BAC Information

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BAC

Clone NameB6Ng01-129M18
Chromosome6 (Build37)
Map Location 29,503,362 - 29,661,895
singlet/doubletdoublet
Overlap geneTnpo3, Tspan33
Upstream geneSnd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5
Downstream geneSmo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129M18.bB6Ng01-129M18.g
ACCDH931288DH931289
length1,0771,100
definitionDH931288|Mus musculus domesticus DNA, BAC clone: B6Ng01-129M18, 5' end.DH931289|Mus musculus domesticus DNA, BAC clone: B6Ng01-129M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,660,819 - 29,661,895)(29,503,362 - 29,504,472)
sequence
gaattctgattcatttttctccccccccccccttttttgggagggaggtg
ttgttttgttttcaaggtggggtcttattaggtagctcaggttggtctgg
aatgcactctgtagaccaggctgtccaggaactcagagatccacctgcct
ttgcctcctgaatgctaggaataaagggatacaccaatacaccttgctac
acttttcctcctttttaaaaaatagacagatttctcactactagtagtcc
catctacactggaacttacaaggtagacagtgctggactcaaactagtgg
aaatcactctgcctccagtttcccagtgctgggattaaaggaaatgctgg
ttcttaattaggactgttgcctcgggcagccgacctccagatgcgggaag
catggttcagaacagggtctgccttccctctgcttcccacagctagttca
ataaacagggtttgagtaacagtctcttcaagttgtctgtggttttgatc
cctgggtgctacttagttgtttaccatttaagtatgtaggttattttaat
gttcctcatgtttattgattccccccttcaccccaccccaccccccacca
tggcatcaggttgtcaaaggaaaacaccttatagtcatgaaattctcttt
aaatagattgatgttaaaggccatttatccatccctagggggaacctttc
aaaggctgatgcttcccaggggaaaatgtgctgtggttaattaatcagta
ggaacttccccttcctccctctggtacccagaggcctccaggctcccagt
gttaccttgtctgagaagacgaagcccaggatgccagcagccagctgcag
cagaacacgatggtgaggcagagggagaactatggcaagacaaggaacag
cgtcactgctctgggaagcagccctttccagggccattgagaggcagcta
gactcttctccacacccccaatcacaaagattcctgcttctaggacaatg
cttatggaaggtggtcactctacgctgtccacccatagcagacctcttgc
atcagggggcgacagcacagggtagga
gaattcagcggttaaggttttttttccctttacaagtcttcataatggta
caatggcctaaatggacctcctacttggtgtatctctatgtatctatgta
tctatctatcttttgctactagtgtgaattgtgataacatgctaaaactt
catagttaaatgtgacttgcctaaaccatgcatttaaaaagttcctttaa
accatggctatattggtagtgatcacacagaaacactttgtcatctacac
acacactcacacacacacacccttgatatttgttctattacttcctggga
agagtcatagatgtgtgatagatctgggtcagttgatatagaaagcatac
atataatatgagttaatacacatatgatatgactttagactccagtttcc
ttgtactgtctgtctctgaacatatgcactgagcaaataacaatggcaac
tataggtaccattatgtatttttattatttacttattggttctggaagaa
agttttacgtaacagttttacgtttattttcctaaatggcttacatatta
acattaaaattataaatcatatattttaaaaaataactcataggttatta
tactgtgtcactatacttagagttctgacatggtagctggagagatgact
ctggtttggttcccagcactcacacagcagcccagttccaagggaattga
tgccctcttcagactcctgcagtactaggcacatttattgtttatatacg
tgcaggaattcacatatacccataaaataaaaataaattaaaatttttat
gtaatatacacagtaacatttatgactatgtggctagtactgaaatcact
tgagaaagagaagtagtaactgtctgtagtaactgttacccattgagcat
gagggtgagactagcatgtatgagcagcagctcactttttaaatactcac
tgggaaaaggacatggtcaaatagacccaaagggaatcaatccagtggta
tatactgtggtttactttatattttgtattcactatttatagtcactcgg
attcagagtgatggatactggatatctaactggatataaactaaatatgc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29660819_29661895
seq2: B6Ng01-129M18.b_47_1123 (reverse)

seq1  TCCTACCCTGTGCTGTCCGCCCCTCGATGC-AGAGTTCTGCTCTGGGTGG  49
      |||||||||||||||| ||||||  ||||| |||| |||||| |||||||
seq2  TCCTACCCTGTGCTGT-CGCCCCCTGATGCAAGAGGTCTGCTATGGGTGG  49

seq1  -CAGCGTAGGGTGGCCACC-TCCAT-AGCATTGTCCTAGAGGCAGGAATC  96
       |||||||| ||| ||||| ||||| |||||||||||||| |||||||||
seq2  ACAGCGTAGAGTGACCACCTTCCATAAGCATTGTCCTAGAAGCAGGAATC  99

