BAC Information

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BAC

Clone NameB6Ng01-129G19
Chromosome6 (Build37)
Map Location 15,040,559 - 15,163,549
singlet/doubletdoublet
Overlap geneFoxp2
Upstream geneLOC100040513, LOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129G19.bB6Ng01-129G19.g
ACCDH931010DH931011
length1,0921,120
definitionDH931010|Mus musculus domesticus DNA, BAC clone: B6Ng01-129G19, 5' end.DH931011|Mus musculus domesticus DNA, BAC clone: B6Ng01-129G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,040,559 - 15,041,656)(15,162,405 - 15,163,549)
sequence
gaattctctgaaatcaaatggaataatttggcaggtttaagcccatgaaa
aagactaagcagtgagatcgaatacattttgtggtcagtataagacagga
taaatattcctgttagtattggatctataagactcacttttaaaaagtat
aataaaatgttaaatgaaattattactatatgatgttgttttgtattaaa
ataagtcatctgtgaaatatcaatagggaaaagttattaaaacaacaatg
ttttgaggactttcttttttatctctctataacagttaagtgcatggatc
agtagtctcagagaatttaataaacaacacaaatgaatggaattttcaaa
gtacacttcagaatcttaagattccacatagctgtgattcttggccactg
ctgaccaacagtaacccaaaagttcagtcttttattcattaataaagatt
atgtgttcaagtttagaaacatttggggggttacatatcctgtgaagttt
tgtttgttttggttttgttgagtttcacatgttgcttgttgtggggaaga
aaagctctcagaatttttttttcaaagaataatacaaaataacattttgt
atgccttgtcatcttaaataatttaggggaaaaagcttagagtgacctta
gtctctgaaactctataaaatgctagcgagtgcatctgatgctgtagtgg
tttccttgaggttcccccacaagtctccagcatttcaatacttggtctcc
agttgttggcactattttggaaaaaaagaatggggtgtggtcttgctgga
gattgtgtgtcactagggatgagctttgagatttcaaaaacttagaacac
tagaattacagcctcaggacctatgccctggggggagataagtgacagag
aaggagttgtcagtttgttgttgggatcctcctgtttctgttgccctgcc
tcagtcactgattttctaccaccacaatgagtcaccttaagaaatgattg
acccttttttccattatttctgttaacaattggagagaaactttggtact
gacagtgacttgtttttctccatgtgattatccaatgctcga
gaattcacgatatgctgtagttcagaatgaaatgtgaaattctagtaaca
tgatcaaatggctattgaagtcactcagagttgtttacacttgagttgca
ctgtttgtcaccaaagtatcttaaagcctgaaagactgctcagcaggtat
gagtgctctcaagccggataaccagagtttgatacccaagatatcaatct
ttcagaactaactcgcctccacatggctctggggcataaacacaaccctc
attctaaatacataaaagcatattgaacatttacaaattagaatggatat
ctttaatatcttgatgtagtatattgaaaacacacagtgtatatttcttg
aaggtatttccttagagcttcttgagaattacaaattcacataatatata
aaaagaatattactatgaccacataaactactatcttttcatataagact
atataatattaaattaaatttaaaactttctatggttcattcacaaagtt
ttcaagaaaatcaattaattagttataattttatctaatcttaaagtata
taacccaagttttgttagcattataaatagcatgggtatttttaaaacat
agttgataacccacaaagtaaggatttgaaggatttttttttttggtttt
taggtctatatttattttgtttattttaaataaaataaaaatgggcctct
caattagaagcacatttcactaaaaacagacatagaaacagacataaaag
gaaatgagttgtgaagttggagctgattctaagtcacatgccgttgaaag
ccaatttatgttttggttagagaagggtcaccacgacactttcaagtcat
ggcgcctgcagcaaatctcttgttatttacagagaataaaaaggcataac
tcatttcttataagcttcttcagttctcaaatagtctaagaaatgccaaa
gcttgccatagtaacagttccactgataaccctgagcacagcagcatctg
ttacatagatttgatcccagatgtccggtgggatttagcagctacggaat
tgtaagggtttaatttagcatctaaactttattgactaagaggtatatat
tggaatagctgaatgaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15040559_15041656
seq2: B6Ng01-129G19.b_44_1135

seq1  GAATTCTCTGAAATCAAATGGAATAATTTGGCAGGTTTAAGCCCATGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAATCAAATGGAATAATTTGGCAGGTTTAAGCCCATGAAA  50

seq1  AAGACTAAGCAGTGAGATCGAATACATTTTGTGGTCAGTATAAGACAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTAAGCAGTGAGATCGAATACATTTTGTGGTCAGTATAAGACAGGA  100

seq1  TAAATATTCCTGTTAGTATTGGATCTATAAGACTCACTTTTAAAAAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTCCTGTTAGTATTGGATCTATAAGACTCACTTTTAAAAAGTAT  150

seq1  AATAAAATGTTAAATGAAATTATTACTATATGATGTTGTTTTGTATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGTTAAATGAAATTATTACTATATGATGTTGTTTTGTATTAAA  200

