BAC Information

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BAC

Clone NameB6Ng01-129K04
Chromosome6 (Build37)
Map Location 8,352,944 - 8,475,433
singlet/doubletdoublet
Overlap geneLOC100036521, A430035B10Rik, Glcci1
Upstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC667028
Downstream geneIca1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129K04.bB6Ng01-129K04.g
ACCDH931168DH931169
length1,1831,043
definitionDH931168|Mus musculus domesticus DNA, BAC clone: B6Ng01-129K04, 5' end.DH931169|Mus musculus domesticus DNA, BAC clone: B6Ng01-129K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,474,234 - 8,475,433)(8,352,944 - 8,353,990)
sequence
gaattcattacacgccaacaattctaccagtattatacataaaagatttc
aggaagtaatgtcaagaattgaaaacaacttgaaaataaagtaaatccac
tactagaaatattttagaatagcatcatcctttattcctctaattataaa
actggccatttcatcttaataatagtctacgaaaattactgattgaacag
ttcttgaatcaagattggcaattcccagtagatagagtgggggttccagt
gtttattgacatctaactttaaatttttagcttaaataatgggataacct
tatataattccagtgccctgcaacctgagtgaaataatccagattttagt
ttgggaaacaacttgtcattaaaaataaacattagagtggggacaattgg
aatataaacgtgagcaccacctccagatgtactagagactcatatcaatg
tgggaggaagatgaaaccacaccaacctaattacacaaaaaagatgactc
aactgtttttctctctccgcctgcttttcttaatttttcagtgtagcgat
gagatgggacaactgaacaaaatgtaaaaccactctgcaaacagggggat
ccttgagcttcccaggtacttccgcagattgctcttatttctacgaggca
gtcattacttaagatatctctaaatgtttttaaagattatgttttcattt
ttaatcagagagtaactatatatgctttggttggtgatacctaatgactt
ccaaataaatatattccatcacagtcacatgatcaacttgatgggctgtc
ttgaagcactgacaatatgtttgcctatttaacaaagcagacaagaaaga
gtgagtctcccaaggaaaactatcagagtaactgcaagacattgctggtt
aaccacctttgtttaagctctaaagtaatgtggctaatgctaactgctac
tatttgaaagctgagtggttatcacagtaacagcctatgtgtgtcttcct
ggctgacagtggactcagtatcatcacctcagggcctcagactacctcat
gttttagtcactatttctagaacttctcagtcttctgcaggatctattca
gctggcagagaagggaagatcaagttaaggagttcaactaatgacagata
aagcatcatatgccatttagcctgttagctgta

gaattccatgcccagcattgaatagagagagctagtcaggaagaaagagg
taaatagcttgaattggaataggaatggtgtggggaagaatacgggcatg
agagacctacctatgctttggtaattgtgcactgtggcacatttaagcac
atacactgaggtggcaagatagaaagcacatttctgaaaacttggaattt
ctgtgttatggaaaggcatgcacattcactaactgagcaagagcgcacct
ctgcatgtgcttcagactagttacagttgatgtacagcacctagagcaca
gcgactgtcttctcagatttcatgtgaaatgcttacagtgaggaaatcag
agcacacaggcttctcaaactggagcttattaatttagctcactctactg
ctggtttccaaggcgtgggcatgaataagctgtgctgcctccgcctagaa
actgtggagctccatactgtatccctctcagtcccaaagaacctgatagg
actctcagccacgccattttattctctttccagtctttttgtgttttcaa
gcttttcatatcatcagataaggatttaatcagtttgtgccgctataaca
aaatatcaaagattagatagcttaaacagcaagttgtttttcttcagagt
tgttgaggctggtcagtcccagactaagattctgtcacctccctttttat
gaggcttcttgccagttgctacttcttcatagtgtgtgtttggtcataga
acagagagcactatgccttaccttgataagtcacagtctcatcattaggg
accctccctcatggtttcatctcttcttaattcctggaggcccatctcca
catgcaatttcattggtatctaagttttgtagagtggggaattattctgg
ggattgaggaaaggagattcatatgatgcattcccaaggaaaagaagtaa
attcatgacctagggagtactattacttagaaagaaacctctctagcatt
gaatgtttagtactatgtaccacgtatggtcagcgccttgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8474234_8475433
seq2: B6Ng01-129K04.b_44_1226 (reverse)