seq1  TTTGTTGTATTGGGGGTGTGGAGAAGAGTCTAGCTGCCTCTCATTGGCCC  146
      |||||   ||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTGT--GATTGGGGGTGTGGAGAAGAGTCTAGCTGCCTCTCAATGGCCC  147

seq1  TGGAAAGGGCTGCTTCCCAGAGCAGTGACGCTGTTCCTTGTCTTGCCATA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGGCTGCTTCCCAGAGCAGTGACGCTGTTCCTTGTCTTGCCATA  197

seq1  GTTCTCCCTCTGCCTCACCATCGTGTTCCTGCTGCAGCTGGCTGCTGGCA  246
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTTCTCCCTCTGCCTCACCATCGTGTT-CTGCTGCAGCTGGCTGCTGGCA  246

seq1  TCCTGGGCTTCGTCTTCTCAGACAAGGTAACACTGGGAGCCTGGAGGCCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCTTCGTCTTCTCAGACAAGGTAACACTGGGAGCCTGGAGGCCT  296

seq1  CTGGGTACCAGAGGGAGGAAGGGGAAGTTCCTACTGATTAATTAACCACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTACCAGAGGGAGGAAGGGGAAGTTCCTACTGATTAATTAACCACA  346

seq1  GCACATTTTCCCCTGGGAAGCATCAGCCTTTGAAAGGTTCCCCCTAGGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTTTCCCCTGGGAAGCATCAGCCTTTGAAAGGTTCCCCCTAGGGA  396

seq1  TGGATAAATGGCCTTTAACATCAATCTATTTAAAGAGAATTTCATGACTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAATGGCCTTTAACATCAATCTATTTAAAGAGAATTTCATGACTA  446

seq1  TAAGGTGTTTTCCTTTGACAACCTGATGCCATGGTGGGGGGTGGGGTGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGTTTTCCTTTGACAACCTGATGCCATGGTGGGGGGTGGGGTGGG  496

seq1  GTGAAGGGGGGAATCAATAAACATGAGGAACATTAAAATAACCTACATAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGGGGAATCAATAAACATGAGGAACATTAAAATAACCTACATAC  546

seq1  TTAAATGGTAAACAACTAAGTAGCACCCAGGGATCAAAACCACAGACAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGGTAAACAACTAAGTAGCACCCAGGGATCAAAACCACAGACAAC  596

seq1  TTGAAGAGACTGTTACTCAAACCCTGTTTATTGAACTAGCTGTGGGAAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAGACTGTTACTCAAACCCTGTTTATTGAACTAGCTGTGGGAAGC  646

seq1  AGAGGGAAGGCAGACCCTGTTCTGAACCATGCTTCCCGCATCTGGAGGTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGGCAGACCCTGTTCTGAACCATGCTTCCCGCATCTGGAGGTC  696

seq1  GGCTGCCCGAGGCAACAGTCCTAATTAAGAACCAGCATTTCCTTTAATCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCCGAGGCAACAGTCCTAATTAAGAACCAGCATTTCCTTTAATCC  746

seq1  CAGCACTGGGAAACTGGAGGCAGAGTGATTTCCACTAGTTTGAGTCCAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGGGAAACTGGAGGCAGAGTGATTTCCACTAGTTTGAGTCCAGC  796

seq1  ACTGTCTACCTTGTAAGTTCCAGTGTAGATGGGACTACTAGTAGTGAGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTACCTTGTAAGTTCCAGTGTAGATGGGACTACTAGTAGTGAGAA  846

seq1  ATCTGTCTATTTTTTAAAAAGGAGGAAAAGTGTAGCAAGGTGTATTGGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTATTTTTTAAAAAGGAGGAAAAGTGTAGCAAGGTGTATTGGTG  896

seq1  TATCCCTTTATTCCTAGCATTCAGGAGGCAAAGGCAGGTGGATCTCTGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTTTATTCCTAGCATTCAGGAGGCAAAGGCAGGTGGATCTCTGAG  946

seq1  TTCCTGGACAGCCTGGTCTACAGAGTGCATTCCAGACCAACCTGAGCTAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGACAGCCTGGTCTACAGAGTGCATTCCAGACCAACCTGAGCTAC  996

seq1  CTAATAAGACCCCACCTTGAAAACAAAACAACACCTCCCTCCCAAAAAAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAGACCCCACCTTGAAAACAAAACAACACCTCCCTCCCAAAAAAG  1046

seq1  GGGGGGGGGGGAGAAAAATGAATCAGAATTC  1077
      |||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGGAGAAAAATGAATCAGAATTC  1077

seq1: chr6_29503362_29504472
seq2: B6Ng01-129M18.g_70_1169

seq1  GAATTCAGCGGTTAAGGTTTTTTTTCCCTTTACAAGTCTTCATAATGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCGGTTAAGGTTTTTTTTCCCTTTACAAGTCTTCATAATGGTA  50

