BAC Information

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BAC

Clone NameB6Ng01-127F13
Chromosome6 (Build37)
Map Location 42,689,696 - 42,690,541
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245
Downstream geneOlfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127F13.bB6Ng01-127F13.g
ACCDH929487DH929488
length1,264844
definitionDH929487|Mus musculus domesticus DNA, BAC clone: B6Ng01-127F13, 5' end.DH929488|Mus musculus domesticus DNA, BAC clone: B6Ng01-127F13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagctaaggccagatgaccagttgcataaatgaagattataattg
atatgcttccgtcatattgtgttaagaatgttttgtgcagatatttttgc
tttctttcctaaattgctttatcatgaaatgcaacatcaattaagagaat
agcagtagttatcacatttaagtttgagacactaaaggaatgtgccccaa
gagacattgtcacttagtttaattataattcatttgtggtggtacaaggg
agagttatgttatcatattaggcataatgatatccggattattatcttta
tgtagaaattaagcatggcataaggagatatgattgtgtgtcaaattgac
aagggtgaacttgagatggctgttcttggttgtcaacttgactacaactg
gaattaattaaaacccaaatggccggggacatctgtgaaggacttttttt
cttaattaaatcatttgaagtgggaagacttccaattcagagctctaaga
cagaaggatctatctattgttaattagaatcttttgagttgtaaagagat
atacctttaaatttggctacaccttcttctggaaatacacacacacacac
acacacacacacacacacacacacatcttggaagaaggaagctttgctct
tttcaggctctcttttgcattgctaactagtctatttcttcattggcatt
ggagcctacttctggattctggcatatactgaagaacaattaagacatcc
agccttgaggactgaacaactactggcttcttaggccttttattggtaga
cagactataactggtaagtaactagatcacagcctgtaggctgttctata
aattccctttatgtatgtgtatgtgcttgtgcatgtgtgtgtacatctgt
ttatatattaattctgtaagttctatttcttaaagaatcctaacacatct
tccaactttcctttcctgaattcataccattatcccagccccagaattca
gcagacatttcttgggaccctcagtctactttgggccaggaagcaagtag
accactgaggatcttcaatctcttgtacctaattcttcagttcatccata
gctcgtagcataccacagactatggcctcacctcccatctcctactccca
gtggattcatagatctccctcgagtttctttctctcactcttaccttaca
gactactcagggaatttccctggaccagaatgtcgttccaaggaagcaga
gtccatactcttgg
gaattctttattttcttttttcatgccagggattaaatccaggaccccac
acatggtaagcatatgcttttactcctaagctatgcctcagttgcaaagt
ttttcttgctgtagtatttactatgttctattcattatgaccacaatagc
tatgctgccttcctataatttataaaacagtagaagaaagtgaggcacgg
gtgtaggtcatgtttcaacattatgttctgatcaatgatcttgttttaaa
cacatcaatatatcttaaaggatatttaacaggatgttagttgaggtgtg
gtgaatatgtggatactacgattcaaataatgcaaaataggatctgttat
ctatcacaggagaatggagcatgcctagcaaacaggtgaagtttcagcag
ttgatcaaatactgaacagagaacatgaagtccagttgtgtaggagagag
agctcagtaatacagacatgaacatcatgttcactgttcaataccattgt
gttcttaacatcagctatgagattatacttggctcacaggcttttttttt
tttgtcttgtttttacaaataaatagagcaaatatttcttccatttttat
gcccataaaaatcataaatgtagggaatacaatagaacctacagactgtt
tgtggctgcaaagaccaagctctggcttcctgaccagagtgaaatatcat
gaaatcagtattcgggaccctcatttattcatagtgaaataaagaaagaa
tgtgagcacaaagtaatgtgaaggcgcgattaactgttgctgtgttaaga
gatctaggcacatgtcctccatttatgtctttgaatgcaggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_42689696_42690541
seq2: B6Ng01-127F13.g_67_910

seq1  GAATTCTTTATTTTCTTTTTTCATGCCAGGGATTAAATCCAGGACCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTTTCTTTTTTCATGCCAGGGATTAAATCCAGGACCCCAC  50

seq1  ACATGGTAAGCATATGCTTTTACTCCTAAGCTATGCCTCAGTTGCAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTAAGCATATGCTTTTACTCCTAAGCTATGCCTCAGTTGCAAAGT  100

seq1  TTTTCTTGCTGTAGTATTTACTATGTTCTATTCATTATGACCACAATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGCTGTAGTATTTACTATGTTCTATTCATTATGACCACAATAGC  150

seq1  TATGCTGCCTTCCTATAATTTATAAAACAGTAGAAGAAAGTGAGGCACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGCCTTCCTATAATTTATAAAACAGTAGAAGAAAGTGAGGCACGG  200

seq1  GTGTAGGTCATGTTTCAACATTATGTTCTGATCAATGATCTTGTTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGTCATGTTTCAACATTATGTTCTGATCAATGATCTTGTTTTAAA  250

seq1  CACATCAATATATCTTAAAGGATATTTAACAGGATGTTAGTTGAGGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAATATATCTTAAAGGATATTTAACAGGATGTTAGTTGAGGTGTG  300

seq1  GTGAATATGTGGATACTACGATTCAAATAATGCAAAATAGGATCTGTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATGTGGATACTACGATTCAAATAATGCAAAATAGGATCTGTTAT  350

seq1  CTATCACAGGAGAATGGAGCATGCCTAGCAAACAGGTGAAGTTTCAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACAGGAGAATGGAGCATGCCTAGCAAACAGGTGAAGTTTCAGCAG  400

seq1  TTGATCAAATACTGAACAGAGAACATGAAGTCCAGTTGTGTAGGAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAAATACTGAACAGAGAACATGAAGTCCAGTTGTGTAGGAGAGAG  450

seq1  AGCTCAGTAAAACAGACATGAACATCATGTTCACTGTTCAATACCATTGT  500
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTAATACAGACATGAACATCATGTTCACTGTTCAATACCATTGT  500

seq1  GTTCTTAACATCAGCTATGAGATTATACTTGGCTCACAGGCTTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAACATCAGCTATGAGATTATACTTGGCTCACAGGCTTTTTTTTT  550

seq1  TTTGTCTTGTTTTTACAAATAAATAGAGCAAATATTTCTTCCATTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTGTTTTTACAAATAAATAGAGCAAATATTTCTTCCATTTTTAT  600

seq1  GCCCATAAAAATCATAAATGTAGGGAATACAATAGAACCTACAGACTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATAAAAATCATAAATGTAGGGAATACAATAGAACCTACAGACTGTT  650

seq1  TGTGGCTGCAAAGACCAAGCTCTGGCTTCCTGACCAGAGTGAAATATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTGCAAAGACCAAGCTCTGGCTTCCTGACCAGAGTGAAATATCAT  700

seq1  GAAATCAGTATTC-GGACCCTCATTTATTCATAGTGAAATAAAGAAAGAA  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGTATTCGGGACCCTCATTTATTCATAGTGAAATAAAGAAAGAA  750

seq1  GGTGAGCACAAAGTAATGTGAAGGTGCGATTAACTGTTGCTGTGTTAAGA  799
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTGAGCACAAAGTAATGTGAAGGCGCGATTAACTGTTGCTGTGTTAAGA  800

seq1  CATCTAGGCAACATGTTCCTCCATTTATGTCTTTGAAATGCAGGTTT  846
       |||||||| ||||| ||||||||||||||||||| |||||||||||
seq2  GATCTAGGC-ACATG-TCCTCCATTTATGTCTTTG-AATGCAGGTTT  844