BAC Information

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BAC

Clone NameB6Ng01-127E15
Chromosome6 (Build37)
Map Location 48,427,913 - 48,582,216
singlet/doubletdoublet
Overlap geneSspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703
Upstream geneCul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467
Downstream geneGimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127E15.bB6Ng01-127E15.g
ACCDH929444DH929445
length1,199651
definitionDH929444|Mus musculus domesticus DNA, BAC clone: B6Ng01-127E15, 5' end.DH929445|Mus musculus domesticus DNA, BAC clone: B6Ng01-127E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,581,034 - 48,582,216)(48,427,913 - 48,428,561)
sequence
gaattctttattcccaaacaagaggagaccaggagagcgtcacacttgtg
tggagtagggaaaggatggaagatggactccccagggctgaggtctttag
gctggagtccagaggctcctgaaactgcttggcactctgagagttccatg
agtacgcgagttctaggacgaggtccacagcctccacttaaagggccaca
agcccctgaagcagtcacctgtctagctgggaacgggcatggaagccttc
acgtgctctccatgtcatcagggaagttttgcctcttgagcccagtctgc
catcaacttgctgcaacggtacacaacagtcacaccttgtccttgccctt
caaccaagggctgagccaggctggaggagagaagccacttctccacacag
gtgatgtctgcctccacccccgagctgaggtctaggatcaggaagccaaa
tgaggcttgcccagctgtgacaagtcagatctggggagtcttcccaccaa
ggcatggaatcagcctctaatcccatgctctaccaacacagggcacctcc
agaggtaggacttctgaggagacgtgtcttcaggtcaggaacccaggacc
tacgagactccagttttagtttccatgcccagatgcgccctgcaggttct
gggccatgaggtcctgttggcttcgtatctgttcacagaagcagagacta
tggtcagcacattgtagtagcatggccttgcctaccagcccatctggact
acatgggtacattcacctgacctactcttggtctatctgggaccttaaga
gaaccctcttactaccactcccaacaaaacaccgcccaagtttttagcct
gttgacacccgacatgcccttggggtctgggttactttgagtgactaact
taggatcttgttaaatatttttctgtcactaaaatactagtccataatat
tacaataacccccagggatctcaggcagaagtgattccagaggaggcgca
tggcattgaggtgggacagagagcaaaagcaatgaacagcttcagcaccc
aagcacggtcctagctggaagcaaaggtctcaaggaaatgaaggccaacc
tcaaaagttgcaagctttcttaacttccatattccctgcacctgtccaaa
accaaggataaccggtccaatgtaagctatcacccggcccctggccaca
gaattctgcagtttgaggccatgccgaggtaagagtgggaacctagagtc
tgagacttccttggagaacctatctagggttccttccagaaagaaaccaa
caataccccccaggaccccattagtgatataaggatcctaagaggtgggt
tcccagaggccttgcgagtccattcccttagaaagaccctccctagaggc
cagtccacttcctctctgaaggcaccagttctcctagggtagaggtgacc
ctgcagatgaagttacacaagatgagaaggaaggggtgcgtttggatatc
tgggtttgggagggaggtgtgccgggtatggaagacctgaatgttaccca
taggccctggtgcagcatggagttcctggaccccatgctcagtgccctgt
ggtggtggctaccgaaaccgcactcaaggcagtggcccgcacagccctat
cgagttctctacctgcagcctgcagccctgtgcaggtgagggatgccttg
gggagactctagttctcattcccaccaagctaagacactttaaacaccct
gcccactgcagccctgtcgtttagaacagtatgacctctatggcaacctc
agcaattccccagaactggtgcctctccccatgctagggatcctaaagaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_48581034_48582216
seq2: B6Ng01-127E15.b_47_1245 (reverse)

seq1  TGTGGCCAGGGGCCGGGTGATAGGCTATCATGGGCAGGTTATCACTGGGT  50
      |||||||||||||||||||||||  ||   ||| | |||||||  ||| |
seq2  TGTGGCCAGGGGCCGGGTGATAGCTTACATTGGACCGGTTATCCTTGGTT  50

seq1  TT-GACAGGTGCAGGG-ATAT-GAAGTT-AGGAAGC-TGCGACCTCTGA-  94
      || ||||||||||||| |||| |||||| || |||| ||| || | ||| 
seq2  TTGGACAGGTGCAGGGAATATGGAAGTTAAGAAAGCTTGCAACTTTTGAG  100

