BAC Information

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BAC

Clone NameB6Ng01-126H18
Chromosome6 (Build37)9 (Build37)
Map Location 18,835,442 - 18,835,96897,335,341 - 97,336,461
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126H18.bB6Ng01-126H18.g
ACCDH928844DH928845
length1,0221,101
definitionDH928844|Mus musculus domesticus DNA, BAC clone: B6Ng01-126H18, 5' end.DH928845|Mus musculus domesticus DNA, BAC clone: B6Ng01-126H18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(97,335,341 - 97,336,461)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgccttttgccttgcagaagctttggagtttca
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagttttgaccttagtacaaggagataggtatggatcgattcac
attcttctatatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctgtataccagaccatgcagtttttaccacaattgct
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
atttgcaaattgcttcttctaattcgttgaagaattgggttggaattttg
atggggattgcattgaaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagttcttatcata
cagatctttcacttccttagttagagtcacgccgagatattttatattat
ttgtgaatattgagaaaggtgttgtttccctaatttcttcctcagcctgt
ttattctttgtgtagagaaagg
gaattccttcttgacaatctctagagaaactttcaagtgttcatgaatga
atgacataacatgaaatgctatgtcaaggggcctgggcagataggtagta
agtacatagagtgggctgtgcagtggagttgagtgagaaggtgctagact
gacaaactggcagttctccatgtcctgctgtctcttctttcaagactcgg
gtactcatttttccagcttctaagaatgtccacctggcttctctgtattt
gacctgattccctctgttcttcccaatgttcaattctgaggaaattgcca
ataaactgactccatgcctatctctacatcagagtcaaggaaagcccaac
ataagacacagcaacatgggggtatcatgtaagcatatttacaaagaaag
aaaaaaattgagtgatagaaggatttctaaccaactaatgttactataag
ttaataagtacacatgaaactatacatgttctaaaaatgtatacatataa
aagactatcaatacaccaaagaaatgactaggcaagggagaccaggcaag
taagaatgggtcctttaagagagaccacttatgacaatggaacatgaatc
aagagccacagccaataaatcctgttgcaactgagatggaaattggtaca
aattttagttgatgaaataaatggcaggtatttcaggacacagagctgta
ttcagagacagcaagggttttccacaatctttatgtcacatttttaacac
aaaataagaaagcaagcactgcaatccccttgcttttagaatgatctaga
gcttcactcagcccatgaacctctgtttccagcatagcacagctttcaga
ctgtctagtcctgagaacacagtattcttcagtctgtcccacatgtctca
ttagagcaggtacaatagtttgcatcctttttttagactgctgtggcttt
aaagaattagtctggacttgtatatgtgaatattctttagcaaactatga
ctagaagagtggctccatgctctaatgtcaacaagcagcattgctagtac
agaagagctgttctctggtaagacttaagtcagctggtggcaccacagct
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-126H18.b_50_577 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAATGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| | ||||||||||||||||||||||||| |||||
seq2  ACAACTGGTTGTTATCATATAGAAGAATGTGAATCGATCCATACCTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAAACTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| |||||||| |||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| |||||||||||||| |||||||||||||| ||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTCATGAAACTCCAAAGCTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  GGCAAAAGGCACCGTCAATAAGACAAAGAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr9_97335341_97336461
seq2: B6Ng01-126H18.g_68_1168 (reverse)

seq1  CAGCTGTTGCTGCCACCCAGCTGACTTAAGTCTCTAACAGAGACCAGCTT  50
      |||||| || ||||| ||||||||||||||||| || |||||| |||| |
seq2  CAGCTG-TGGTGCCA-CCAGCTGACTTAAGTCT-TACCAGAGAACAGC-T  46

seq1  CTTCTGTTACTAGCAAATGCTGCTTGTGTTTGACATTTAGAGGCATGGAG  100
      |||||| ||||||| |||||||||||   |||||| ||||| ||||||||
seq2  CTTCTG-TACTAGC-AATGCTGCTTG---TTGACA-TTAGA-GCATGGAG  89

seq1  CCACATCTCTCTAGTCCATAGTTTTGCTAAAGAAATATCACAATTATACA  150
      |||| ||| |||||| ||||| ||||||||||||   |||||  ||||||
seq2  CCAC-TCT-TCTAGT-CATAG-TTTGCTAAAGAATATTCACA--TATACA  133