seq1  ATAAGTCATCTGTGAAATATCAATAGGGAAAAGTTATTAAAACAACAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCATCTGTGAAATATCAATAGGGAAAAGTTATTAAAACAACAATG  250

seq1  TTTTGAGGACTTTCTTTTTTATCTCTCTATAACAGTTAAGTGCATGGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGACTTTCTTTTTTATCTCTCTATAACAGTTAAGTGCATGGATC  300

seq1  AGTAGTCTCAGAGAATTTAATAAACAACACAAATGAATGGAATTTTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCTCAGAGAATTTAATAAACAACACAAATGAATGGAATTTTCAAA  350

seq1  GTACACTTCAGAATCTTAAGATTCCACATAGCTGTGATTCTTGGCCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTTCAGAATCTTAAGATTCCACATAGCTGTGATTCTTGGCCACTG  400

seq1  CTGACCAACAGTAACCCAAAAGTTCAGTCTTTTATTCATTAATAAAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAACAGTAACCCAAAAGTTCAGTCTTTTATTCATTAATAAAGATT  450

seq1  ATGTGTTCAAGTTTAGAAACATTTGGGGGGTTACATATCCTGTGAAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCAAGTTTAGAAACATTTGGGGGGTTACATATCCTGTGAAGTTT  500

seq1  TGTTTGTTTTGGTTTTGTTGAGTTTCACATGTTGCTTGTTGTGGGGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTGGTTTTGTTGAGTTTCACATGTTGCTTGTTGTGGGGAAGA  550

seq1  AAAGCTCTCAGAATTTTTTTTTCAAAGAATAATACAAAATAACATTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTCAGAATTTTTTTTTCAAAGAATAATACAAAATAACATTTTGT  600

seq1  ATGCCTTGTCATCTTAAATAATTTAGGGGAAAAAGCTTAGAGTGACCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTGTCATCTTAAATAATTTAGGGGAAAAAGCTTAGAGTGACCTTA  650

seq1  GTCTCTGAAACTCTATAAAATGCTAGCGAGTGCATCTGATGCTGTAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGAAACTCTATAAAATGCTAGCGAGTGCATCTGATGCTGTAGTGG  700

seq1  TTTCCTTGAGGTTCCCCCACAAGTCTCCAGCATTTCAATACTTGGTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGAGGTTCCCCCACAAGTCTCCAGCATTTCAATACTTGGTCTCC  750

seq1  AGTTGTTGGCACTATTTTGGAAAAAAAGAATGGGGTGTGGTCTTGCTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTGGCACTATTTTGGAAAAAAAGAATGGGGTGTGGTCTTGCTGGA  800

seq1  GATTGTGTGTCACTAGGGATGAGCTTTGAGATTTCAAAAACTTAGAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGTGTCACTAGGGATGAGCTTTGAGATTTCAAAAACTTAGAACAC  850

seq1  TAGAATTACAGCCTCAGGGACCTATGCCCTGGGGGGAGATAAGTGACAGA  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGAATTACAGCCTCA-GGACCTATGCCCTGGGGGGAGATAAGTGACAGA  899

seq1  GAAGGAGTTGTCAGTTTGTTGTTGGAATCCTCCTGTTTCTGTTGCCCTGC  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAAGGAGTTGTCAGTTTGTTGTTGGGATCCTCCTGTTTCTGTTGCCCTGC  949

seq1  CTCCAGTCACTGATTTTCTACCACCACAATGAGTCACCTTAAAGAAATGA  1000
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CT-CAGTCACTGATTTTCTACCACCACAATGAGTCACCTT-AAGAAATGA  997

seq1  TTGACCCTTTTTTCCATTTATCTCTGTTAACAATT-GAGAGAAACTTTGG  1049
      |||||||||||||||| |||| ||||||||||||| ||||||||||||||
seq2  TTGACCCTTTTTTCCA-TTATTTCTGTTAACAATTGGAGAGAAACTTTGG  1046

seq1  TACTTGACAGTGACTTTGTTTTTCTTCCATGTGATTATCCCATGCTCGA  1098
      ||| |||||||||| ||||||||| ||||||||||||||| ||||||||
seq2  TAC-TGACAGTGAC-TTGTTTTTC-TCCATGTGATTATCCAATGCTCGA  1092

seq1: chr6_15162405_15163549
seq2: B6Ng01-129G19.g_67_1186 (reverse)

seq1  TTTTTCTACTCAGCTATTCCAATTAATATAAACCTCCTTTAGTTCATAAA  50
      |||||| | |||||||||||    |||||| |||||  |||||  |||||
seq2  TTTTTC-ATTCAGCTATTCC----AATATATACCTC--TTAGTCAATAAA  43

seq1  GTTGTAAGAATTGCTAAAATTTAAACCCCCTACATTTCGGTAGCTGCTAA  100
      ||  | |||  |||||||  ||||| ||| |||| ||| ||||||||| |
seq2  GT--TTAGA--TGCTAAA--TTAAA-CCCTTACAATTCCGTAGCTGCT-A  85

