BAC Information

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BAC

Clone NameB6Ng01-127K14
Chromosome5 (Build37)6 (Build37)
Map Location 89,689,468 - 89,690,54042,631,931 - 42,632,446
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
Downstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733, Cox18, Ankrd17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127K14.bB6Ng01-127K14.g
ACCDH929718DH929719
length1,0691,095
definitionDH929718|Mus musculus domesticus DNA, BAC clone: B6Ng01-127K14, 5' end.DH929719|Mus musculus domesticus DNA, BAC clone: B6Ng01-127K14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,689,468 - 89,690,540)(42,631,931 - 42,632,446)
sequence
gaattctgcccctgataattattcattggttttgcatgtggttttcatat
tatgtggccattatcctaaggagctgattctactgttgagatgattagga
gccgaatccatgcggcgtggctttgacagcccactaattcagcttggtct
aaccatcatgattaaagacaataaataattctagattctgcttgttttgt
cttccttttaccaaattatggctggttggtacagtgtcccttgatttatt
aatctgacaccttttgtttctgctgactggggttgattaattcttacttc
ttctatagtataggtctgtcctgtgacattgcctttccacaaaaagaaac
ctggggcttgaactgaggtttttatgctgatggagacaagcattttatca
acttagccatctctctagctctatttttcttttttatgtctcaatgtttt
caactattaaatgttgctaaatgttgacaagacttcctgtcttagaaggc
tgtcttatggataaaattaaattaaataatgtccaaataaacaatttggc
tatttttaatagccaaatataaatgattaaatagtttctagcaagttagt
aagtaatgaatgttagctgggttaacagtacactcagttccatgatttta
ggagttgaataattctgaggatatatccaactttgacaagaacaagcttc
tctctgtgaagtaaaaattctcttgagataaaaacaagagccattgtact
ttataaaattaggagaaaccggattctactgggtaacctgaccttatgag
taactcacaaatggtagggaaatcagcaatagggagaaagacaaactgac
atttgctctctttcttccttgcattaagatgacagaaagtaaagtaaata
atatttgcaaaataaatcctgttatatagtatgttgagagtttgaaaaat
taaaagcctgtcaaaatataaattattataggtatcaagatgaataaatc
gtatcaaggcatgatggtttcctgcacaaataattatcttgacactgtcc
tcatctgacaaacgacttt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcagattttactgaaag
gacccagatgtagctgtctcttgtgagacttatgccggggcctagcaaca
ctgaagtggatgctcacgtcagctaatggatggatcacaggctcccaatg
gaggagctagagaagtaccaagagctaaagggatcttcaccctatggtgg
aacaaatatgtcctaccagaccctgagctcttgactctagcgcatgtatc
aaaaatggctatcgcctactgaaaaaagccttgtgatcctacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_89689468_89690540
seq2: B6Ng01-127K14.b_47_1115

seq1  GAATTCTGCCCCTGATAATTATTCATTGGTTTTGCATGTGGTTTTCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCCTGATAATTATTCATTGGTTTTGCATGTGGTTTTCATAT  50

seq1  TATGTGGCCATTATCCTAAGGAGCTGATTCTACTGTTGAGATGATTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGCCATTATCCTAAGGAGCTGATTCTACTGTTGAGATGATTAGGA  100

seq1  GCCGAATCCATGCGGCGTGGCTTTGACAGCCCACTAATTCAGCTTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAATCCATGCGGCGTGGCTTTGACAGCCCACTAATTCAGCTTGGTCT  150

seq1  AACCATCATGATTAAAGACAATAAATAATTCTAGATTCTGCTTGTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCATGATTAAAGACAATAAATAATTCTAGATTCTGCTTGTTTTGT  200

seq1  CTTCCTTTTACCAAATTATGGCTGGTTGGTACAGTGTCCCTTGATTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTTACCAAATTATGGCTGGTTGGTACAGTGTCCCTTGATTTATT  250

seq1  AATCTGACACCTTTTGTTTCTGCTGACTGGGGTTGATTAATTCTTACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGACACCTTTTGTTTCTGCTGACTGGGGTTGATTAATTCTTACTTC  300

seq1  TTCTATAGTATAGGTCTGTCCTGTGACATTGCCTTTCCACAAAAAGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAGTATAGGTCTGTCCTGTGACATTGCCTTTCCACAAAAAGAAAC  350

seq1  CTGGGGCTTGAACTGAGGTTTTTATGCTGATGGAGACAAGCATTTTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTTGAACTGAGGTTTTTATGCTGATGGAGACAAGCATTTTATCA  400

seq1  ACTTAGCCATCTCTCTAGCTCTATTTTTCTTTTTTATGTCTCAATGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCCATCTCTCTAGCTCTATTTTTCTTTTTTATGTCTCAATGTTTT  450

