BAC Information

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BAC

Clone NameB6Ng01-129G22
Chromosome6 (Build37)
Map Location 125,224,052 - 125,398,136
singlet/doubletdoublet
Overlap geneTuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6
Upstream geneEG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik
Downstream geneCd9, Vwf, Tmem16b, Ntf3, LOC100043565, LOC667427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129G22.bB6Ng01-129G22.g
ACCDH931016DH931017
length1,0431,018
definitionDH931016|Mus musculus domesticus DNA, BAC clone: B6Ng01-129G22, 5' end.DH931017|Mus musculus domesticus DNA, BAC clone: B6Ng01-129G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,397,089 - 125,398,136)(125,224,052 - 125,225,069)
sequence
gaattcctgtctcaaataaataaataaataaataaataaaataggtaacc
ccataggaagaccaacattgtcaactaatgtggaccccagggagctctga
gagactaagccaccaaccaaagagcatacaagggctggtacaagggccac
aagacatatgtagcagaggactgactgccttgtctggccccagtgggaga
ggatgtgcctaatcctgtagagacttgatgcctcagagaaaggggatgtg
gggggcgggggacacaccctctcaaaggcgaaggggagggggattgaatg
aagaactctgagcagagggaccaggagaggggcaagcaacacttgggatg
aaaataaaataaaataaaataaaggaacacagtgtcccaaacaaatgaca
ataaatataaagatcttaaattggctttatttgagattttagaatcagac
aacactcagattgtcaaataaagtaattcgtttggagagcctgagtaacg
ggaagggaggagaaaaggccatttcaaagtgacttttcttgcctggcagg
gacagggagacagagtgacaggaaataactggttgcagtcaggttacttt
gggtgaggtttttgtaaagagggaagcagaaggacttcattaccatagcc
actgaatacagtcagctctgaccagccttgattcttggaaggtcagatta
caaactgagtctctgtaggtcactgtgcagctttgtagtaaggaattccg
gttttaccgtagtctggtgcactggggcttatgccaggacttcagtctgt
gggatacagcccaggatttcaggcctgtctgtgtacccagttagccccag
catcacactcaaacggccttcttaagtgatgcagagtcatgagagcttgg
gaatctgaactccggatataagtctgctttcaatgctactaacaagaagc
agtagctcatggtgcagagacagagacaagagccatctatcccaccagaa
aaaaagatttgacttcctaatggccttcagaaacataaatgca
gaattctaggacagccagggctacctgtctcagacagaccttgtctcaaa
aagatattacttaatgttttgtatgtgtgtgttaaatattttgattacat
atatggatgtatgtgccacctgtgccagaggaggctgaaagaaggcgtca
ggtcccctggaactggggctatggcttcctgagagccaccacgtggatgc
tgagaattggagctgggtcctctgtaagagtaatagtgctctcaactgct
cagccatctctccagctggctaaaatgtattcatattggagactggccta
attaagattgttagctaagtgaatgatgacagcaacatcataattacatt
ctgaataactgcgttctgaagcgacactctttttgcctctgagtttccag
gattgggcttttggtgacgttagaataacgctcacgctgggaacgaaccg
cactgatttaaacctggccccaaagtctcagtgaggactttgaagacttt
ccattagcagaggaaactctgatgaaaacgactccctttctctggttgat
gccgacagtgtgtttcagggaacttttctatcaaaggtgttgtgttgggt
aattttgtcagcttgaaggaccctggaatcacgatggaagcagatctcag
gtcatgtctgtgagggatatctagatgtgtttaatcgagatggaaagacc
taccttcaatgtggacagtatcattacaggctggggtccctgactgaatg
aaaaggagagagtgagaggcttgcaaaggtgcttcagccgttaggtgtat
tcactgccttcgggagacctgggtttgatccccactgctcaggaaagccg
cttccagccatctgtacctcgaactccaggagctctgatgcctcctagcc
ttgtgggctctgctgcatatacatctgtagggcagaagagggcatgagat
cccctatagattggttgtgagcaaccttgtggtgctgggaatttgatctc
aggaacttttgaaagagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_125397089_125398136
seq2: B6Ng01-129G22.b_51_1093 (reverse)

seq1  TGCATTTTATGTCTCTGATGGCCATTAGGAAGTCATAGTCTTTTTTTCTG  50
      |||| ||||||| ||||| |||||||||||||||| | ||||||||||||
seq2  TGCA-TTTATGTTTCTGAAGGCCATTAGGAAGTCA-AATCTTTTTTTCTG  48

seq1  CTGGGATAGATGGCCTCTTGTCTTCTGGTCTTCTGCACCATTGAGCTATC  100
       |||||||||||| |||||||| ||| ||| ||||||||| ||||||| |
seq2  GTGGGATAGATGG-CTCTTGTC-TCT-GTC-TCTGCACCA-TGAGCTA-C  92