seq1  AATCCCACCCGACATCCTGGGGATCAAATTCTATGTAACAGATGCTGCTG  150
      ||||||||| ||||||   ||||||||| |||||||||||||||||||||
seq2  AATCCCACCGGACATC--TGGGATCAAA-TCTATGTAACAGATGCTGCTG  132

seq1  TGCTCAGGGTTATCAGTGAACTTGTTAACTATGGCAAGCCTTTGGCATTT  200
      |||||||||||||||||| |  |||| ||||||||||| |||||||||||
seq2  TGCTCAGGGTTATCAGTGGAACTGTT-ACTATGGCAAG-CTTTGGCATTT  180

seq1  CTTAGAACTATTTGAAGAACTGAAGAAGCTTATTAAGAAAATGAGTTTAT  250
      ||||| |||||||| ||||||||||||||||| |||| ||||||| ||||
seq2  CTTAG-ACTATTTG-AGAACTGAAGAAGCTTA-TAAG-AAATGAG-TTAT  225

seq1  GCCTTTTTATTCTCTGTAAATAACAAGAGATTTGCTGCAGGCGCCATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTTATTCTCTGTAAATAACAAGAGATTTGCTGCAGGCGCCATGAC  275

seq1  TTGAAAGTGTCGTGGTGACCCTTCTCTAACCAAAACATAAATTGGCCTTC  350
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGAAAGTGTCGTGGTGACCCTTCTCTAACCAAAACATAAATTGGCTTTC  325

seq1  AACGGCATGTGACTTAGAATCAGCTCCAACTTCACAACTCATTTCCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCATGTGACTTAGAATCAGCTCCAACTTCACAACTCATTTCCTTTT  375

seq1  ATGTCTGTTTCTATGTCTGTTTTTAGTGAAATGTGCTTCTAATTGAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTTTCTATGTCTGTTTTTAGTGAAATGTGCTTCTAATTGAGAGG  425

seq1  CCCATTTTTATTTTATTTAAAATAAACAAAATAAATATAGACCTAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTTATTTTATTTAAAATAAACAAAATAAATATAGACCTAAAAAC  475

seq1  CAAAAAAAAAAATCCTTCAAATCCTTACTTTGTGGGTTATCAACTATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAATCCTTCAAATCCTTACTTTGTGGGTTATCAACTATGTT  525

seq1  TTAAAAATACCCATGCTATTTATAATGCTAACAAAACTTGGGTTATATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATACCCATGCTATTTATAATGCTAACAAAACTTGGGTTATATAC  575

seq1  TTTAAGATTAGATAAAATTATAACTAATTAATTGATTTTCTTGAAAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATTAGATAAAATTATAACTAATTAATTGATTTTCTTGAAAACTT  625

seq1  TGTGAATGAACCATAGAAAGTTTTAAATTTAATTTAATATTATATAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGAACCATAGAAAGTTTTAAATTTAATTTAATATTATATAGTCT  675

seq1  TATATGAAAAGATAGTAGTTTATGTGGTCATAGTAATATTCTTTTTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAAAAGATAGTAGTTTATGTGGTCATAGTAATATTCTTTTTATAT  725

seq1  ATTATGTGAATTTGTAATTCTCAAGAAGCTCTAAGGAAATACCTTCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTGAATTTGTAATTCTCAAGAAGCTCTAAGGAAATACCTTCAAGA  775

seq1  AATATACACTGTGTGTTTTCAATATACTACATCAAGATATTAAAGATATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACACTGTGTGTTTTCAATATACTACATCAAGATATTAAAGATATC  825

seq1  CATTCTAATTTGTAAATGTTCAATATGCTTTTATGTATTTAGAATGAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAATTTGTAAATGTTCAATATGCTTTTATGTATTTAGAATGAGGG  875

seq1  TTGTGTTTATGCCCCAGAGCCATGTGGAGGCGAGTTAGTTCTGAAAGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTATGCCCCAGAGCCATGTGGAGGCGAGTTAGTTCTGAAAGATT  925

seq1  GATATCTTGGGTATCAAACTCTGGTTATCCGGCTTGAGAGCACTCATACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTGGGTATCAAACTCTGGTTATCCGGCTTGAGAGCACTCATACC  975

seq1  TGCTGAGCAGTCTTTCAGGCTTTAAGATACTTTGGTGACAAACAGTGCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCAGTCTTTCAGGCTTTAAGATACTTTGGTGACAAACAGTGCAA  1025

seq1  CTCAAGTGTAAACAACTCTGAGTGACTTCAATAGCCATTTGATCATGTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTGTAAACAACTCTGAGTGACTTCAATAGCCATTTGATCATGTTA  1075

seq1  CTAGAATTTCACATTTCATTCTGAACTACAGCATATCGTGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTTCACATTTCATTCTGAACTACAGCATATCGTGAATTC  1120