BAC Information

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BAC

Clone NameB6Ng01-127M06
Chromosome6 (Build37)
Map Location 45,562,032 - 45,562,977
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream geneRbpsuh-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127M06.bB6Ng01-127M06.g
ACCDH929795DH929796
length1,120941
definitionDH929795|Mus musculus domesticus DNA, BAC clone: B6Ng01-127M06, 5' end.DH929796|Mus musculus domesticus DNA, BAC clone: B6Ng01-127M06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcac
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagttttttgctatcctaggttttttgttattccagat
gaattttgcaaattgctccttctaattcgttgaagaattgagttggaatt
ttgatggggattgcattgaatctgtagattgcttttggcaagatagccat
ttttacaatattgatcctgccaatccatgagcatgggagatctttccatc
ttctgagatcttctttaatttctttcttcagagacttgaagtttttatca
tacagatctttcacttccttagttagagtcacgccgagatattttatata
tttggtgactattgagaaggtgttgtttccctaatttctttctcagcctg
tttattcttgtgtagagaaaggccatgacttgtttgagtaatttttatat
caactactccacgaaactggtttatcaggttaaggagtctctggggaaat
tttagggcactacataacta
gaattcaggcttttgtgagatttgaaaaagattttagaacaactacctga
attaattaccatgggttaggatatgagctatgaacaagctgtagggtttc
ttacacatttttttaccttctatttatctgccatgctgttccttcaactg
cttcatagacttgatgttcttactgtaaaggagctcttgtttacagctat
tttctatgtaactttcagtcccatgccaatgctcatggacctatgtagta
ttaaatcgcttcccatgtcgctcagttgagccttgcatttatagaatctc
caataatcaagtttgcatagagatttctacttatgctcttctcactcatt
ttgcttatggatgctcaccagtcatccttatagaactagataacaaacat
tgagctctgtcctttacttataggctttactttctatataatgttaattg
atgaattatggtcatctctgatatacactcagtatgtattaatgacaagt
taaaattcttcttatgcacaagtttttgaggtataaacaaatcatatacc
cttgtaattttcctgtagcccataaataacttgcacaagaggaaaaccca
aaaattccttgcatgttggatttctaaaccaacttgaatatcaagagtct
taaataattttcaattattttaattccattagaattatggtcatatttac
atttgttttacttttcatcacatattattttatttattcttaacttaata
gagtgtagacttatgaataaaagctccaactaattgctctttttgacatt
taacttacctataggagatatatctgcattgcttatgtattgctatgcat
aactatgtgtgtgtatatatacatatatatatatacaaacacatatatat
gtaaaatatataatttatatcaatatatattcattctctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_45562032_45562977
seq2: B6Ng01-127M06.g_69_1009 (reverse)

seq1  GTAGAGAATGAATATATATTGAATATAAAATTATATATGTATACATATAT  50
      ||||||||||||||||||||| |||| ||||||||||| | |||||||||
seq2  GTAGAGAATGAATATATATTG-ATAT-AAATTATATAT-TTTACATATAT  47

seq1  ATGTGTTTGTATATATATATATGTATATATACACACACATAGTTATGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTGTATATATATATATGTATATATACACACACATAGTTATGCAT  97

seq1  AAGCAATACATAAGCAATGCAGATATAATCTCCTATAGGTAAGTTAAATG  150
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -AGCAATACATAAGCAATGCAGATAT-ATCTCCTATAGGTAAGTTAAATG  145

seq1  TCAAAAAGAGCAATTAGTTGGAGCTTTTATTCATAAGTCTACACTCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGAGCAATTAGTTGGAGCTTTTATTCATAAGTCTACACTCTATT  195

seq1  AAGTTAAGAATAAATAAAATAATATGTGATGAAAAGTAAAACAAATGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAGAATAAATAAAATAATATGTGATGAAAAGTAAAACAAATGTAA  245

seq1  ATATGACCATAATTCTAATGGAATTAAAATAATTGAAAATTATTTAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACCATAATTCTAATGGAATTAAAATAATTGAAAATTATTTAAGAC  295

seq1  TCTTGATATTCAAGTTGGTTTAGAAATCCAACATGCAAGGAATTTTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATATTCAAGTTGGTTTAGAAATCCAACATGCAAGGAATTTTTGGG  345

seq1  TTTTCCTCTTGTGCAAGTTATTTATGGGCTACAGGAAAATTACAAGGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTTGTGCAAGTTATTTATGGGCTACAGGAAAATTACAAGGGTA  395

seq1  TATGATTTGTTTATACCTCAAAAACTTGTGCATAAGAAGAATTTTAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTGTTTATACCTCAAAAACTTGTGCATAAGAAGAATTTTAACTT  445

seq1  GTCATTAATACATACTGAGTGTATATCAGAGATGACCATAATTCATCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAATACATACTGAGTGTATATCAGAGATGACCATAATTCATCAAT  495

seq1  TAACATTATATAGAAAGTAAAGCCTATAAGTAAAGGACAGAGCTCAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTATATAGAAAGTAAAGCCTATAAGTAAAGGACAGAGCTCAATGT  545

seq1  TTGTTATCTAGTTCTATAAGGATGACTGGTGAGCATCCATAAGCAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATCTAGTTCTATAAGGATGACTGGTGAGCATCCATAAGCAAAATG  595

seq1  AGTGAGAAGAGCATAAGTAGAAATCTCTATGCAAACTTGATTATTGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAAGAGCATAAGTAGAAATCTCTATGCAAACTTGATTATTGGAGA  645

seq1  TTCTATAAATGCAAGGCTCAACTGAGCGACATGGGAAGCGATTTAATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAAATGCAAGGCTCAACTGAGCGACATGGGAAGCGATTTAATACT  695

seq1  ACATAGGTCCATGAGCATTGGCATGGGACTGAAAGTTACATAGAAAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGTCCATGAGCATTGGCATGGGACTGAAAGTTACATAGAAAATAG  745

seq1  CTGTAAACAAGAGCTCCTTTACAGTAAGAACATCAAGTCTATGAAGCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACAAGAGCTCCTTTACAGTAAGAACATCAAGTCTATGAAGCAGT  795

seq1  TGAAGGAACAGCATGGCAGATAAATAGAAGGTAAAAAAATGTGTAAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAACAGCATGGCAGATAAATAGAAGGTAAAAAAATGTGTAAGAAA  845

seq1  CCCTACAGCTTGTTCATAGCTCATATCCTAACCCATGGTAATTAATTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACAGCTTGTTCATAGCTCATATCCTAACCCATGGTAATTAATTCAG  895

seq1  GTAGTTGTTCTAAAATCTTTTTCAAATCTCACAAAAGCCTGAATTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGTTCTAAAATCTTTTTCAAATCTCACAAAAGCCTGAATTC  941