BAC Information

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BAC

Clone NameB6Ng01-127E16
Chromosome6 (Build37)
Map Location 34,596,111 - 34,695,129
singlet/doubletdoublet
Overlap geneLOC100039184, Cald1
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm
Downstream geneAgbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127E16.bB6Ng01-127E16.g
ACCDH929446DH929447
length1,228950
definitionDH929446|Mus musculus domesticus DNA, BAC clone: B6Ng01-127E16, 5' end.DH929447|Mus musculus domesticus DNA, BAC clone: B6Ng01-127E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,596,111 - 34,596,955)(34,694,159 - 34,695,129)
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttcagttctttatatatattagatattagtcccc
tatctgatttaggataggtaaagatcatttcccaatctgttggtggcctt
tttgtcttattgacggtgtcttttgtcttacagaagctttgcagttttat
gaggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tattcaggaaattttcccctgtgcccatatctttgaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataggaatggatcaattcgca
ttcttctacacgataaccaccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtgggttcatctcagggtcttcaattctattctattggt
ctacttgtctgtagctataccagtaccatgcagtttttatcacaattgct
ctgtagtacagctttaggtcaggcatggtgattccaccagaggtaaaacc
actgttgacattttcttaggaagcttttcacagcacctcaggctctgctg
tgatgctgtggacctctgcaccaccaagcctgactccctggcctctctcc
tctgtgtggctggctgcaagcagggtgcttgtttttatcacttaatctgc
tacattttaaaattatctcagttttaagaaccaggtccttctgtttagga
tttctgtagcacaagataataactcgtcagcagtaagcttggctattttt
caaagtaaggagagaaagcaaaactccaacacatggaaatgattgatgct
tcaggggctggaagagcttggtacctgatatatattatatattgtgtgta
tcaaattatcaccactttgcagcataaatgtgtggtaaattatgcttctc
tatggaaaagcactacatagatcctgaagaacaagccagccacaatagag
taatgatagaaggtattattagtcatgaaaggatataattctgggaataa
ccacaagagacatggatgtcctaaagcaagcctttgaaggcaattatacc
ccatgctcacccaacccttggaacgtgt
gaattctgtgagtgtcagagattcatactgatgccaccaagtcattcctg
atttggattggtggggcctgagggacttagaggggaagagtgtggcgagt
gtgagagtctacattcatgtcaatatcttctctttggagacatctaagtg
ttctccacaattcacgggttaatgactgctagtcaagggtgacatttcct
atcctctgtcctccctcatacctagacaggacctcgtcaccttctagaca
ggaccaggtaaccaaagaaatgtaagtatgaacaatgtgtccaggacagc
acaattgatcatgtgtgcatgtttgccatctctgttggtgttcagaaggc
tctggttgttaggggttgacagagccatggaggatagaaggacagaaaga
cccctgaggctcactgaggagccagtcaggctgaatcaatgagccccagg
ttcagtgtgagaccctgctttgaaaacaggtggcgaggcaggcctggtgg
catgtacctttaatcccagtgcagaaggcagaggcagacggatctatggg
agtttgaggccagcctgggttacatagcaagattcagagcagccagtaag
taatacacaatgagatccccctctctcaaaatatataataaagtaataaa
aataagattaaaaagtagacagaaaagcactttatcagtaaacaaaaatt
atcacagtgcactagcatacgtgttaaaatatgaaatctcatagcaacaa
cattaacatactaatctagacataatacctcctttgtacagacttcaaga
ataagagcttttctacttttctcaatgggtaaaggctgggctaaccaatg
gtatttttaaaatgaaaaaaaaagggaaaatcaactgatgcatgtcatct
actaatacctcttccagggtgctgacactgcccagaccaggggtcggccc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34596111_34596955
seq2: B6Ng01-127E16.b_443_1273

seq1  GCATTCTTCTACACGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTCTACACGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAA  50

seq1  ATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAA  100

seq1  GTGACCATAGGTGTGTGGGTTCATCTCAGGGTCTTCAATTCTATTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCATAGGTGTGTGGGTTCATCTCAGGGTCTTCAATTCTATTCTATT  150

seq1  GGTCTACTTGTCTGTAGCTATACCAGTACCATGCAGTTTTTATCACAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACTTGTCTGTAGCTATACCAGTACCATGCAGTTTTTATCACAATT  200

