BAC Information

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BAC

Clone NameB6Ng01-126H23
Chromosome6 (Build37)3 (Build37)
Map Location 18,835,452 - 18,835,96899,557,869 - 99,558,871
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126H23.bB6Ng01-126H23.g
ACCDH928854DH928855
length979980
definitionDH928854|Mus musculus domesticus DNA, BAC clone: B6Ng01-126H23, 5' end.DH928855|Mus musculus domesticus DNA, BAC clone: B6Ng01-126H23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,452 - 18,835,968)(99,557,869 - 99,558,871)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagttttatcatac
agatctttcacctccttagttagagtcacgccaagatattttatattatt
gtgactattgagaacggtgttgtttccct
gaattcctcagtgcaggctgtcaagaaaactgggcagcaccttttaaaag
aatagtatcattgaattttaaacctctagttgtataaagaaaagtcaagt
aaactgaaaagattattaaaaaaataaatcaggggaaacaaaagtttata
gacaaaaataaaataaaataaaatgaaaaagacacaacatacaaaatata
aaaaccaccaaccatctgttaatcaatgacaaaacaattattgctttggg
gttatattgaacttgtgtagagaaagatggggaatgtttagttaggtatg
tttcaaacgaaaaatacataatcaataattctattgtaacttccttttgt
gtaattattttattctgtttttgaaaaatatgtttttgcagtgatttaaa
gaatatgtaacttatggctatgaggtaattttctttctatatatgaactt
tatctcagatggtataaaaacctctaagcagaaaaataaacttggtggag
ttttgttgtatccatcgaaaccccccaaaacaagcaagcaagcaaacaaa
caaacaaacaaaaacaaaaccccaactttccaaaaccaaacttacaatat
gcaaggaacctgaacaaaatgaaaatatcagcaggtaagatgaaaaaaga
ggaagagttggaaccatgccacatctgagacttcttctggactgttgaac
tatttctcccttgggattaagaccaaaagaggctgtatatcaattgttgc
tttcttagttcttgtttaggaatggtactttgcccttttggttcatccaa
tttttgttgtgttgttgttataggacatcatgaagcctgacttcagtgtc
agagtagcacagaaatgtggacttctcaacaaactcaactgcttagttga
ctttagtctatgatggtaatgctatgtggttgaaaaaagattatctattg
actctgaactaaaaaatttcttgaagcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835452_18835968
seq2: B6Ng01-126H23.b_51_568 (reverse)

seq1  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50

seq1  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100

seq1  GTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGTACTA  150
      |||||| |||||||||||| |||||||||||||||||||||| |||||||
seq2  GTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTA  150

seq1  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  200

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAGG  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  250

seq1  GGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAGAGAA  299
      |||||| ||||||||||||||||||||||| |||||||| || | |||||
seq2  GGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA  300

seq1  TCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  350

seq1  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  400

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  450

seq1  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGGCTCA  499
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  500

seq1  GAACTGAACAAAGAATTC  517
      ||||||||||||||||||
seq2  GAACTGAACAAAGAATTC  518

seq1: chr3_99557869_99558871
seq2: B6Ng01-126H23.g_67_1046 (reverse)

seq1  CTTGCTTCAAAGGAAATTTTTTTATGTTCAGAGTCAAATAGATAATCTTT  50
      ||||||||||  ||||||||||   |||||||||| ||||||||||||||
seq2  CTTGCTTCAA--GAAATTTTTT--AGTTCAGAGTC-AATAGATAATCTTT  45

seq1  TCTCAAACACATTAGCAATTTAACCATCCATAGACTATAAGTCAAACTAA  100
      | |||| |||| |||||   | ||||| ||||||||| ||||| ||||||
seq2  TTTCAACCACA-TAGCA---TTACCAT-CATAGACTA-AAGTC-AACTAA  88

seq1  GCAGGTTGGAGTTTGGTTGAGAAGTCCACATTTCTGTTGCTACTCTGGAC  150
      ||||  | |||||| ||||||||||||||||||||| ||||||||| |||
seq2  GCAG--TTGAGTTT-GTTGAGAAGTCCACATTTCTG-TGCTACTCT-GAC  133

