BAC Information

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BAC

Clone NameB6Ng01-128C12
Chromosome6 (Build37)
Map Location 122,532,975 - 122,633,274
singlet/doubletdoublet
Overlap geneApobec1, Gdf3, Dppa3, EG667107
Upstream geneLOC100043486, A2m, EG640530, Mug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105
Downstream geneLOC100043805, Nanog, LOC100038891, Slc2a3, LOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1, Necap1, EG384482, Clec4a1, Clec4a3, Clec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128C12.bB6Ng01-128C12.g
ACCDH930083DH930084
length3661,103
definitionDH930083|Mus musculus domesticus DNA, BAC clone: B6Ng01-128C12, 5' end.DH930084|Mus musculus domesticus DNA, BAC clone: B6Ng01-128C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,532,975 - 122,533,346)(122,632,160 - 122,633,274)
sequence
tcaaacagcaacattttccaaccctgaacaaagaaataggtcctatattc
acttcccagcacccatatgacagctcacaaccatgtatagcttcagtgcc
aagggatttcacaccctcttcagacctcttcaggtactacacacacacac
acacacacacacacacacacacacacacgtacacattcaatcacatagat
acaaacacatacacattaataataaaaataaatatttacagcctggtcta
tgtgtacagggctacaaggaggaggaggaagaaaaggaggaggagaagtg
gaggaggaggaggaggagaagtggaggaggaggaggaggaggaggagaag
tggaggaggagtagga
gaattcatagggcttagtttcaggctgcactccctcacctgttttataca
gtgtcaaggttctctgcaccctactagctgagctacatccccagcttgaa
ctaaaattcacaaagcaatggaatagcatgagacagttttaaaatggagt
gccagcgcccactctgtctgcatttggatagtgctcctaggcagttttta
ggcagatgttcttaaacatctaaaaagcatcagtcttgctgttttcctgc
tgtaaggggtcctagggcctgaggctctggtgcacacaggattcagcttc
atggcaacccacagtcctggccctgaaaagttttgttgttggaaatattc
tgtgaatactgctttataagtcctgttcccacccacaaagccctggcacc
gggcattctgctagctgccaagcctgggaagagtgtgtctccctcttagt
actgtgggtgttggagccagaacaaatgacagcctacagatgaagtcatg
aggttggttggcatttacataaaagtcctggatggtccaacaagtgtagt
ggcccgaacctgcaaaaagccgccatttgggagttctgcagaggcaggtg
gatctctgtgagtttgaggccagcctggtccatagaacaagttctaggac
aactgaggttacacagagaaacccagtctcaaaaaacaacaaaaagacat
caaaatgccacccaaactttccaccaactccccagattaatacacttctg
agtggtgttcatttaacatgaagcttaagaggatgtatgtgtcactaaaa
aagatgtgggaccaggtgggacagatgaccttctgttcctcttcttccca
gaaacctgcaggacactgggagggaatctggcagcattaagatctgaatc
ttcaggctgccttcacttgtgattttcttacaggcttagcatgaaccaaa
acttagcacagggatttctgcagctcaccttaaaaagaatggcatgaatt
acaagtcactatattttgttaacattagaactgaaaactgaatttctggt
ccaggaaaaactgtcttgactctggtagcattatcactatgaattgggtc
agc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_122532975_122533346
seq2: B6Ng01-128C12.b_47_418

seq1  GAATTCTCAAACAGCAACATTTTCCAACCCTGAACAAAGAAATAGGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAACAGCAACATTTTCCAACCCTGAACAAAGAAATAGGTCCT  50

seq1  ATATTCACTTCCCAGCACCCATATGACAGCTCACAACCATGTATAGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACTTCCCAGCACCCATATGACAGCTCACAACCATGTATAGCTTC  100

seq1  AGTGCCAAGGGATTTCACACCCTCTTCAGACCTCTTCAGGTACTACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAAGGGATTTCACACCCTCTTCAGACCTCTTCAGGTACTACACAC  150

seq1  ACACACACACACACACACACACACACACACACACGTACACATTCAATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACGTACACATTCAATCAC  200

seq1  ATAGATACAAACACATACACATTAATAATAAAAATAAATATTTACAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATACAAACACATACACATTAATAATAAAAATAAATATTTACAGCCT  250

seq1  GGTCTATGTGTACAGGGCTACAAGGAGGAGGAGGAAGAAAAGGAGGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATGTGTACAGGGCTACAAGGAGGAGGAGGAAGAAAAGGAGGAGGA  300

seq1  GAAGTGGAGGAGGAGGAGGAGGAGAAGTGGAGGAGGAGGAGGAGGAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGAGGAGGAGGAGGAGGAGAAGTGGAGGAGGAGGAGGAGGAGGAG  350

seq1  GAGAAGTGGAGGAGGAGGAGGA  372
      ||||||||||||||||| ||||
seq2  GAGAAGTGGAGGAGGAGTAGGA  372

seq1: chr6_122632160_122633274
seq2: B6Ng01-128C12.g_73_1175 (reverse)

seq1  GCTGGCCCATTTCATAGTGATAATGGCTTCCAGAGTCAGGACAGTTTTTT  50
      |||| |||| |||||||||||||| ||| ||||||||| ||||| |||||
seq2  GCTGACCCAATTCATAGTGATAAT-GCTACCAGAGTCAAGACAG-TTTTT  48