seq1  GCTCTGTAGTACAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTAGTACAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTAAA  250

seq1  ACCACTGTTGACATTTTCTTAGGAAGCTTTTCACAGCACCTCAGGCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTTGACATTTTCTTAGGAAGCTTTTCACAGCACCTCAGGCTCTG  300

seq1  CTGTGATGCTGTGGACCTCTGCACCACCAAGCCTGACTCCCTGGCCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATGCTGTGGACCTCTGCACCACCAAGCCTGACTCCCTGGCCTCTC  350

seq1  TCCTCTGTGTGGCTGGCTGCAAGCAGGGTGCTTGTTTTTAATCACTTAAT  400
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCTCTGTGTGGCTGGCTGCAAGCAGGGTGCTTGTTTTT-ATCACTTAAT  399

seq1  CTGCTACATTTTAAAATTATCTCAGTTTTAAGAACCAGGTCCTTCTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACATTTTAAAATTATCTCAGTTTTAAGAACCAGGTCCTTCTGTTT  449

seq1  AGGATTTCTGTAGCACAAGATAATAACTCGTCAGCAGTAAGCTTGGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTCTGTAGCACAAGATAATAACTCGTCAGCAGTAAGCTTGGCTAT  499

seq1  TTTTCAAAGTAAGGAGAGAAAGCAAAAACTCCAACACATGGAAATGATTG  550
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTCAAAGTAAGGAGAGAAAGC-AAAACTCCAACACATGGAAATGATTG  548

seq1  ATGCTTCAGGGGCTGGAAGAGCTTGGTACCTGATTATATAATTATATATT  600
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  ATGCTTCAGGGGCTGGAAGAGCTTGGTACCTGA-TATAT-ATTATATATT  596

seq1  GTGTGTATCAAATTATCA-CACTTTGCAGCATAAATGTGT-GTAAA-TAT  647
      |||||||||||||||||| ||||||||||||||||||||| ||||| |||
seq2  GTGTGTATCAAATTATCACCACTTTGCAGCATAAATGTGTGGTAAATTAT  646

seq1  GCTATCTCTATGGAAAAGCACTAACATAGATCCTG-AGAACAAGCCAGCC  696
      ||| |||||||||||||||||| |||||||||||| ||||||||||||||
seq2  GCT-TCTCTATGGAAAAGCACT-ACATAGATCCTGAAGAACAAGCCAGCC  694

seq1  AACAATAGAGTAAAGGGATAG-ATGTATATATAGTCAATGAAA-GATA-A  743
       ||||||||||||   ||||| | ||||   ||||| |||||| |||| |
seq2  -ACAATAGAGTAA--TGATAGAAGGTATTATTAGTC-ATGAAAGGATATA  740

seq1  ATTCTGGAATAAACCAACAAAGACAAATGAAGGTTTCTAAAAGCCAAGCT  793
      ||||||| |  |||||   |||| | ||| | | | |||||   ||||| 
seq2  ATTCTGGGAATAACCA--CAAGAGACATGGATG-TCCTAAA--GCAAGCC  785

seq1  TTTGAAGGCAATTTATCACCCCCATGCTCACCCACACCCCTTTGAAACGT  843
      ||||||||||| ||||   ||||||||||||||| ||||  ||| |||||
seq2  TTTGAAGGCAA-TTAT--ACCCCATGCTCACCCA-ACCC--TTGGAACGT  829

seq1  GT  845
      ||
seq2  GT  831

seq1: chr6_34694159_34695129
seq2: B6Ng01-127E16.g_71_1020 (reverse)

seq1  GGGCCGACGCCCTTGGTCTGGGCAGTGTCCAGCACCCTGGAAGAGTGATT  50
      |||||||  ||| ||||||||||||||| ||||||||||||||||  |||
seq2  GGGCCGA--CCCCTGGTCTGGGCAGTGT-CAGCACCCTGGAAGAGGTATT  47

seq1  AAGATGATGGACATGCTACAGTTTGGATTTTCCCTTTTTTTTTC-TTTTA  99
       ||  ||| |||||||  |||||  ||||||||||||||||||| |||||
seq2  -AGTAGAT-GACATGCATCAGTT--GATTTTCCCTTTTTTTTTCATTTTA  93