seq1  GCTGGCC-TCTGTTCCCTGAG-CCCTTGCTTCCAGCTAGGCCCGTGCTT-  141
      | ||||| ||  |||| |||| || ||||||||||||||| |||||||| 
seq2  GTTGGCCTTCATTTCCTTGAGACCTTTGCTTCCAGCTAGGACCGTGCTTG  150

seq1  GGTGCTGGAGGCTGTTCATTGCTTTTGCTCTCTGTCCCACCTCAATGCCA  191
      |||||| || ||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCT-GAAGCTGTTCATTGCTTTTGCTCTCTGTCCCACCTCAATGCCA  199

seq1  TGCGCCTCCTCTGGAATCACTTCTGCCTGAGATCCCTGGGGGTTATTGTA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCTCCTCTGGAATCACTTCTGCCTGAGATCCCTGGGGGTTATTGTA  249

seq1  ATATTATGGACTAGTA-TTTAGTGACAG-AAAATATTTAACAAGATCCT-  288
      |||||||||||||||| ||||||||||| |||||||||||||||||||| 
seq2  ATATTATGGACTAGTATTTTAGTGACAGAAAAATATTTAACAAGATCCTA  299

seq1  AGTTAGTCACTC-AAGT-ACCCAGACCC--AAGGCATGTCGGGTGTCAAC  334
      |||||||||||| |||| ||||||||||  | ||||||||||||||||||
seq2  AGTTAGTCACTCAAAGTAACCCAGACCCCAAGGGCATGTCGGGTGTCAAC  349

seq1  AGGCT-AAAACTT-GGCGGTGTTTTGTTGGGGAGTGGTAGTAAGAGGGTT  382
      ||||| ||||||| |||||||||||||| |||||||||||||||||||||
seq2  AGGCTAAAAACTTGGGCGGTGTTTTGTT-GGGAGTGGTAGTAAGAGGGTT  398

seq1  CTCTTAAGGTCCCAGATAGACCAAGAGTAGGTCAGGTGAATGTACCCATG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAGGTCCCAGATAGACCAAGAGTAGGTCAGGTGAATGTACCCATG  448

seq1  TAGTCCAGATGGGCTGGTAGGCAAGGCCATGCTACTACAATGTGCTGACC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAGATGGGCTGGTAGGCAAGGCCATGCTACTACAATGTGCTGACC  498

seq1  ATAGTCTCTGCTTCTGTGAACAGATACGAAGCCAACAGGACCTCATGGCC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTCTGCTTCTGTGAACAGATACGAAGCCAACAGGACCTCATGGCC  548

seq1  CAGAACCTGCAGGGCGCATCTGGGCATGGAAACTAAAACTGGAGTCTCGT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCTGCAGGGCGCATCTGGGCATGGAAACTAAAACTGGAGTCTCGT  598

seq1  AGGTCCTGGGTTCCTGACCTGAAGACACGTCTCCTCAGAAGTCCTACCTC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGGGTTCCTGACCTGAAGACACGTCTCCTCAGAAGTCCTACCTC  648

seq1  TGGAGGTGCCCTGTGTTGGTAGAGCATGGGATTAGAGGCTGATTCCATGC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGCCCTGTGTTGGTAGAGCATGGGATTAGAGGCTGATTCCATGC  698

seq1  CTTGGTGGGAAGACTCCCCAGATCTGACTTGTCACAGCTGGGCAAGCCTC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGGAAGACTCCCCAGATCTGACTTGTCACAGCTGGGCAAGCCTC  748

seq1  ATTTGGCTTCCTGATCCTAGACCTCAGCTCGGGGGTGGAGGCAGACATCA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTTCCTGATCCTAGACCTCAGCTCGGGGGTGGAGGCAGACATCA  798

seq1  CCTGTGTGGAGAAGTGGCTTCTCTCCTCCAGCCTGGCTCAGCCCTTGGTT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGGAGAAGTGGCTTCTCTCCTCCAGCCTGGCTCAGCCCTTGGTT  848

seq1  GAAGGGCAAGGACAAGGTGTGACTGTTGTGTACCGTTGCAGCAAGTTGAT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCAAGGACAAGGTGTGACTGTTGTGTACCGTTGCAGCAAGTTGAT  898

seq1  GGCAGACTGGGCTCAAGAGGCAAAACTTCCCTGATGACATGGAGAGCACG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACTGGGCTCAAGAGGCAAAACTTCCCTGATGACATGGAGAGCACG  948