seq1  TGCTTCTTGTTAGTGGCATTGAAAGCCAGACTCTGTATCCGGGAGTTCAG  150
      |||||||||||||| |||||||||| |||||| | ||||| |||||||||
seq2  TGCTTCTTGTTAGTAGCATTGAAAG-CAGACT-TATATCC-GGAGTTCAG  139

seq1  ATTCCCAAGCTCTCATGCCTCTGCATCACTGA--GAGGC--GTTGAGTGT  196
      ||||||||||||||||| |||||||||||| |   ||||   ||||||||
seq2  ATTCCCAAGCTCTCATGACTCTGCATCACTTAAGAAGGCCGTTTGAGTGT  189

seq1  GATGCTGGGGCTAACTGGGTACACAGACAGGCCTGAAATCCT-GGCTGTA  245
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATGCTGGGGCTAACTGGGTACACAGACAGGCCTGAAATCCTGGGCTGTA  239

seq1  TCCCACAGACTGAAGTCCTGGCATAAGCCCCAGTGCACCAGACTACGGTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGACTGAAGTCCTGGCATAAGCCCCAGTGCACCAGACTACGGTA  289

seq1  AAACCGGAATTCCTTACTACAAAGCTGCACAGTGACCTACAGAGACTCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGGAATTCCTTACTACAAAGCTGCACAGTGACCTACAGAGACTCAG  339

seq1  -TTGTAATCTGACCTTCCAAGAATCAAGGCTGGTCAGAGCTGACTGTATT  394
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATCTGACCTTCCAAGAATCAAGGCTGGTCAGAGCTGACTGTATT  389

seq1  CAGTGGCTATGGTAATGAAGTCCTTCTGCTTCCCTCTTTACAAAAACCTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTATGGTAATGAAGTCCTTCTGCTTCCCTCTTTACAAAAACCTC  439

seq1  ACCCAAAGTAACCTGACTGCAACCAGTTATTTCCTGTCACTCTGTCTCCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGTAACCTGACTGCAACCAGTTATTTCCTGTCACTCTGTCTCCC  489

seq1  TGTCCCTGCCAGGCAAGAAAAGTCACTTTGAAATGGCCTTTTCTCCTCCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGCCAGGCAAGAAAAGTCACTTTGAAATGGCCTTTTCTCCTCCC  539

seq1  TTCCCGTTACTCAGGCTCTCCAAACGAATTACTTTATTTGACAATCTGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGTTACTCAGGCTCTCCAAACGAATTACTTTATTTGACAATCTGAG  589

seq1  TGTTGTCTGATTCTAAAATCTCAAATAAAGCCAATTTAAGATCTTTATAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTGATTCTAAAATCTCAAATAAAGCCAATTTAAGATCTTTATAT  639

seq1  TTATTGTCATTTGTTTGGGACACTGTGTTCCTTTATTTTATTTTATTTTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTCATTTGTTTGGGACACTGTGTTCCTTTATTTTATTTTATTTTA  689

seq1  TTTTCATCCCAAGTGTTGCTTGCCCCTCTCCTGGTCCCTCTGCTCAGAGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCCCAAGTGTTGCTTGCCCCTCTCCTGGTCCCTCTGCTCAGAGT  739

seq1  TCTTCATTCAATCCCCCTCCCCTTCGCCTTTGAGAGGGTGTGTCCCCCGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTCAATCCCCCTCCCCTTCGCCTTTGAGAGGGTGTGTCCCCCGC  789

seq1  CCCCCACATCCCCTTTCTCTGAGGCATCAAGTCTCTACAGGATTAGGCAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACATCCCCTTTCTCTGAGGCATCAAGTCTCTACAGGATTAGGCAC  839

seq1  ATCCTCTCCCACTGGGGCCAGACAAGGCAGTCAGTCCTCTGCTACATATG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTCCCACTGGGGCCAGACAAGGCAGTCAGTCCTCTGCTACATATG  889

seq1  TCTTGTGGCCCTTGTACCAGCCCTTGTATGCTCTTTGGTTGGTGGCTTAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGGCCCTTGTACCAGCCCTTGTATGCTCTTTGGTTGGTGGCTTAG  939

seq1  TCTCTCAGAGCTCCCTGGGGTCCACATTAGTTGACAATGTTGGTCTTCCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGAGCTCCCTGGGGTCCACATTAGTTGACAATGTTGGTCTTCCT  989

seq1  ATGGGGTTACCTATTTTATTTATTTATTTATTTATTTATTTGAGACAGGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTACCTATTTTATTTATTTATTTATTTATTTATTTGAGACAGGA  1039

