BAC Information

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BAC

Clone NameB6Ng01-129M07
Chromosome6 (Build37)10 (Build37)
Map Location 18,834,982 - 18,835,51652,890,307 - 52,890,731
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129M07.bB6Ng01-129M07.g
ACCDH931267DH931268
length980688
definitionDH931267|Mus musculus domesticus DNA, BAC clone: B6Ng01-129M07, 5' end.DH931268|Mus musculus domesticus DNA, BAC clone: B6Ng01-129M07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,834,982 - 18,835,516)(52,890,307 - 52,890,731)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctattcgttgaagaattgagttggaatttta
atggggattgcattgaatctgtagattgctttggcaagatagccatttta
caatgttggtcctgccatccatgagcatgggagatctttccatcttctga
gatctcttaaatttcttttcctcatggacttgagtttttaatatacagat
ctttcacttcttcgtagagtcacgccgaggtattttatattatttgtggc
tattgagaacggtgttgtttcctaatttct
gaattctgtgctccctctaggtgcagcagaaaggagtgttcttatttcag
attcattattcctgcttgttattgatagtcagttgaatgtttaaactgtc
ctctgtgtgcttctatgaaaagacactttttgtcattcttagcttttctt
tgttattttatgcagcttgaactcatgagaacgttactcatatgaacatt
attaaccctcaaagtatatgcagtctgctgttgtgaattaaatttgctac
agcatgacacaaatctgccttctttattggctccattctcccaggtccca
ctgcctgtaaagcagtgactgtcacctacatctggagttaaccaacctca
agagactgggtagatgtgcctgtgaggaatattttcttaattaaataatt
tgcagggggaagacccacttttaatctggatcttttgaggtgggaagagt
cacctttaatctgggccacaccttctgctggcatcctatgaaaaagacac
agaaggaggaagcttgctccctttgcctgcttgctctcactcttgagggc
aagttcattcttccactggcattagagcctgcttcttcaggatattgatg
tatactgaagaccagctgagacatccagctttgtggactggattcatgga
ccttccatttggtagacagccattgttgaactagctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18834982_18835516
seq2: B6Ng01-129M07.b_500_1026 (reverse)

seq1  AGAAATTAGGGAAACAACACCCTTCTCAATAGCCACAAATAATATAAAAT  50
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  AGAAATTA-GGAAACAACACCGTTCTCAATAGCCACAAATAATATAAAAT  49

seq1  ATCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAAC  100
      | || ||||||||||| || || ||||||||||||||||||  |||||||
seq2  ACCTCGGCGTGACTCT-ACGAA-GAAGTGAAAGATCTGTATATTAAAAAC  97

seq1  TTCAAATCTCTGAAG-AAAGAAATTAAAGAAGATCTCAGAAGATGGAAAA  149
       |||| ||  ||| | ||||||||| ||| ||||||||||||||||||| 
seq2  -TCAAGTCCATGAGGAAAAGAAATTTAAG-AGATCTCAGAAGATGGAAAG  145

seq1  ATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTCTC  199
      |||||||||||||||||| |||||||| ||||||||| ||||||||| ||
seq2  ATCTCCCATGCTCATGGA-TGGCAGGACCAACATTGT-AAAATGGCTATC  193

seq1  TTGCCAAAAGCAATCTGCAGATTCAATGCAATCCCCATCAAAATTCCAAC  249
      ||||| |||||||||| ||||||||||||||||||||| |||||||||||
seq2  TTGCC-AAAGCAATCTACAGATTCAATGCAATCCCCATTAAAATTCCAAC  242

seq1  TCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATA  299
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCAATTCTTCAACGAA-TAGAAGGAGCAATTTGCAAATTCATCTGGAATA  291

seq1  ACAAAAAACCTAGGATAGCAAAACCTCTTCTCAAGGATAAAAGAACCTCT  349
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  ACAAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCT  341

seq1  GGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGGT  399
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGAT  391

seq1  AAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATA  449
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACCAATGGAATA  441

seq1  GAATTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTC  499
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTC  491

seq1  GACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGAC  535
      ||||||||||| ||||||||||||||||||||||||
seq2  GACAAGGGAGCCAAAACCATCCAGTGGAAGAAAGAC  527

seq1: chr10_52890307_52890731
seq2: B6Ng01-129M07.g_472_757 (reverse)

seq1  CCAGCTAGTCCAACAATGGCTGCCTACC-AACAAAAAGTCCAAGAATCTA  49
      ||||||||| |||||||||||| ||||| ||   || ||||| |||||  
seq2  CCAGCTAGTTCAACAATGGCTGTCTACCAAATGGAAGGTCCATGAATC--  48

seq1  GGAGTTGTTCAGTCCACAAGACTTCATCCCTC-------------TAT-G  85
               ||||||||||  ||  ||  |||             |||  
seq2  ---------CAGTCCACAAAGCTGGATGTCTCAGCTGGTCTTCAGTATAC  89

seq1  ATGAACA-CCT-AAGAAGTAGGCTTTACTGCCAATGAAAGAATGGATTTG  133
      || || | ||| |||||| ||||| || ||||| || ||||||| | |||
seq2  ATCAATATCCTGAAGAAGCAGGCTCTAATGCCAGTGGAAGAATGAACTTG  139

seq1  ACATTCAGAATAAGAGCA---AGTCAAGGGCA--AATGTTC---------  169
       | |  ||| | ||||||   || ||| || |  ||  |||         
seq2  CCCTCAAGAGTGAGAGCAAGCAGGCAAAGGGAGCAAGCTTCCTCCTTCTG  189

seq1  -GTTTCTTCCATA-GAGCCTACCACCAGCTATGGCCCAGATTAAAGGTGA  217
       || | || |||| ||  | | ||  || | |||||||||||||||||||
seq2  TGTCTTTTTCATAGGATGCCAGCAGAAGGTGTGGCCCAGATTAAAGGTGA  239

seq1  GTCTTCCCACCTCAAAAGATCCAGATTACATTAGCAGG--------CAGA  259
       ||||||||||||||||||||||||||| |  ||  ||        | | 
seq2  CTCTTCCCACCTCAAAAGATCCAGATTAAA--AGTGGGTCTTCCCCCTG-  286

seq1  AAACAGCCAGAGTCTGGCATGTAGGTACCTCTATGAAAAGCAAGTATGTG  309
                                                        
seq2  --------------------------------------------------  286

seq1  GTGAAGAAATGGAAGAGAGAGAAGTAGAGCAGTTTGTGTACTATGGGGAG  359
                                                        
seq2  --------------------------------------------------  286

seq1  AGGTAGAACTAGAGAAAAGATAGCAGTGAGGAACAGCCTGATGTGAATAG  409
                                                        
seq2  --------------------------------------------------  286

seq1  CCTGTGCTTCCCCCTG  425
                      
seq2  ----------------  286