BAC Information

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BAC

Clone NameB6Ng01-130A02
Chromosome6 (Build37)4 (Build37)
Map Location 18,835,756 - 18,835,96817,153,460 - 17,154,475
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130A02.bB6Ng01-130A02.g
ACCDH931433DH931434
length9781,054
definitionDH931433|Mus musculus domesticus DNA, BAC clone: B6Ng01-130A02, 5' end.DH931434|Mus musculus domesticus DNA, BAC clone: B6Ng01-130A02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,756 - 18,835,968)(17,153,460 - 17,154,475)
sequence
gaattctttgttcagctctgagccacattttttaatagggttatttaatt
ttctggagtccaccttcttgagttctttatatatattggttattattccc
ctatctaatttaggatagagaaagatcctttcccaatctcttggtggtct
tttttgtcttattgagggtgtcagcagttctattagcagtgtcctttacc
tgacagatttttttccagttttatgaggtcccatttatcaattgttgatc
ttagagcctgagccattgatgatctgaacaggaaatagtctccggtatct
attctttcaaagctatttccttgtttctcctctattagatttagtgtatc
cagttgaggtccaccattcacttgaacttgagttttatacagggtgtaca
acatgtgtaacagttgtacttgcattcttttacatgcagacagccagtta
ggccagcaccatttgttgaatatgctttctcttctccactgtaaattcgt
gtcatctttgttaaaattcaagtgcatgtaagtatatgtttttatgtctg
ggtatttgattcgtttccattgactaacttttttgtgtctgtataaatca
cctgaagtgattgctttgttttgttttgttttgttttgttttgttttgtt
taatcactattgctctgtaatgcagcttgaggtcaggcatgttggtttct
cctgagattctcttattgttcaggatcattttgcttatcctgagtttctt
gtttttttatattaagttggtcattactctttcaaattcagtaaaaagtt
gatggaattttgatgggaattgcattgaatctgtagattgcatttagtta
tttggccatttcactgtgatagtcatatagatccatggtacatctttcta
ccttctgatatcttcctccacttcactctttagagacttgaacttcttgt
catataatataggtctttcacttacttg
gaattctaggaaaatcagagttatacagagagaacccatctcaaaacaaa
caataacagcaacaacaaaagtcagtagagtagaccatcaaacttgagct
acagaaccctgtaagaagacagactatgcagatgtaatctggtgatgatg
tccttgaaaagcttatcaatggtttccaaacatacattaagagcatgttt
tcaaagtagatgaaatttggttgcaggttacaactcagttctttaaattc
atgttatttagcatatcccataatgagtagtaaaacagacactcaggcat
aagaaccacatcacatgtttagatagacactctgagatgaaagttttcat
atctcattactaatccttgtagtcatcttcagccaactcataaataatgt
atatcttctcaaagaaactaaatacaaaaatatagctggtactataaatc
tgttacatagtcataccactgtcactactttacaaaccccaccttaaaac
tcacttatttgcatcataatttactaatcatttagttcaatgtaacatca
caaagaaatatgaaattagtatatcatactatagcatatcattaattagt
atatcacactatgctaacaacaaattctaattcattaatgttattcaaat
aagtaagtcagttcaaaaaataaaacctgcaaagtgtttctgatattgat
aaaatacttttctttgacacatatttagatcattttatatataagataac
atattcttataatagatatattggtgtgtttgtttaaatgtggtttaaaa
aaactaatagcgacactgcacaaccattaacagatttaaacacatcctac
taaaaatgagaacattgaggtttttgtggaaggattcaaactgaatttat
attcactatcttgtgccaagatttcttgtttcagtcatgttaaataaaca
tgagaaagaggcacttgcacataatacatgagtcactattttcctatatt
aaccccacatgttctagtagcagaggagagacacttaaaccccacatgtc
actt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835756_18835968
seq2: B6Ng01-130A02.b_46_281 (reverse)

seq1  AAATGGGACCTAATGAAACT-CCAAAGTTTCTGCAAGGCAAA--------  41
      ||||||||||| || |||||   |||   ||||  ||| |||        
seq2  AAATGGGACCTCATAAAACTGGAAAAAAATCTGTCAGGTAAAGGACACTG  50

seq1  -------------AGACACCGTCAATAAGAC-AAAAAGACCACCAACAGA  77
                    |||||| |||||||||| |||||||||||||| |||
seq2  CTAATAGAACTGCTGACACCCTCAATAAGACAAAAAAGACCACCAAGAGA  100

seq1  TTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCA  127
      ||||||||||||||||  ||||||||||| |||||||||| ||||| |||
seq2  TTGGGAAAGGATCTTTCTCTATCCTAAATTAGATAGGGGAATAATAACCA  150

seq1  ACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCC  177
      | |||||||||||||||||||||||||||| |||||||| ||||||||| 
seq2  ATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATTAAATAACCCT  200