seq1  CAATGGCCTAAATGGACCTCCTACTTGGTGTATCTCTATGTATCTATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCCTAAATGGACCTCCTACTTGGTGTATCTCTATGTATCTATGTA  100

seq1  TCTATCTATCTTTTGCTACTAGTGTGAATTGTGATAACATGCTAAAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTTTTGCTACTAGTGTGAATTGTGATAACATGCTAAAACTT  150

seq1  CATAGTTAAATGTGACTTGCCTAAACCATGCATTTAAAAAGTTCCTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTAAATGTGACTTGCCTAAACCATGCATTTAAAAAGTTCCTTTAA  200

seq1  ACCATGGCTATATTGGTAGTGATCACACAGAAACACTTTGTCATCTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGCTATATTGGTAGTGATCACACAGAAACACTTTGTCATCTACAC  250

seq1  ACACACTCACACACACACACCCTTGATATTTGTTCTATTACTTCCTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCACACACACACACCCTTGATATTTGTTCTATTACTTCCTGGGA  300

seq1  AGAGTCATAGATGTGTGATAGATCTGGGTCAGTTGATATAGAAAGCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCATAGATGTGTGATAGATCTGGGTCAGTTGATATAGAAAGCATAC  350

seq1  ATATAATATGAGTTAATACACATATGATATGACTTTAGACTCCAGTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATATGAGTTAATACACATATGATATGACTTTAGACTCCAGTTTCC  400

seq1  TTGTACTGTCTGTCTCTGAACATATGCACTGAGCAAATAACAATGGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTGTCTGTCTCTGAACATATGCACTGAGCAAATAACAATGGCAAC  450

seq1  TATAGGTACCATTATGTATTTTTATTATTTACTTATTGGTTCTGGAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTACCATTATGTATTTTTATTATTTACTTATTGGTTCTGGAAGAA  500

seq1  AGTTTTACGTAACAGTTTTACGTTTATTTTCCTAAATGGCTTACATATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACGTAACAGTTTTACGTTTATTTTCCTAAATGGCTTACATATTA  550

seq1  ACATTAAAATTATAAATCATATATTTTAAAAAATAACTCATAGGTTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAAATTATAAATCATATATTTTAAAAAATAACTCATAGGTTATTA  600

seq1  TACTGTGTCACTATACTTAGAGTTCTGACATGGTAGCTGGAGAGATGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTCACTATACTTAGAGTTCTGACATGGTAGCTGGAGAGATGACT  650

seq1  CTGGTTTGGTTCCCAGCACTCACACAGCAGCCCAGTTCCAAGGGAATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGGTTCCCAGCACTCACACAGCAGCCCAGTTCCAAGGGAATTGA  700

seq1  TGCCCTCTTCAGACTCCTGCAGGTACTAGGCACATTTATTGTTTATATAC  750
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGCCCTCTTCAGACTCCTGCA-GTACTAGGCACATTTATTGTTTATATAC  749

seq1  GTGCAGGAATTCACATATACCCATAAAATAAAAATAAATTAAAATTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGAATTCACATATACCCATAAAATAAAAATAAATTAAAATTTTTA  799

seq1  TGTAATATACACAGTAACATTTATGACTATGTGGCTAGTACTGAAATCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATACACAGTAACATTTATGACTATGTGGCTAGTACTGAAATCAC  849

seq1  TTGAAGAAAGAGAAGTAGTAACTGTCTGTAGTAACTGTTACCCATTGAGC  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-AGAAAGAGAAGTAGTAACTGTCTGTAGTAACTGTTACCCATTGAGC  898

seq1  ATGAGGGTGAGACTAGCATGTATGAGCAGCAGCTCCACTTTTTAAATACT  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGAGGGTGAGACTAGCATGTATGAGCAGCAGCT-CACTTTTTAAATACT  947

seq1  CAACTGGAAAAAGGACATGGTCAAATAGACCCAAAGGGGAAATCAATCCA  1000
      | ||||| ||||||||||||||||||||||||||||||  ||||||||||
seq2  C-ACTGGGAAAAGGACATGGTCAAATAGACCCAAAGGG--AATCAATCCA  994

seq1  GGTGTATATACTGTGGTTTACTTTTAATATTTGTATTCACTAATTTATAG  1050
      |  |||||||||||||||||||||  || |||||||||||| ||||||||
seq2  GTGGTATATACTGTGGTTTACTTTATAT-TTTGTATTCACT-ATTTATAG  1042

seq1  TCCACTACAGATTCCAGAGTGATTGTATACTGAATAATCTAACTGGATAT  1100
      | |||| | |||| |||||||| || |||||| || ||||||||||||||
seq2  T-CACT-CGGATT-CAGAGTGA-TGGATACTGGAT-ATCTAACTGGATAT  1087

seq1  -AACT-AATATGC  1111
       |||| |||||||
seq2  AAACTAAATATGC  1100