seq1  TGAAGGCTTCCATGCCCGTTCCCAGCTAGACAGGTGACTGCTTCAGGGGC  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTTCCATGCCCGTTCCCAGCTAGACAGGTGACTGCTTCAGGGGC  998

seq1  TTGTGGCCCTTTAAGTGGAGGCTGTGGACCTCGTCCTAGAACTCGCGTAC  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCCCTTTAAGTGGAGGCTGTGGACCTCGTCCTAGAACTCGCGTAC  1048

seq1  TCATGGAACTCTCAGAGTGCCAAGCAGTTTCAGGAGCCTCTGGACTCCAG  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAACTCTCAGAGTGCCAAGCAGTTTCAGGAGCCTCTGGACTCCAG  1098

seq1  CCTAAAGACCTCAGCCCTGGGGAGTCCATCTTCCATCCTTTCCCTACTCC  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGACCTCAGCCCTGGGGAGTCCATCTTCCATCCTTTCCCTACTCC  1148

seq1  ACACAAGTGTGACGCTCTCCTGGTCTCCTCTTGTTTGGGAATAAAGAATT  1182
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTGTGACGCTCTCCTGGTCTCCTCTTGTTTGGGAATAAAGAATT  1198

seq1  C  1183
      |
seq2  C  1199

seq1: chr6_48427913_48428561
seq2: B6Ng01-127E15.g_66_716

seq1  GAATTCTGCAGTTTGAGGCCATGCCGAGGTAAGAGTGGGAACCTAGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGTTTGAGGCCATGCCGAGGTAAGAGTGGGAACCTAGAGTC  50

seq1  TGAGACTTCCTTGGAGAACCTATCTAGGGTTCCTTCCAGAAAGAAACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTTCCTTGGAGAACCTATCTAGGGTTCCTTCCAGAAAGAAACCAA  100

seq1  CAATACCCCCCAGGACCCCATTAGTGATATAAGGATCCTAAGAGGTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCCCCCAGGACCCCATTAGTGATATAAGGATCCTAAGAGGTGGGT  150

seq1  TCCCAGAGGCCTTGCGAGTCCATTCCCTTAGAAAGACCCTCCCTAGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGGCCTTGCGAGTCCATTCCCTTAGAAAGACCCTCCCTAGAGGC  200

seq1  CAGTCCACTTCCTCTCTGAAGGCACCAGTTCTCCTAGGGTAGAGGTGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCACTTCCTCTCTGAAGGCACCAGTTCTCCTAGGGTAGAGGTGACC  250

seq1  CTGCAGATGAAGTTACACAAGATGAGAAGGAAGGGGTGCGTTTGGATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGATGAAGTTACACAAGATGAGAAGGAAGGGGTGCGTTTGGATATC  300

seq1  TGGGTTTGGGAGGGAGGTGTGCCGGGTATGGAAGACCTGAATGTTACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGGGAGGGAGGTGTGCCGGGTATGGAAGACCTGAATGTTACCCA  350

seq1  TAGGCCCTGGTGCAGCATGGAGTTCCTGGACCCCATGCTCAGTGCCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCTGGTGCAGCATGGAGTTCCTGGACCCCATGCTCAGTGCCCTGT  400

seq1  GGTGGTGGCTACCGAAACCGCACTCAAGGCAGTGGCCCGCACAGCCCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGCTACCGAAACCGCACTCAAGGCAGTGGCCCGCACAGCCCTAT  450

seq1  CGAGTTCTCTACCTGCAGCCTGCAGCCCTGTGCAGGTGAGGGATGCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTCTCTACCTGCAGCCTGCAGCCCTGTGCAGGTGAGGGATGCCTTG  500

seq1  GGGAGACTCTAGTTCTCATTCCCACCAAGCTAAGACACTTCAAACACCCT  550
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGGAGACTCTAGTTCTCATTCCCACCAAGCTAAGACACTTTAAACACCCT  550

seq1  GCCCACTGCAGCCCTGTCGCTTAGAACAGTATGACCTCTATGGCAACCTC  600
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCCACTGCAGCCCTGTCGTTTAGAACAGTATGACCTCTATGGCAACCTC  600

seq1  AGCAA-TACCCAGAACTGGTGCCTCT-CCCATGCTA-GGATCCTAGAAGA  647
      ||||| | |||||||||||||||||| ||||||||| |||||||| ||||
seq2  AGCAATTCCCCAGAACTGGTGCCTCTCCCCATGCTAGGGATCCTA-AAGA  649

seq1  AA  649
      ||
seq2  AA  651