seq1  CAACTATTAAATGTTGCTAAATGTTGACAAGACTTCCTGTCTTAGAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATTAAATGTTGCTAAATGTTGACAAGACTTCCTGTCTTAGAAGGC  500

seq1  TGTCTTATGGATAAAATTAAATTAAATAATGTCCAAATAAACAATTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATGGATAAAATTAAATTAAATAATGTCCAAATAAACAATTTGGC  550

seq1  TATTTTTAATAGCCAAATATAAATGATTAAATAGTTTCTAGCAAGTTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAATAGCCAAATATAAATGATTAAATAGTTTCTAGCAAGTTAGT  600

seq1  AAGTAATGAATGTTAGCTGGGTTAACAGTACACTCAGTTCCATGATTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGAATGTTAGCTGGGTTAACAGTACACTCAGTTCCATGATTTTA  650

seq1  GGAGTTGAATAATTCTGAGGATATATCCAACTTTGACAAGAACAAGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGAATAATTCTGAGGATATATCCAACTTTGACAAGAACAAGCTTC  700

seq1  TCTCTGTGAAGTAAAAATTCTCTTGAGATAAAAACAAGAGCCATTGTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGAAGTAAAAATTCTCTTGAGATAAAAACAAGAGCCATTGTACT  750

seq1  TTATAAAATTAGGAGAAACCGGATTCTACTGGGTAACCTGACCTTATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAATTAGGAGAAACCGGATTCTACTGGGTAACCTGACCTTATGAG  800

seq1  TAACTCACAAATGGTAGGGAAATCAGCAATAGGGAGAAAGACAAACTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCACAAATGGTAGGGAAATCAGCAATAGGGAGAAAGACAAACTGAC  850

seq1  ATTTGCTCTCTTTCTTCCTTGCATTAAGATGACAGAAAGTAAAGTAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCTCTTTCTTCCTTGCATTAAGATGACAGAAAGTAAAGTAAATA  900

seq1  ATATTTGCAAAATAAATCCTGTTATATAGTATGTTGAGAGTTTGAAAAAA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATATTTGCAAAATAAATCCTGTTATATAGTATGTTGAGAGTTTG-AAAAA  949

seq1  TTAAAAGCCTGTCAAAATATAAATTATTATAGGTTATCAAGGTATGAATA  1000
      ||||||||||||||||||||||||||||||||| |||||||  |||||||
seq2  TTAAAAGCCTGTCAAAATATAAATTATTATAGG-TATCAAG--ATGAATA  996

seq1  TATCGTTATCAAGGCATGATGGTTTCCTGCACAAATAAATATC-TGACAA  1049
       |||| |||||||||||||||||||||||||||||||| |||| ||||| 
seq2  AATCG-TATCAAGGCATGATGGTTTCCTGCACAAATAATTATCTTGACAC  1045

seq1  TGTCATCATCTGACAAACGACTTT  1073
      |||| |||||||||||||||||||
seq2  TGTCCTCATCTGACAAACGACTTT  1069

seq1: chr6_42631931_42632446
seq2: B6Ng01-127K14.g_990_1163 (reverse)

seq1  AAAGTAGGATCACAAGTGTTACTCTTGCCTTGTTCTCATTTCTTCTTTTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTAATGGCTAAAGTATGCATTTAATTTTGGCATATCTGGCATAAAAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTAATAAGTAGTAAGGGGACAAACAGAATTCAAAGGATTAGATAAAATTC  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGTTAGATTTTAGAAATTCTTTTTTAAAAATATTTTTATTATTACGTA  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTCCTCAATTACATTTAGAATGCTATCCCAAAAGTCCCCCATACCCTC  250
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTCCACTTCCCTACCCACCCATTCCCATTTTTGGCCCTGGCATTCCCC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TGTATTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGT  350
                     |||||    |  ||  | ||    || ||| ||||
seq2  ---------------AAAGT---AGGATCACAAGG----CTTTTTTCAGT  28

seq1  GATGGCTGACTAGGCCATCTTTTGATACATATTCAGCTAGAGTCAAGAGC  400
         ||| || || ||||| ||||||||||   |  |||||||||||||||
seq2  --AGGC-GA-TA-GCCAT-TTTTGATACA---TGCGCTAGAGTCAAGAGC  69

seq1  TCCGGGGTACTGGTTAGTTCATAATGTTGTTGCACCTACAGGGTTGCAGA  450
      || |||   |||| |||  ||||   ||||| |||| | |||| || |||
seq2  TCAGGG--TCTGG-TAGGACATA--TTTGTTCCACC-ATAGGG-TGAAGA  112

seq1  TCTCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCTG  500
      || |||||||| ||||| ||| ||||||||||||||||||||| | ||||
seq2  TCCCTTTAGCT-CTTGG-TAC-TTCTCTAGCTCCTCCATTGGGAG-CCTG  158

seq1  TGCTCCATCCAATAGC  516
      || |||||||| ||||
seq2  TGATCCATCCATTAGC  174