BAC Information

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BAC

Clone NameB6Ng01-130C23
Chromosome6 (Build37)
Map Location 56,360,754 - 56,502,093
singlet/doubletdoublet
Overlap genenone
Upstream geneAdcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130C23.bB6Ng01-130C23.g
ACCDH931563DH931564
length1,0391,030
definitionDH931563|Mus musculus domesticus DNA, BAC clone: B6Ng01-130C23, 5' end.DH931564|Mus musculus domesticus DNA, BAC clone: B6Ng01-130C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,501,049 - 56,502,093)(56,360,754 - 56,361,791)
sequence
gaattcattcatacagatgccagttctgttcatgtctaagaaagtctttt
cttatgctactgtgtgtgatgctacaggaatgaaagcaagaaaagggagg
aaggtgaggactgatggagaggatcaaatatatgatgtggtggaagaaat
taactttgtaaaagtcaacactgtgtataaagaatatatgccaataaaag
ttcatatacccctaaagagcaagagcttacaactttctagtttctttaac
tctaaatattttctttctaaacattctagtgctagtaaaatttttattta
ttttttcatttaaagacattatgatttaacttctagtgtaaacatattct
aatctagattaattacacagagcacagagtagtggttatatagcaccatg
atctatataattctctatctaccatgttggctgtttgagctcatggaaat
tacttgcttattagagatttctgttgtacattttttttttaatttctctt
tgtatttcagcttttagctttatgtataggttggtgcactgtaatttact
ttgggttttttttttttttgcattgacattttttattaaagccaactgtt
ttttaattattattttttaaaacaatagcacaaaaatgtttcaaggaagc
agtctcacaatctgatgacattccgaaatacattaagctaccccaaatag
gaatttctattaacacaaaataaaaggattcagaaaaaaataaaagggag
agagaagaaaaaggggtgtggagaggggctgagacttagtaaaaacacac
tgggttaggtggcggggcttgttagtgggcatactggtgacacagcagtg
cagcagacatctgggccccacagcagtccccactggcctctcatatgcgg
aagtggtgagccaggctcactggttctgttcggaagaggtgcagcattgg
cttgtcagtaaccggacagtttgagcagaaaggcctagctgataatctta
tttccaccctttcgctcttatgcattcaaggttccttaa
gaattctcttcagtcctatgacctgtgtgtcttcagcaacagtcttgaca
tcaagtaggcaaccatgagcaactgcaatagtttgtatttgagagtaggg
gatctctaggacaccccagattgaaaaacaagaattctgagtcaaagggt
ctggctaggagttacgatagtttggtattgcagtcctagtgaagacatgg
ctcaaaagtacaattttgacttcatgaatttctctcttgctactcaactt
caaaataatctcaacagtcttttactttcctagctcccttttgcccccca
cccaaaaaaaaaaaaaaaaaaaaaaaacttctctggtcccttagcaccct
ccaacaatccggcaagcaggaaatagatttctttataactctttcttttc
tccatctacttctggtataggagataagataaaacttaaatagcattatc
atgcacattatcttgaggaaaaaaggagaaaagctataacccacaaaatg
aaagcttctcagcctttaatacctcccacaggggaggtagtgacaataag
cataagggcatctcctcagctgtcctccttcagctcccattgtaatgaga
attataataagtacactattgttactagctttcattggacatttatctat
atctacctatagtctgaattttcttcaagttgagaaggtcaaaataaatc
tatgtaaatcaaaactaccacatccccccccccaaggtgctaggattgtc
attcttaaaggttcctctatgtggatcagtacatgggccttctcttttaa
tatctgtggaggacctactgtccttcaattattacactcaatattcgtct
ttcaagtgctcctgaaactttcacactcactctgactgtgtgagcacatg
tcacactctatccctcccagccattttgtagtgcactaaatgctaaacat
acgttttgctaatgacatttgctatcaatagacaagagacttatttgtgt
aagataaggagttaaattattaatatatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_56501049_56502093
seq2: B6Ng01-130C23.b_46_1084 (reverse)

