BAC Information

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BAC

Clone NameB6Ng01-128C22
Chromosome6 (Build37)
Map Location 23,729,681 - 23,821,391
singlet/doubletdoublet
Overlap geneCadps2
Upstream genePtprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Rnf133, Rnf148
Downstream geneTas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128C22.bB6Ng01-128C22.g
ACCDH930103DH930104
length1,1851,087
definitionDH930103|Mus musculus domesticus DNA, BAC clone: B6Ng01-128C22, 5' end.DH930104|Mus musculus domesticus DNA, BAC clone: B6Ng01-128C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,820,209 - 23,821,391)(23,729,681 - 23,730,671)
sequence
gaattcttggtattgagattaagttgaagtttgattataaaatacgttgg
taatgtgtcctagaaaaactaatttttcaaaagcattacctatttccaca
aaaaccagaaactggaggtggtgatgaatatatggcaagttattacagct
cagttctttgccatgctttatagcaaagcagaacatagattaataataga
ccaatagctctagggcttctcctaaccacagtccccaaagatatctaata
tgtagtcattgtcacttatgtcaacaaagctgaaacacagacacaggggg
aaaagagtgcatttactaatgggaagaatttagatttcttggtgttctac
aaagtcttttatatatttttaaagtgtaaagtaggcaagcagaggagaga
atgaaaaagaatgaagttttgtttttattttggttttttaatcaatctat
atttgaaggcctaatctaaactactttggagcttcagcgcatccatctat
ctccccgcctatgttacatgcagaaagatttctctttactttgtttcaga
aatttcccttggaacttgaaaaacaagtgaagcctcattttcacttccaa
acaaactcacctaatttttaagctactctttaattgcaatgacttttaat
actggccttaatgattgatttttatcttaccattttcagtgctaatcaag
caaattatacataatttggctgttataattacaatgtgctattcacattg
tgacatcacaacatgtgacttattccaaaaatataaaatttggtgacttg
agtaactaaattatgtttactaggtaacatgtcatttcatctcacattgt
tcaggagtgttagaatatttcattcaatcaacaagacaagagagaaaatt
aggattaatttgaagtctgataaatatgaagattcaatgtcatttgtcaa
tgtgctatggaaattaatagatcaaattactcttttatcttagtatacct
ggggatagtgcaaggatccaaacaatcctatctaattacttcaactgttt
tggtgctgttggagtgattgtcaaaaagagaagtcactgaaataagaatg
aaatatgttctttctctttatcagaatcaagaaacccttgcctggttatg
accagctctacaagtgacattgtgcaatcagtatg
gaattctttgtttagctctgagccccatttttaaatggggttatttgatc
ttctggagtccacctttttgagttctttatatatattggatattagtcct
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcaatttta
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgcattt
caaaagagacactatacacatggaaatggcagatatatcagatctcttat
attttgaagctattaattataaaattatgcttgaaggaccaagtattaat
atgacttgagctaatgaaaacggatacaaaggatataaaattactaaaag
ttcatagttgaagtatataataaaaatatttaaaattttagtgtttgagg
ctcaacggcagaatagctggaacaagatgaagaaaaataccagtaaattg
gaaagcaaaatattggtggtggaagtaactgagaaaaataaacacggtct
tggagacttgaggaattatcacaaataacctctactttatgtcactagaa
tcacagaatgaaatagcagaatgtgtctgaatgacacataaacctatcga
ttcaagaaggcaagacatttcaaagtttaagtctgtttcaagacacatca
tcactaaaactctgaattctaaagataagacaaaaatttcggagagtaga
tcaaaaaaatagcgatatgaaatttaaagtagtggtaagtttcctcagaa
accataagagctagaagttaagtagcaaaagtaatttaagggtggtcaat
cgacaatcttatatctatcaaaacacccttcaggaatagagggaaatcaa
tacatcctcagatataagagaaagctgagagacttttgccagtaaattac
tctaaagacgcttaagtgagtttcatagaagatgacttaaaggagagaaa
agcaatcaaagcagcagcagctgagaaaaagagggggaaggcgaaccagc
cacacagtgctctgccagatgaagaaaatgctctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_23820209_23821391
seq2: B6Ng01-128C22.b_42_1226 (reverse)

seq1  CATACTGAATGCACAATGTCACCCTGTAGAGCTGGTCATAACCA-GCCAG  49
      |||||||| |||||||||||| | |||||||||||||||||||| || ||
seq2  CATACTGATTGCACAATGTCA-CTTGTAGAGCTGGTCATAACCAGGCAAG  49

seq1  GTGTCCTTGA-TCTGATAAAGAGAA--GACATATTTCA-TCTTATTTCAG  95
      |  | ||||| ||||||||||||||   |||||||||| |||||||||||
seq2  GGTTTCTTGATTCTGATAAAGAGAAAGAACATATTTCATTCTTATTTCAG  99