seq1  AGTTCCAGACTAATTCTGTTAAAAGCACAGCAGTCATAAAAACAGAAATG  200
      || |||||||||||||| |||||  |||||||||| |||||| ||  |||
seq2  AG-TCCAGACTAATTCT-TTAAAGCCACAGCAGTC-TAAAAAAAG-GATG  179

seq1  CAAACTATTGTACCTGCTCTAATGAGACATGTGGGACAGACTGAAGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTATTGTACCTGCTCTAATGAGACATGTGGGACAGACTGAAGAATA  229

seq1  CTGTG-TCTCAGGACTAGACAGTCTGAAAGCTGTGCTATGCTGGAAACAG  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCTCAGGACTAGACAGTCTGAAAGCTGTGCTATGCTGGAAACAG  279

seq1  AGGTTCATGGGCTGAGTGAAGCTCTAGATCATTCTAAAAGCAAGGGGATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCATGGGCTGAGTGAAGCTCTAGATCATTCTAAAAGCAAGGGGATT  329

seq1  GCAGTGCTTGCTTTCTTATTTTGTGTTAAAAATGTTGACATAAAGATTGT  399
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCAGTGCTTGCTTTCTTATTTTGTGTTAAAAATG-TGACATAAAGATTGT  378

seq1  GG-AAACCCTTGCTGTCTCTGAATACAGCTCTGTGTCCTGAAATACCTGC  448
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCCTTGCTGTCTCTGAATACAGCTCTGTGTCCTGAAATACCTGC  428

seq1  CATTTATTTCATCAACTAAAATTTGTACCAATTTCCATCTCAGTTGCAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTCATCAACTAAAATTTGTACCAATTTCCATCTCAGTTGCAAC  478

seq1  AGGATTTATTGGCTGTGGCTCTTGATTCATGTTCCATTGTCATAAGTGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTATTGGCTGTGGCTCTTGATTCATGTTCCATTGTCATAAGTGGT  528

seq1  CTCTCTTAAAGGACCCATTCTTACTTGCCTGGTCTCCCTTGCCTAGTCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTAAAGGACCCATTCTTACTTGCCTGGTCTCCCTTGCCTAGTCAT  578

seq1  TTCTTTGGTGTATTGATAGTCTTTTATATGTATACATTTTTAGAACATGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGTGTATTGATAGTCTTTTATATGTATACATTTTTAGAACATGT  628

seq1  ATAGTTTCATGTGTACTTATTAACTTATAGTAACATTAGTTGGTTAGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCATGTGTACTTATTAACTTATAGTAACATTAGTTGGTTAGAAA  678

seq1  TCCTTCTATCACTCAATTTTTTTCTTTCTTTGTAAATATGCTTACATGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTATCACTCAATTTTTTTCTTTCTTTGTAAATATGCTTACATGAT  728

seq1  ACCCCCATGTTGCTGTGTCTTATGTTGGGCTTTCCTTGACTCTGATGTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCATGTTGCTGTGTCTTATGTTGGGCTTTCCTTGACTCTGATGTAG  778

seq1  AGATAGGCATGGAGTCAGTTTATTGGCAATTTCCTCAGAATTGAACATTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGCATGGAGTCAGTTTATTGGCAATTTCCTCAGAATTGAACATTG  828

seq1  GGAAGAACAGAGGGAATCAGGTCAAATACAGAGAAGCCAGGTGGACATTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACAGAGGGAATCAGGTCAAATACAGAGAAGCCAGGTGGACATTC  878

seq1  TTAGAAGCTGGAAAAATGAGTACCCGAGTCTTGAAAGAAGAGACAGCAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGCTGGAAAAATGAGTACCCGAGTCTTGAAAGAAGAGACAGCAGG  928

seq1  ACATGGAGAACTGCCAGTTTGTCAGTCTAGCACCTTCTCACTCAACTCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGAACTGCCAGTTTGTCAGTCTAGCACCTTCTCACTCAACTCCA  978

seq1  CTGCACAGCCCACTCTATGTACTTACTACCTATCTGCCCAGGCCCCTTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGCCCACTCTATGTACTTACTACCTATCTGCCCAGGCCCCTTGA  1028

seq1  CATAGCATTTCATGTTATGTCATTCATTCATGAACACTTGAAAGTTTCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCATTTCATGTTATGTCATTCATTCATGAACACTTGAAAGTTTCTC  1078

seq1  TAGAGATTGTCAAGAAGGAATTC  1121
      |||||||||||||||||||||||
seq2  TAGAGATTGTCAAGAAGGAATTC  1101