seq1  TTAAGGAACCCTGAAATGCATAAGAGGTGAAAGAGTAGAAATAAAGATTA  50
      |||||||||| || ||||||||||| | ||||| || ||||| |||||||
seq2  TTAAGGAACCTTG-AATGCATAAGA-GCGAAAGGGTGGAAAT-AAGATTA  47

seq1  TCAGCTAGGCCTTTCTGCTCAAAACTGTCCGGTTACCTGACAAGCCAAAT  100
      |||||||||||||||||||| |||||||||||||| |||||||||| |||
seq2  TCAGCTAGGCCTTTCTGCTC-AAACTGTCCGGTTA-CTGACAAGCC-AAT  94

seq1  GCTGCACCTCTTCCGAACAGAACCAGTGAGCCTGGCTCACCACTTCCGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACCTCTTCCGAACAGAACCAGTGAGCCTGGCTCACCACTTCCGCA  144

seq1  TATGAGGGGCCAGTGGGGACTGCTGTGGGGCCCAGATGTCTGCTGCACTG  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGGCCAGTGGGGACTGCTGTGGGGCCCAGATGTCTGCTGCACTG  194

seq1  CTGTGTCACCAGTATGCCCACTAACAAGCCCCGCCACCTAACCCAGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCACCAGTATGCCCACTAACAAGCCCCGCCACCTAACCCAGTGTG  244

seq1  TTTTTACTAAGTCTCAGCCCCTCTCCACACCCCTTTTTCTTCTCTCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTAAGTCTCAGCCCCTCTCCACACCCCTTTTTCTTCTCTCTCCC  294

seq1  TTTTATTTTTTTCTGAATCCTTTTATTTTGTGTTAATAGAAATTCCTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTTTCTGAATCCTTTTATTTTGTGTTAATAGAAATTCCTATT  344

seq1  TGGGGTAGCTTAATGTATTTCGGAATGTCATCAGATTGTGAGACTGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTAGCTTAATGTATTTCGGAATGTCATCAGATTGTGAGACTGCTTC  394

seq1  CTTGAAACATTTTTGTGCTATTGTTTTAAAAAATAATAATTAAAAAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAACATTTTTGTGCTATTGTTTTAAAAAATAATAATTAAAAAACAG  444

seq1  TTGGCTTTAATAAAAAATGTCAATGCAAAAAAAAAAAAAACCCAAAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTAATAAAAAATGTCAATGCAAAAAAAAAAAAAACCCAAAGTAA  494

seq1  ATTACAGTGCACCAACCTATACATAAAGCTAAAAGCTGAAATACAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTGCACCAACCTATACATAAAGCTAAAAGCTGAAATACAAAGAG  544

seq1  AAATTAAAAAAAAAATGTACAACAGAAATCTCTAATAAGCAAGTAATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAAAAAAATGTACAACAGAAATCTCTAATAAGCAAGTAATTTC  594

seq1  CATGAGCTCAAACAGCCAACATGGTAGATAGAGAATTATATAGATCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCTCAAACAGCCAACATGGTAGATAGAGAATTATATAGATCATGG  644

seq1  TGCTATATAACCACTACTCTGTGCTCTGTGTAATTAATCTAGATTAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATATAACCACTACTCTGTGCTCTGTGTAATTAATCTAGATTAGAAT  694

seq1  ATGTTTACACTAGAAGTTAAATCATAATGTCTTTAAATGAAAAAATAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACACTAGAAGTTAAATCATAATGTCTTTAAATGAAAAAATAAAT  744

seq1  AAAAATTTTACTAGCACTAGAATGTTTAGAAAGAAAATATTTAGAGTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTACTAGCACTAGAATGTTTAGAAAGAAAATATTTAGAGTTAA  794

seq1  AGAAACTAGAAAGTTGTAAGCTCTTGCTCTTTAGGGGTATATGAACTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTAGAAAGTTGTAAGCTCTTGCTCTTTAGGGGTATATGAACTTTT  844

seq1  ATTGGCATATATTCTTTATACACAGTGTTGACTTTTACAAAGTTAATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCATATATTCTTTATACACAGTGTTGACTTTTACAAAGTTAATTTC  894