seq1  ATTAATAAATGGGGCTCAGAACTGAACAAAGAATTC  213
      ||||| ||||| |||||||| |||||||||||||||
seq2  ATTAAAAAATGTGGCTCAGAGCTGAACAAAGAATTC  236

seq1: chr4_17153460_17154475
seq2: B6Ng01-130A02.g_65_1113

seq1  GAATTCTAGGAAAATCAGAGTTATACAGAGAGAACCCATCTCAAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAAAATCAGAGTTATACAGAGAGAACCCATCTCAAAACAAA  50

seq1  CAATAACAGCAACAACAAAAGTCAGTAGAGTAGACCATCAAACTTGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACAGCAACAACAAAAGTCAGTAGAGTAGACCATCAAACTTGAGCT  100

seq1  ACAGAACCCTGTAAGAAGACAGACTATGCAGATGTAATCTGGTGATGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACCCTGTAAGAAGACAGACTATGCAGATGTAATCTGGTGATGATG  150

seq1  TCCTTGAAAAGCTTATCAATGGTTTCCAAACATACATTAAGAGCATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAAAAGCTTATCAATGGTTTCCAAACATACATTAAGAGCATGTTT  200

seq1  TCAAAGTAGATGAAATTTGGTTGCAGGTTACAACTCAGTTCTTTAAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTAGATGAAATTTGGTTGCAGGTTACAACTCAGTTCTTTAAATTC  250

seq1  ATGTTATTTAGCATATCCCATAATGAGTAGTAAAACAGACACTCAGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTTAGCATATCCCATAATGAGTAGTAAAACAGACACTCAGGCAT  300

seq1  AAGAACCACATCACATGTTTAGATAGACACTCTGAGATGAAAGTTTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCACATCACATGTTTAGATAGACACTCTGAGATGAAAGTTTTCAT  350

seq1  ATCTCATTACTAATCCTTGTAGTCATCTTCAGCCAACTCATAAATAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTACTAATCCTTGTAGTCATCTTCAGCCAACTCATAAATAATGT  400

seq1  ATATCTTCTCAAAGAAACTAAATACAAAAATATAGCTGGTACTATAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTCTCAAAGAAACTAAATACAAAAATATAGCTGGTACTATAAATC  450

seq1  TGTTACATAGTCATACCACTGTCACTACTTTACAAACCCCACCTTAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATAGTCATACCACTGTCACTACTTTACAAACCCCACCTTAAAAC  500

seq1  TCACTTATTTGCATCATAATTTACTAATCATTTAGTTCAATGTAACATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTATTTGCATCATAATTTACTAATCATTTAGTTCAATGTAACATCA  550

seq1  CAAAGAAATATGAAATTAGTATATCATACTATAGCATATCATTAATTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAATATGAAATTAGTATATCATACTATAGCATATCATTAATTAGT  600

seq1  ATATCACACTATGCTAACAACAAATTCTAATTCATTAATGTTATTCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACACTATGCTAACAACAAATTCTAATTCATTAATGTTATTCAAAT  650

seq1  AAGTAAGTCAGTTCAAAAAATAAAACCTGCAAAGTGTTTCTGATATTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGTCAGTTCAAAAAATAAAACCTGCAAAGTGTTTCTGATATTGAT  700

seq1  AAAATACTTTTCTTTGACACATATTTAGATCATTTTATATATAAGATAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTTTCTTTGACACATATTTAGATCATTTTATATATAAGATAAC  750

seq1  ATATTCTTATAATAGATATATTGGTGTGTTTGTTTAAATGTGGTTTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTATAATAGATATATTGGTGTGTTTGTTTAAATGTGGTTTAAAA  800

seq1  AAACTAATAGCGACACTGCACAACCATTAACAGATTTAAACACATCCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATAGCGACACTGCACAACCATTAACAGATTTAAACACATCCTAC  850

seq1  TAAAAATGAGAACATTGAGGCTTTTGTGGAAGGAATTCAAACTGAATTTA  900
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  TAAAAATGAGAACATTGAGGTTTTTGTGGAAGG-ATTCAAACTGAATTTA  899

seq1  TATTCACTAATCTGTGCCAAGATTTCTTGTTTCAGTCATG-TAAATAAAC  949
      |||||||||   |||||||||||||||||||||||||||| |||||||||
seq2  TATTCACTATCTTGTGCCAAGATTTCTTGTTTCAGTCATGTTAAATAAAC  949

seq1  ATGAGAAAGAAGGCAACTTGCACATAATACATGAAGTCACTATTTTCCTA  999
      ||||||||| |||| |||||||||||||||||| ||||||||||||||| 
seq2  ATGAGAAAG-AGGC-ACTTGCACATAATACATG-AGTCACTATTTTCCT-  995

seq1  ATATTAACCCCACATGT---------------------------------  1016
      |||||||||||||||||                                 
seq2  ATATTAACCCCACATGTTCTAGTAGCAGAGGAGAGACACTTAAACCCCAC  1045

seq1  ----  1016
          
seq2  ATGT  1049