seq1  TACAGCTAAACAAGCTAAATGGCATATGATGCTTTTATCCTGTTCAATGT  50
      ||||||| |||| ||||||||||||||||||| ||||| ||| |||   |
seq2  TACAGCT-AACAGGCTAAATGGCATATGATGC-TTTAT-CTG-TCA---T  43

seq1  TAGTTTGATCTTCCTTATACTTGATCTTCCCTTCTCTGCCAGCTGAAATA  100
      ||| |||| | |||||| ||||||||||||||||||||||||||| ||||
seq2  TAG-TTGAAC-TCCTTA-ACTTGATCTTCCCTTCTCTGCCAGCTG-AATA  89

seq1  GATTCTTGCAGAAGACTGAGAAGGTCTAG-AATAGTGACTAAAACATGAA  149
      || || ||||||||||||||||| ||||| |||||||||||||||||| |
seq2  GA-TCCTGCAGAAGACTGAGAAGTTCTAGAAATAGTGACTAAAACATG-A  137

seq1  GGTAGTCTGAGCCCCTGA-GTGATGATACTGAGTCCACCTGTCAGCCAGG  198
      ||||||||||| |||||| |||||||||||||||||| ||||||||||||
seq2  GGTAGTCTGAGGCCCTGAGGTGATGATACTGAGTCCA-CTGTCAGCCAGG  186

seq1  AAGACACACATTAGGCTGTTACTGTGATAACCCACTCAGCTTTCAAATAG  248
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  AAGACACACA-TAGGCTGTTACTGTGATAA-CCACTCAGCTTTCAAATAG  234

seq1  TAGCAGTTAGCATTAGCCAACATTACTTTAGAGCTTAAACAAAGGTGGTT  298
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGCAGTTAGCATTAGCC-ACATTACTTTAGAGCTTAAACAAAGGTGGTT  283

seq1  AACCAGCAATTGTCTTTGCAGTTACTCTGATAGTTTTCCTTGGGAGACTC  348
      ||||||||| |||| |||||||||||||||||||||||||||||||||||
seq2  AACCAGCAA-TGTC-TTGCAGTTACTCTGATAGTTTTCCTTGGGAGACTC  331

seq1  ACTCTTTCTTGTCTGCTTTGTTAAATAGGCAAACATATTGTCAGTGCTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCTTGTCTGCTTTGTTAAATAGGCAAACATATTGTCAGTGCTTC  381

seq1  AAGACAGCCCATCAAGTTGATCATGTGACTGTGATGGAATATATTTATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCCCATCAAGTTGATCATGTGACTGTGATGGAATATATTTATTT  431

seq1  GGAAGTCATTAGGTATCACCAACCAAAGCATATATAGTTACTCTCTGATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCATTAGGTATCACCAACCAAAGCATATATAGTTACTCTCTGATT  481

seq1  AAAAATGAAAACATAATCTTTAAAAACATTTAGAGATATCTTAAGTAATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAAACATAATCTTTAAAAACATTTAGAGATATCTTAAGTAATG  531

seq1  ACTGCCTCGTAGAAATAAGAGCAATCTGCGGAAGTACCTGGGAAGCTCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTCGTAGAAATAAGAGCAATCTGCGGAAGTACCTGGGAAGCTCAA  581

seq1  GGATCCCCCTGTTTGCAGAGTGGTTTTACATTTTGTTCAGTTGTCCCATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCCCTGTTTGCAGAGTGGTTTTACATTTTGTTCAGTTGTCCCATC  631