seq1  CCTGGACCCCAGAAATACAGTTTTCAGTCATATGTGTAAACAAAATATTA  100
      ||||||  |||||||| |||||||||||  ||  ||| ||||||||| ||
seq2  CCTGGA--CCAGAAATTCAGTTTTCAGTTCTA-ATGTTAACAAAATA-TA  94

seq1  GTGGACTTGTATTTCATTGCATTCTTTATAAGGTGAGCTGCAGAAATCCC  150
      || |||||||| |||||  |||||||| ||||||||||||||||||||||
seq2  GT-GACTTGTAATTCATGCCATTCTTTTTAAGGTGAGCTGCAGAAATCCC  143

seq1  TTGTGCTTAAGTTTTGGTTCATGCTAAGCCTGTAAGAAACATCACAGTGG  200
       ||||| |||||||||||||||||||||||||||||||| ||||||   |
seq2  -TGTGC-TAAGTTTTGGTTCATGCTAAGCCTGTAAGAAA-ATCACAAGTG  190

seq1  AAGGCAGGCCTGAAGATTCAGATCTTAATGCTGCCAGATTCCCTTCCCAG  250
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGGCA-GCCTGAAGATTCAGATCTTAATGCTGCCAGATTCCC-TCCCAG  238

seq1  TGTCCTGCAGGTTTCTGGGGAAGAAGAGGAACAGAAGGTCATCTGTCCCA  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTCCTGCAGGTTTCT-GGGAAGAAGAGGAACAGAAGGTCATCTGTCCCA  287

seq1  CCTGGTCCCACATCTTTTTTAGTGACACATACATCCTCTTAAGCTTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCCACATCTTTTTTAGTGACACATACATCCTCTTAAGCTTCATG  337

seq1  TTAAATGAACACCACTCAGAAGTGTATTAATCTGGGGAGTTGGTGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAACACCACTCAGAAGTGTATTAATCTGGGGAGTTGGTGGAAAG  387

seq1  TTTGGGTGGCATTTTGATGTC-TTTTGTTGTTTTTTGAGACTGGGTTTCT  449
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTGGGTGGCATTTTGATGTCTTTTTGTTGTTTTTTGAGACTGGGTTTCT  437

seq1  CTGTGTAACCTCAGTTGTCCTAGAACTTGTTCTATGGACCAGGCTGGCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAACCTCAGTTGTCCTAGAACTTGTTCTATGGACCAGGCTGGCCT  487

seq1  CAAACTCACAGAGATCCACCTGCCTCTGCAGAACTCCCAAATGGCGGCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCACAGAGATCCACCTGCCTCTGCAGAACTCCCAAATGGCGGCTT  537

seq1  TTTGCAGGTTCGGGCCACTACACTTGTTGGACCATCCAGGACTTTTATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGTTCGGGCCACTACACTTGTTGGACCATCCAGGACTTTTATGT  587

seq1  AAATGCCAACCAACCTCATGACTTCATCTGTAGGCTGTCATTTGTTCTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAACCAACCTCATGACTTCATCTGTAGGCTGTCATTTGTTCTGG  637

seq1  CTCCAACACCCACAGTACTAAGAGGGAGACACACTCTTCCCAGGCTTGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACACCCACAGTACTAAGAGGGAGACACACTCTTCCCAGGCTTGGC  687

seq1  AGCTAGCAGAATGCCCGGTGCCAGGGCTTTGTGGGTGGGAACAGGACTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCAGAATGCCCGGTGCCAGGGCTTTGTGGGTGGGAACAGGACTTA  737

seq1  TAAAGCAGTATTCACAGAATATTTCCAACAACAAAACTTTTCAGGGCCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGTATTCACAGAATATTTCCAACAACAAAACTTTTCAGGGCCAG  787

seq1  GACTGTGGGTTGCCATGAAGCTGAATCCTGTGTGCACCAGAGCCTCAGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGGGTTGCCATGAAGCTGAATCCTGTGTGCACCAGAGCCTCAGGC  837

seq1  CCTAGGACCCCTTACAGCAGGAAAACAGCAAGACTGATGCTTTTTAGATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACCCCTTACAGCAGGAAAACAGCAAGACTGATGCTTTTTAGATG  887

seq1  TTTAAGAACATCTGCCTAAAAACTGCCTAGGAGCACTATCCAAATGCAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAACATCTGCCTAAAAACTGCCTAGGAGCACTATCCAAATGCAGA  937

seq1  CAGAGTGGGCGCTGGCACTCCATTTTAAAACTGTCTCATGCTATTCCATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGGCGCTGGCACTCCATTTTAAAACTGTCTCATGCTATTCCATT  987

seq1  GCTTTGTGAATTTTAGTTCAAGCTGGGGATGTAGCTCAGCTAGTAGGGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGAATTTTAGTTCAAGCTGGGGATGTAGCTCAGCTAGTAGGGTG  1037

seq1  CAGAGAACCTTGACACTGTATAAAACAGGTGAGGGAGTGCAGCCTGAAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACCTTGACACTGTATAAAACAGGTGAGGGAGTGCAGCCTGAAAC  1087

seq1  TAAGCCCTATGAATTC  1115
      ||||||||||||||||
seq2  TAAGCCCTATGAATTC  1103