seq1  ACTGAAGTCAGGCTTCATGATTGTCTTATAAACAACAACAACAACAAAAA  200
      |||||||||||||||||||| |||| ||| ||||||||| ||||||||||
seq2  ACTGAAGTCAGGCTTCATGA-TGTCCTAT-AACAACAAC-ACAACAAAAA  180

seq1  TTGGATGAAACCAAAAGGGCAAAAGTACCATTCCTAAACAAGAACTAAGA  250
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  TTGGATG-AACCAAAAGGGC-AAAGTACCATTCCTAAACAAGAACTAAGA  228

seq1  AAGCAACAATTGATATACAGCCTCTTTTTGGTCTTAATCCCAAGGGAGAA  300
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGCAACAATTGATATACAGCCTC-TTTTGGTCTTAATCCCAAGGGAGAA  277

seq1  ATAGTTCAACAGTCCAGAAGAAGTCTCAGATGTGGCATGGTTCCAACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCAACAGTCCAGAAGAAGTCTCAGATGTGGCATGGTTCCAACTCT  327

seq1  TCCTCTTTTTTCATCTTACCTGCTGATATTTTCATTTTGTTCAGGTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTTTTCATCTTACCTGCTGATATTTTCATTTTGTTCAGGTTCCT  377

seq1  TGCATATTGTAAGTTTGGTTTTGGAAAGTTGGGGTTTTGTTTTTGTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATTGTAAGTTTGGTTTTGGAAAGTTGGGGTTTTGTTTTTGTTTGT  427

seq1  TTGTTTGTTTGCTTGCTTGCTTGTTTTGGGGGGTTTCGATGGATACAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGCTTGCTTGCTTGTTTTGGGGGGTTTCGATGGATACAACA  477

seq1  AAACTCCACCAAGTTTATTTTTCTGCTTAGAGGTTTTTATACCATCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCACCAAGTTTATTTTTCTGCTTAGAGGTTTTTATACCATCTGAG  527

seq1  ATAAAGTTCATATATAGAAAGAAAATTACCTCATAGCCATAAGTTACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTCATATATAGAAAGAAAATTACCTCATAGCCATAAGTTACATA  577

seq1  TTCTTTAAATCACTGCAAAAACATATTTTTCAAAAACAGAATAAAATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAATCACTGCAAAAACATATTTTTCAAAAACAGAATAAAATAAT  627

seq1  TACACAAAAGGAAGTTACAATAGAATTATTGATTATGTATTTTTCGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAAAGGAAGTTACAATAGAATTATTGATTATGTATTTTTCGTTTG  677

seq1  AAACATACCTAACTAAACATTCCCCATCTTTCTCTACACAAGTTCAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATACCTAACTAAACATTCCCCATCTTTCTCTACACAAGTTCAATAT  727

seq1  AACCCCAAAGCAATAATTGTTTTGTCATTGATTAACAGATGGTTGGTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAAGCAATAATTGTTTTGTCATTGATTAACAGATGGTTGGTGGT  777

seq1  TTTTATATTTTGTATGTTGTGTCTTTTTCATTTTATTTTATTTTATTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTTTGTATGTTGTGTCTTTTTCATTTTATTTTATTTTATTTTT  827

seq1  GTCTATAAACTTTTGTTTCCCCTGATTTATTTTTTTAATAATCTTTTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATAAACTTTTGTTTCCCCTGATTTATTTTTTTAATAATCTTTTCAG  877

seq1  TTTACTTGACTTTTCTTTATACAACTAGAGGTTTAAAATTCAATGATACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGACTTTTCTTTATACAACTAGAGGTTTAAAATTCAATGATACT  927

seq1  ATTCTTTTAAAAGGTGCTGCCCAGTTTTCTTGACAGCCTGCACTGAGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTAAAAGGTGCTGCCCAGTTTTCTTGACAGCCTGCACTGAGGAA  977

seq1  TTC  1003
      |||
seq2  TTC  980