seq1  TCATCGCTACACTGAAAAATTAAGAAAAGCAGGCGGAGAGAGAAAAACAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGCTACACTGAAAAATTAAGAAAAGCAGGCGGAGAGAGAAAAACAG  681

seq1  TTGAGTCATCTTTTTTGTGTAATTAGGTTGGTGTGGTTTCATCTTCCTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCATCTTTTTTGTGTAATTAGGTTGGTGTGGTTTCATCTTCCTCC  731

seq1  CACATTGATATGAGTCTCTAGTACATCTGGAGGTGGTGCTCACGTTTATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGATATGAGTCTCTAGTACATCTGGAGGTGGTGCTCACGTTTATA  781

seq1  TTCCAATTGTCCCCACTCTAATGTTTATTTTTAATGACAAGTTGTTTCCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTGTCCCCACTCTAATGTTTATTTTTAATGACAAGTTGTTTCCC  831

seq1  AAACTAAAATCTGGATTATTTCACTCAGGTTGCAGGGCACTGGAATTATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAAATCTGGATTATTTCACTCAGGTTGCAGGGCACTGGAATTATA  881

seq1  TAAGGTTATCCCATTATTTAAGCTAAAAATTTAAAGTTAGATGTCAATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTATCCCATTATTTAAGCTAAAAATTTAAAGTTAGATGTCAATAA  931

seq1  ACACTGGAACCCCCACTCTATCTACTGGGAATTGCCAATCTTGATTCAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGAACCCCCACTCTATCTACTGGGAATTGCCAATCTTGATTCAAG  981

seq1  AACTGTTCAATCAGTAATTTTCGTAGACTATTATTAAGATGAAATGGCCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTCAATCAGTAATTTTCGTAGACTATTATTAAGATGAAATGGCCA  1031

seq1  GTTTTATAATTAGAGGAATAAAGGATGATGCTATTCTAAAATATTTCTAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATAATTAGAGGAATAAAGGATGATGCTATTCTAAAATATTTCTAG  1081

seq1  TAGTGGATTTACTTTATTTTCAAGTTGTTTTCAATTCTTGACATTACTTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGATTTACTTTATTTTCAAGTTGTTTTCAATTCTTGACATTACTTC  1131

seq1  CTGAAATCTTTTATGTATAATACTGGTAGAATTGTTGGCGTGTAATGAAT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATCTTTTATGTATAATACTGGTAGAATTGTTGGCGTGTAATGAAT  1181

seq1  TC  1200
      ||
seq2  TC  1183


seq1: chr6_8352944_8353990
seq2: B6Ng01-129K04.g_70_1112

seq1  GAATTCCATGCCCAGCATTGAATAGAGAGAGCTAGTCAGGAAGAAAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCCAGCATTGAATAGAGAGAGCTAGTCAGGAAGAAAGAGG  50

seq1  TAAATAGCTTGAATTGGAATAGGAATGGTGTGGGGAAGAATACGGGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCTTGAATTGGAATAGGAATGGTGTGGGGAAGAATACGGGCATG  100

seq1  AGAGACCTACCTATGCTTTGGTAATTGTGCACTGTGGCACATTTAAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTACCTATGCTTTGGTAATTGTGCACTGTGGCACATTTAAGCAC  150

seq1  ATACACTGAGGTGGCAAGATAGAAAGCACATTTCTGAAAACTTGGAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTGAGGTGGCAAGATAGAAAGCACATTTCTGAAAACTTGGAATTT  200

seq1  CTGTGTTATGGAAAGGCATGCACATTCACTAACTGAGCAAGAGCGCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTATGGAAAGGCATGCACATTCACTAACTGAGCAAGAGCGCACCT  250

seq1  CTGCATGTGCTTCAGACTAGTTACAGTTGATGTACAGCACCTAGAGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTGCTTCAGACTAGTTACAGTTGATGTACAGCACCTAGAGCACA  300