seq1  TGACCT-TCTCTCTGAC-ATCACTCAACCAGCACAAAAACAAGTTGAGGT  143
      |||| | ||| | |||| ||||||| | |||||| ||||| |||||| ||
seq2  TGACTTCTCTTTTTGACAATCACTCCAACAGCACCAAAAC-AGTTGAAGT  148

seq1  AATTAGATAGGATTGTTTGGATTCCTTGCAACTAATCCCCAGGTATACTA  193
      ||||||||||||||||||||| ||||||| ||| ||||||||||||||||
seq2  AATTAGATAGGATTGTTTGGA-TCCTTGC-ACT-ATCCCCAGGTATACTA  195

seq1  AGATAAAAGAGTAATTTGATCTATTAATTTCCATAGCACATTGACAAATG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAGAGTAATTTGATCTATTAATTTCCATAGCACATTGACAAATG  245

seq1  ACATTGAATCTTCATATTTATCAGACTTCAAATTAATCCTAATTTTCTCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAATCTTCATATTTATCAGACTTCAAATTAATCCTAATTTTCTCT  295

seq1  CTTGTCTTGTTGATTGAATGAAATATTCTAACACTCCTGAACAATGTGAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTGTTGATTGAATGAAATATTCTAACACTCCTGAACAATGTGAG  345

seq1  ATGAAATGACATGTTACCTAGTAAACATAATTTAGTTACTCAAGTCACCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGACATGTTACCTAGTAAACATAATTTAGTTACTCAAGTCACCA  395

seq1  AATTTTATATTTTTGGAATAAGTCACATGTTGTGATGTCACAATGTGAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATATTTTTGGAATAAGTCACATGTTGTGATGTCACAATGTGAAT  445

seq1  AGCACATTGTAATTATAACAGCCAAATTATGTATAATTTGCTTGATTAGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTGTAATTATAACAGCCAAATTATGTATAATTTGCTTGATTAGC  495

seq1  ACTGAAAATGGTAAGATAAAAATCAATCATTAAGGCCAGTATTAAAAGTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAATGGTAAGATAAAAATCAATCATTAAGGCCAGTATTAAAAGTC  545

seq1  ATTGCAATTAAAGAGTAGCTTAAAAATTAGGTGAGTTTGTTTGGAAGTGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAATTAAAGAGTAGCTTAAAAATTAGGTGAGTTTGTTTGGAAGTGA  595

seq1  AAATGAGGCTTCACTTGTTTTTCAAGTTCCAAGGGAAATTTCTGAAACAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGCTTCACTTGTTTTTCAAGTTCCAAGGGAAATTTCTGAAACAA  645

seq1  AGTAAAGAGAAATCTTTCTGCATGTAACATAGGCGGGGAGATAGATGGAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAGAAATCTTTCTGCATGTAACATAGGCGGGGAGATAGATGGAT  695

seq1  GCGCTGAAGCTCCAAAGTAGTTTAGATTAGGCCTTCAAATATAGATTGAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGAAGCTCCAAAGTAGTTTAGATTAGGCCTTCAAATATAGATTGAT  745

seq1  TAAAAAACCAAAATAAAAACAAAACTTCATTCTTTTTCATTCTCTCCTCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACCAAAATAAAAACAAAACTTCATTCTTTTTCATTCTCTCCTCT  795

seq1  GCTTGCCTACTTTACACTTTAAAAATATATAAAAGACTTTGTAGAACACC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTACTTTACACTTTAAAAATATATAAAAGACTTTGTAGAACACC  845

seq1  AAGAAATCTAAATTCTTCCCATTAGTAAATGCACTCTTTTCCCCCTGTGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCTAAATTCTTCCCATTAGTAAATGCACTCTTTTCCCCCTGTGT  895

seq1  CTGTGTTTCAGCTTTGTTGACATAAGTGACAATGACTACATATTAGATAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTCAGCTTTGTTGACATAAGTGACAATGACTACATATTAGATAT  945

seq1  CTTTGGGGACTGTGGTTAGGAGAAGCCCTAGAGCTATTGGTCTATTATTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGGACTGTGGTTAGGAGAAGCCCTAGAGCTATTGGTCTATTATTA  995

seq1  ATCTATGTTCTGCTTTGCTATAAAGCATGGCAAAGAACTGAGCTGTAATA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTTCTGCTTTGCTATAAAGCATGGCAAAGAACTGAGCTGTAATA  1045

seq1  ACTTGCCATATATTCATCACCACCTCCAGTTTCTGGTTTTTGTGGAAATA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCATATATTCATCACCACCTCCAGTTTCTGGTTTTTGTGGAAATA  1095