seq1  ATTC  1048
      ||||
seq2  ATTC  1043

seq1: chr6_125224052_125225069
seq2: B6Ng01-129G22.g_64_1081

seq1  GAATTCTAGGACAGCCAGGGCTACCTGTCTCAGACAGACCTTGTCTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGACAGCCAGGGCTACCTGTCTCAGACAGACCTTGTCTCAAA  50

seq1  AAGATATTACTTAATGTTTTGTATGTGTGTGTTAAATATTTTGATTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTACTTAATGTTTTGTATGTGTGTGTTAAATATTTTGATTACAT  100

seq1  ATATGGATGTATGTGCCACCTGTGCCAGAGGAGGCTGAAAGAAGGCGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATGTATGTGCCACCTGTGCCAGAGGAGGCTGAAAGAAGGCGTCA  150

seq1  GGTCCCCTGGAACTGGGGCTATGGCTTCCTGAGAGCCACCACGTGGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCTGGAACTGGGGCTATGGCTTCCTGAGAGCCACCACGTGGATGC  200

seq1  TGAGAATTGGAGCTGGGTCCTCTGTAAGAGTAATAGTGCTCTCAACTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTGGAGCTGGGTCCTCTGTAAGAGTAATAGTGCTCTCAACTGCT  250

seq1  CAGCCATCTCTCCAGCTGGCTAAAATGTATTCATATTGGAGACTGGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCTCTCCAGCTGGCTAAAATGTATTCATATTGGAGACTGGCCTA  300

seq1  ATTAAGATTGTTAGCTAAGTGAATGATGACAGCAACATCATAATTACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGATTGTTAGCTAAGTGAATGATGACAGCAACATCATAATTACATT  350

seq1  CTGAATAACTGCGTTCTGAAGCGACACTCTTTTTGCCTCTGAGTTTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAACTGCGTTCTGAAGCGACACTCTTTTTGCCTCTGAGTTTCCAG  400

seq1  GATTGGGCTTTTGGTGACGTTAGAATAACGCTCACGCTGGGAACGAACCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGCTTTTGGTGACGTTAGAATAACGCTCACGCTGGGAACGAACCG  450

seq1  CACTGATTTAAACCTGGCCCCAAAGTCTCAGTGAGGACTTTGAAGACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATTTAAACCTGGCCCCAAAGTCTCAGTGAGGACTTTGAAGACTTT  500

seq1  CCATTAGCAGAGGAAACTCTGATGAAAACGACTCCCTTTCTCTGGTTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGCAGAGGAAACTCTGATGAAAACGACTCCCTTTCTCTGGTTGAT  550

seq1  GCCGACAGTGTGTTTCAGGGAACTTTTCTATCAAAGGTGTTGTGTTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACAGTGTGTTTCAGGGAACTTTTCTATCAAAGGTGTTGTGTTGGGT  600

seq1  AATTTTGTCAGCTTGAAGGACCCTGGAATCACGATGGAAGCAGATCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTCAGCTTGAAGGACCCTGGAATCACGATGGAAGCAGATCTCAG  650

seq1  GTCATGTCTGTGAGGGATATCTAGATGTGTTTAATCGAGATGGAAAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTCTGTGAGGGATATCTAGATGTGTTTAATCGAGATGGAAAGACC  700

seq1  TACCTTCAATGTGGACAGTATCATTACAGGCTGGGGTCCCTGACTGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCAATGTGGACAGTATCATTACAGGCTGGGGTCCCTGACTGAATG  750

seq1  AAAAGGAGAGAGTGAGAGGCTTGCAAAGGTGCTTCAGCCGTTAGGTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGAGAGTGAGAGGCTTGCAAAGGTGCTTCAGCCGTTAGGTGTAT  800

seq1  TCACTGCCTTCGGGAGACCTGGGTTTGATCCCCACTGCTCAGGAAAGCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCCTTCGGGAGACCTGGGTTTGATCCCCACTGCTCAGGAAAGCCG  850

seq1  CTTCCAGCCATCTGTACCTCGAACTCCAGGAGCTCTGATGCCTCCTAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCCATCTGTACCTCGAACTCCAGGAGCTCTGATGCCTCCTAGCC  900

seq1  TTGTTGGGCTCTGCTGCATATACATCTGTAGGCCAGAAGAGGGCATGAGA  950
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTG-TGGGCTCTGCTGCATATACATCTGTAGGGCAGAAGAGGGCATGAGA  949

seq1  TCCCCTTATAGA-TGGTTGTGAGCCACCTTGTGGTTGCTGGG-AGTTGAA  998
      ||||| |||||| ||||||||||| ||||||||| ||||||| | |||| 
seq2  TCCCC-TATAGATTGGTTGTGAGCAACCTTGTGG-TGCTGGGAATTTGAT  997

seq1  CTCAGG-ACCTTTGGAAGAGC  1018
      |||||| || |||| ||||||
seq2  CTCAGGAACTTTTGAAAGAGC  1018