seq1  GCGACTGTCTTCTCAGATTTCATGTGAAATGCTTACAGTGAGGAAATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACTGTCTTCTCAGATTTCATGTGAAATGCTTACAGTGAGGAAATCAG  350

seq1  AGCACACAGGCTTCTCAAACTGGAGCTTATTAATTTAGCTCACTCTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACAGGCTTCTCAAACTGGAGCTTATTAATTTAGCTCACTCTACTG  400

seq1  CTGGTTTCCAAGGCGTGGGCATGAATAAGCTGTGCTGCCTCCGCCTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCCAAGGCGTGGGCATGAATAAGCTGTGCTGCCTCCGCCTAGAA  450

seq1  ACTGTGGAGCTCCATACTGTATCCCTCTCAGTCCCAAAGAACCTGATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGAGCTCCATACTGTATCCCTCTCAGTCCCAAAGAACCTGATAGG  500

seq1  ACTCTCAGCCACGCCATTTTATTCTCTTTCCAGTCTTTTTGTGTTTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGCCACGCCATTTTATTCTCTTTCCAGTCTTTTTGTGTTTTCAA  550

seq1  GCTTTTCATATCATCAGATAAGGATTTAATCAGTTTGTGCCGCTATAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCATATCATCAGATAAGGATTTAATCAGTTTGTGCCGCTATAACA  600

seq1  AAATATCAAAGATTAGATAGCTTAAACAGCAAGTTGTTTTTCTTCAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAAAGATTAGATAGCTTAAACAGCAAGTTGTTTTTCTTCAGAGT  650

seq1  TGTTGAGGCTGGTCAGTCCCAGACTAAGATTCTGTCACCTCCCTTTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGGCTGGTCAGTCCCAGACTAAGATTCTGTCACCTCCCTTTTTAT  700

seq1  GAGGCTTCTTGCCAGTTGCTACTTCTTCATAGTGTGTGTTTGGTCATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTCTTGCCAGTTGCTACTTCTTCATAGTGTGTGTTTGGTCATAGA  750

seq1  ACAGAGAGCACTATGCCTTACCTTGATAAGTCACAAGTCTCATCATTAGG  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAGAGAGCACTATGCCTTACCTTGATAAGTCAC-AGTCTCATCATTAGG  799

seq1  GACCCTCCCTCATGGTTTCATCTCTTCTTAATTCCTGGAGGCCCCATCTC  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACCCTCCCTCATGGTTTCATCTCTTCTTAATTCCTGGAGG-CCCATCTC  848

seq1  CACATGCAATTTCATTGGTATCTAAG-TCTGTAGAGTGGGGAATTA-TCT  898
      |||||||||||||||||||||||||| | ||||||||||||||||| |||
seq2  CACATGCAATTTCATTGGTATCTAAGTTTTGTAGAGTGGGGAATTATTCT  898

seq1  GGGGATTGAGG-AAGGAGATTCATATGATGCATTCCCAAAGAAAAG-AGT  946
      ||||||||||| ||||||||||||||||||||||||||| |||||| |||
seq2  GGGGATTGAGGAAAGGAGATTCATATGATGCATTCCCAAGGAAAAGAAGT  948

seq1  AAATCCATGACCTAGGGAAGTACTATTACTTAGAAAAGAAAACCTCTCCT  996
      |||| |||||||||||| ||||||||||||||||||   |||||||||  
seq2  AAATTCATGACCTAGGG-AGTACTATTACTTAGAAA--GAAACCTCTC--  993

seq1  TAGCATTG-ATGTTTAAGTACTATGTACCACCGTATGGTCAGCGCCTTGT  1045
      |||||||| |||||| |||||||||||||| |||||||||||||||||||
seq2  TAGCATTGAATGTTT-AGTACTATGTACCA-CGTATGGTCAGCGCCTTGT  1041

seq1  CA  1047
      ||
seq2  CA  1043


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