seq1  GGTAATGCTTTTGAAAAATTAGTTTTTCTAGGACACATTACCAACGTATT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGCTTTTGAAAAATTAGTTTTTCTAGGACACATTACCAACGTATT  1145

seq1  TTATAATCAAACTTCAACTTAATCTCAATACCAAGAATTC  1183
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATCAAACTTCAACTTAATCTCAATACCAAGAATTC  1185

seq1: chr6_23729681_23730671
seq2: B6Ng01-128C22.g_181_1152

seq1  TAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGAC  50

seq1  GGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTGT  100

seq1  CAATTCTCGATCTTACAGCACAAGCCATTGCATTTCAAAAGAGACACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCGATCTTACAGCACAAGCCATTGCATTTCAAAAGAGACACTAT  150

seq1  ACACATGGAAATGGCAGATATATCAGATCTCTTATATTTTGAAGCTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGAAATGGCAGATATATCAGATCTCTTATATTTTGAAGCTATTA  200

seq1  ATTATAAAATTATGCTTGAAGGACCAAGTATTAATATGACTTGAGCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAATTATGCTTGAAGGACCAAGTATTAATATGACTTGAGCTAAT  250

seq1  GAAAACGGATACAAAGGATATAAAATTACTAAAAGTTCATAGTTGAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGGATACAAAGGATATAAAATTACTAAAAGTTCATAGTTGAAGTA  300

seq1  TATAATAAAAATATTTAAAATTTTAGTGTTTGAGGCTCAACGGCAGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAAAATATTTAAAATTTTAGTGTTTGAGGCTCAACGGCAGAATA  350

seq1  GCTGGAACAAGATGAAGAAAAATACCAGTAAATTGGAAAGCAAAATATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAACAAGATGAAGAAAAATACCAGTAAATTGGAAAGCAAAATATTG  400

seq1  GTGGTGGAAGTAACTGAGAAAAATAAACACGGTCTTGGAGACTTGAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGAAGTAACTGAGAAAAATAAACACGGTCTTGGAGACTTGAGGAA  450

seq1  TTATCACAAATAACCTCTACTTTATGTCACTAGAATCACAGAATGAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACAAATAACCTCTACTTTATGTCACTAGAATCACAGAATGAAATA  500

seq1  GCAGAATGTGTCTGAATGACACATAAACCTATCGATTCAAGAAGGCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGTGTCTGAATGACACATAAACCTATCGATTCAAGAAGGCAAGA  550

seq1  CATTTCAAAGTTTAAGTCTGTTTCAAGACACATCATCACTAAAACTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAAGTTTAAGTCTGTTTCAAGACACATCATCACTAAAACTCTGA  600

seq1  ATTCTAAAGATAAGACAAAAATTTCGGAGAGTAGATCAAAAAAATAGCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAGATAAGACAAAAATTTCGGAGAGTAGATCAAAAAAATAGCGA  650

seq1  TATGAAATTTAAAGTAGTGGTAAGTTTCCTCAGAAACCATAAGAGCTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATTTAAAGTAGTGGTAAGTTTCCTCAGAAACCATAAGAGCTAGA  700

seq1  AGTTAAGTAGCAAAAGTAATTTAAGGGTGGTCAATCGACAATCTTATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGTAGCAAAAGTAATTTAAGGGTGGTCAATCGACAATCTTATATC  750

seq1  TATCAAAACACCCTTCAGGAAATAAGAGGGAAATCAATACATCCTCAGAT  800
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  TATCAAAACACCCTTCAGGAA--TAGAGGGAAATCAATACATCCTCAGAT  798

seq1  AATAAGAGAAAGCTGAGAGAACTTTTGCCAGTAAATTTACTCTAAAAGAA  850
       |||||||||||||||||| ||||||||||||||| ||||||||||   |
seq2  -ATAAGAGAAAGCTGAGAG-ACTTTTGCCAGTAAA-TTACTCTAAA--GA  843

seq1  GGCTTAAGTGAGTTTTCCAATAAGAAAGATGACTTAAAAGAAGAAGAAAA  900
       ||||||||||||||    |||   ||||||||||||| ||   ||||||
seq2  CGCTTAAGTGAGTTT---CATA--GAAGATGACTTAAAGGA--GAGAAAA  886

seq1  GCAAATCAAAGCAGCAGCAGCTGAGAAAAAGAGGGGGAAAGACAGACCCA  950
      || |||||||||||||||||||||||||||||||||||| |   || || 
seq2  GC-AATCAAAGCAGCAGCAGCTGAGAAAAAGAGGGGGAAGG--CGAACC-  932

seq1  AGCCACCACAGTGCTCTG-CAGATGAGGAAAATGCTCCTCTT  991
      ||||| |||||||||||| ||||||| ||||||||| |||||
seq2  AGCCA-CACAGTGCTCTGCCAGATGAAGAAAATGCT-CTCTT  972