seq1  AAAATAAACATTGGGTTTAG-CCAGCCTTTACCCATTGGAGAAAAGTAGA  148
      ||||| | ||||||  |||| |||||||||||||||| ||||||||||| 
seq2  AAAAT-ACCATTGG--TTAGCCCAGCCTTTACCCATT-GAGAAAAGTAG-  138

seq1  AAAAGCTCTTTATTCTTGGAAGTCTGTACAAAGGAGTTATATTGTCTAGA  198
      |||||||| |||||||| |||||||||||||||||| |||  ||||||||
seq2  AAAAGCTC-TTATTCTT-GAAGTCTGTACAAAGGAGGTATTATGTCTAGA  186

seq1  TTAGTTATGGTAATGTTGTTGCTATGAGAATTTTCATATTTTAACACGGT  248
      |||| |||| |||||||||||||||||||  |||||||||||||||| ||
seq2  TTAG-TATGTTAATGTTGTTGCTATGAGA--TTTCATATTTTAACAC-GT  232

seq1  ATGCTAGTGCACTGTGGATATTTTTGTGTACTGGATAAAGTGC-TTTCTG  297
      ||||||||||||||||   |||||||| |||| |||||||||| ||||||
seq2  ATGCTAGTGCACTGTGATAATTTTTGTTTACT-GATAAAGTGCTTTTCTG  281

seq1  TCTTACTTTTTAATCTTATTTTTATTACTTTTATTATATTATTTTTTGAG  347
      || ||||||||||||||||||||||||| |||||||   ||| |||||||
seq2  TC-TACTTTTTAATCTTATTTTTATTAC-TTTATTA---TATATTTTGAG  326

seq1  AGAGGGGGATCTCATTGTGTATTACTTACTGGCTGCTCTGAATCTTGCTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGGATCTCATTGTGTATTACTTACTGGCTGCTCTGAATCTTGCTA  376

seq1  TGTAAACCAGGCTGGCCTCAAACTCCCATAGATCCGTCTGCCTCTGCCTT  447
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCCAGGCTGGCCTCAAACTCCCATAGATCCGTCTGCCTCTGCCTT  426

seq1  CTGCACTGGGATTAAAGGTACATGCCACCAGGCCTGCCTCGCCACCTGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGGGATTAAAGGTACATGCCACCAGGCCTGCCTCGCCACCTGTT  476

seq1  TTCAAAGCAGGGTCTCACACTGAACCTGGGGCTCATTGATTCAGCCTGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCAGGGTCTCACACTGAACCTGGGGCTCATTGATTCAGCCTGAC  526

seq1  TGGCTCCTCAGTGAGCCTCAGGGGTCTTTCTGTCCTTCTATCCTCCATGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTCAGTGAGCCTCAGGGGTCTTTCTGTCCTTCTATCCTCCATGG  576

seq1  CTCTGTCAACCCCTAACAACCAGAGCCTTCTGAACACCAACAGAGATGGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCAACCCCTAACAACCAGAGCCTTCTGAACACCAACAGAGATGGC  626

seq1  AAACATGCACACATGATCAATTGTGCTGTCCTGGACACATTGTTCATACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCACACATGATCAATTGTGCTGTCCTGGACACATTGTTCATACT  676

seq1  TACATTTCTTTGGTTACCTGGTCCTGTCTAGAAGGTGACGAGGTCCTGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCTTTGGTTACCTGGTCCTGTCTAGAAGGTGACGAGGTCCTGTC  726

seq1  TAGGTATGAGGGAGGACAGAGGATAGGAAATGTCACCCTTGACTAGCAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATGAGGGAGGACAGAGGATAGGAAATGTCACCCTTGACTAGCAGT  776

seq1  CATTAACCCGTGAATTGTGGAGAACACTTAGATGTCTCCAAAGAGAAGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACCCGTGAATTGTGGAGAACACTTAGATGTCTCCAAAGAGAAGAT  826

seq1  ATTGACATGAATGTAGACTCTCACACTCGCCACACTCTTCCCCTCTAAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACATGAATGTAGACTCTCACACTCGCCACACTCTTCCCCTCTAAGT  876

seq1  CCCTCAGGCCCCACCAATCCAAATCAGGAATGACTTGGTGGCATCAGTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGGCCCCACCAATCCAAATCAGGAATGACTTGGTGGCATCAGTAT  926

seq1  GAATCTCTGACACTCACAGAATTC  971
      ||||||||||||||||||||||||
seq2  GAATCTCTGACACTCACAGAATTC  950