCGATCCCAGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGGAGCTTCCCACAAAACCTGGTGATCTGAGTTCGATCCCAGGAC  750

seq1  CTGCGTGGGGGAAAATAAGAACTGACT-CCTGCAAGTTATTCTCTGACCT  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGCGTGGGGGAAAATAAGAACTGACTCCCTGCAAGTTATTCTCTGACCT  800

seq1  ACACACACACACACACACACACACACACACACACAAATCTCTTTCTAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACAAATCTCTTTCTAAAC  850

seq1  AGAGATGCTGATTACTTTTATGTGTCAATGCGACTGGGATAAATAATGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCTGATTACTTTTATGTGTCAATGCGACTGGGATAAATAATGCT  900

seq1  CAGGG-TCTGATAAAGCATTGTTTCTGGATGTCATGGTTTGAATCCTAAA  948
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGGGTTCTGATAAAGCATTGTTTCTGGATGTCATGGTTTGAATCCT-AA  949

seq1  TGTATGCCCGCCATAAGCTCAGGTTTTGAATACTTGGTCCCCATCTTGCT  998
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  TGTATGCCCGCCATAAGCTCAG--TTTGAATACTTGGTCCCCATCTTGCT  997

seq1  GTATTATTTTGAAGCCTGTGGAGCCTTTAAAAGGTGGAGTCCGACTGCTA  1048
      ||| ||||||||||||||| ||||| |||||||| ||||| |||||||||
seq2  GTA-TATTTTGAAGCCTGT-GAGCC-TTAAAAGG-GGAGT-CGACTGCTA  1042

seq1  GAAAAACATCACTAAGGGCTTTCTCTGCTCCCTGTTCTGTCACCAGCTGA  1098
      |||||| ||||||||||||||||| |||| ||||||||||| ||||||||
seq2  GAAAAAAATCACTAAGGGCTTTCTTTGCT-CCTGTTCTGTC-CCAGCTGA  1090

seq1  ACAAGCTACCACCATATGCTTCTGCCATCCTGTGTCCTCACCATGGACCA  1148
      || |||||||| ||| |||||||| |||||| |||||||| ||| |||  
seq2  AC-AGCTACCA-CATTTGCTTCTG-CATCCT-TGTCCTCA-CAT-GAC--  1132

seq1  AGCTGCAGGGCCTCACTTT  1167
      ||||||| |||||||||||
seq2  AGCTGCAAGGCCTCACTTT  1151

seq1: chr6_81851015_81851639
seq2: B6Ng01-126A06.g_67_694 (reverse)

seq1  CTGAAAGTAGTCCTGGGAGCTGTGAAG-TGGGGA-GAAGGAGAGTAATGT  48
      ||||||||||| ||||||||| ||||| |||||| |||||||||||||||
seq2  CTGAAAGTAGT-CTGGGAGCTTTGAAGTTGGGGATGAAGGAGAGTAATGT  49

seq1  TAAA-TGGTCACAGACTTTCAG-TTTAG-AAGGATGAACTATGCTTAGGC  95
      |||| || || | ||||||||| ||||| |||||||||||||||||||||
seq2  TAAATTGTTCGCCGACTTTCAGCTTTAGAAAGGATGAACTATGCTTAGGC  99

seq1  ACAGCTAACGGGACATTGTAGTCCCATTCATGCCTCTGCTGCATCTAGTC  145
      ||||||| ||||||||||||||||||| ||||| | |||||||| |||||
seq2  ACAGCTAGCGGGACATTGTAGTCCCATGCATGCGTGTGCTGCATTTAGTC  149

seq1  TGTGTGAGCACATTCCTCTGGATGTGTGAATGTAAGTGTGTATGTGTGCA  195
      ||||||||||||||| |||||||||||||||||||||||||||| | |||
seq2  TGTGTGAGCACATTCTTCTGGATGTGTGAATGTAAGTGTGTATGCGCGCA  199

seq1  CACTCAGGTAAAGGCCTAGAATCACCCCTGAGAGTTCTTCTCGGGAGCCA  245
      |||||||| ||||||| |||||||||| ||||||||||||||||||||||
seq2  CACTCAGGCAAAGGCCCAGAATCACCCGTGAGAGTTCTTCTCGGGAGCCA  249

seq1  TCCAGCTTGCTTCTGGAGACAAATGTCTCTCAATGACCTGGAGCACAAGG  295
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCAGCTTGCTTCTGGAGACAAATGTCTCTCAATGCCCTGGAGCACAAGG  299

seq1  AATGTAGTGTCCAATCAGCTGCAGATCTTCCTTCCTGTTTAAAGCTTTCT  345
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATGTAGTGTCCAATCAGCTGCAGATCTTCCTTCATGTTTAAAGCTTTCT  349

seq1  AGTTGCACTGACAAACACTGTCCGGGTAGCCCTTCTTTCCTATGGGTAAT  395
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCAATGACAAACACTGTCCGGGTAGCCCTTCTTTCCTATGGGTAAT  399

seq1  GGGGCTTCAACGCAAATGCTCAGGCTTGCATGATAAACTTACTCAGATAG  445
      |||||||||||||||||| ||||||| |||||||||||| ||||||||||
seq2  GGGGCTTCAACGCAAATGTTCAGGCTCGCATGATAAACTCACTCAGATAG  449

seq1  CTCCCCAACCTATTTTTGTTTTTCTCAAAGAGTCTATTGCCTTGAACCCA  495
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  CTCCCCAACGTATTTTTGTTTTTCTCAAAGAGTTTATTGCCTTGAACCCA  499

seq1  TGATCGTCCTGCCTCAGTCTCAGAAGCCCAACCTCCATTTGAGACAGCAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCGTCCTGCCTCAGTCTCAGAAGCCCAACCTCCATTTGAGACAGCAA  549

seq1  ATATAAACACGTAACAGGACAACTGTTAGGTTACCTGTCAAAATTACCCA  595
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  ATATAAACACGTAACAGGACAACTGTTAGG-CACCTGTCAAAATTACCCA  598

seq1  CATCAGCCAAGGGTAGAAACCACTGAATTC  625
      ||||||||||||||||||||||  ||||||
seq2  CATCAGCCAAGGGTAGAAACCAGAGAATTC  628