seq1  TTCCACCACATCATATATTTGATCCTCTCCATCAGTCCTCACCTTCCTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCACATCATATATTTGATCCTCTCCATCAGTCCTCACCTTCCTCC  944

seq1  CTTTTCTTGCTTTCATTCCTGTAGCATCACACACAGTAGCATAAGAAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTGCTTTCATTCCTGTAGCATCACACACAGTAGCATAAGAAAAG  994

seq1  ACTTTCTTAGACATGAACAGAACTGGCATCTGTATGAATGAATTC  1045
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTAGACATGAACAGAACTGGCATCTGTATGAATGAATTC  1039

seq1: chr6_56360754_56361791
seq2: B6Ng01-130C23.g_67_1096

seq1  GAATTCTCTTCAGTCCTATGACCTGTGTGTCTTCAGCAACAGTCTTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCAGTCCTATGACCTGTGTGTCTTCAGCAACAGTCTTGACA  50

seq1  TCAAGTAGGCAACCATGAGCAACTGCAATAGTTTGTATTTGAGAGTAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAGGCAACCATGAGCAACTGCAATAGTTTGTATTTGAGAGTAGGG  100

seq1  GATCTCTAGGACACCCCAGATTGAAAAACAAGAATTCTGAGTCAAAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTAGGACACCCCAGATTGAAAAACAAGAATTCTGAGTCAAAGGGT  150

seq1  CTGGCTAGGAGTTACGATAGTTTGGTATTGCAGTCCTAGTGAAGACATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAGGAGTTACGATAGTTTGGTATTGCAGTCCTAGTGAAGACATGG  200

seq1  CTCAAAAGTACAATTTTGACTTCATGAATTTCTCTCTTGCTACTCAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGTACAATTTTGACTTCATGAATTTCTCTCTTGCTACTCAACTT  250

seq1  CAAAATAATCTCAACAGTCTTTTACTTTCCTAGCTCCCTTTTGCCCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATCTCAACAGTCTTTTACTTTCCTAGCTCCCTTTTGCCCCCCA  300

seq1  CCCAAAAAAAAAAAAAAAAAAAAAAAACTTCTCTGGTCCCTTAGCACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAAAAAAAAAAAAAAAAAAAAACTTCTCTGGTCCCTTAGCACCCT  350

seq1  CCAACAATCCGGCAAGCAGGAAATAGATTTCTTTATAACTCTTTCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAATCCGGCAAGCAGGAAATAGATTTCTTTATAACTCTTTCTTTTC  400

seq1  TCCATCTACTTCTGGTATAGGAGATAAGATAAAACTTAAATAGCATTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTACTTCTGGTATAGGAGATAAGATAAAACTTAAATAGCATTATC  450

seq1  ATGCACATTATCTTGAGGAAAAAAGGAGAAAAGCTATAACCCACAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATTATCTTGAGGAAAAAAGGAGAAAAGCTATAACCCACAAAATG  500

seq1  AAAGCTTCTCAGCCTTTAATACCTCCCACAGGGGAGGTAGTGACAATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCTCAGCCTTTAATACCTCCCACAGGGGAGGTAGTGACAATAAG  550

seq1  CATAAGGGCATCTCCTCAGCTGTCCTCCTTCAGCTCCCATTGTAATGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGGCATCTCCTCAGCTGTCCTCCTTCAGCTCCCATTGTAATGAGA  600

seq1  ATTATAATAAGTACACTATTGTTACTAGCTTTCATTGGACATTTATCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATAAGTACACTATTGTTACTAGCTTTCATTGGACATTTATCTAT  650

seq1  ATCTACCTATAGTCTGAATTTTCTTCAAGTTGAGAAGGTCAAAATAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCTATAGTCTGAATTTTCTTCAAGTTGAGAAGGTCAAAATAAATC  700

seq1  TATGTAAATCAAAACTACCACATCCCCCCCCCCAAGGTGCTAGGATTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAATCAAAACTACCACATCCCCCCCCCCAAGGTGCTAGGATTGTC  750

seq1  ATTCTTAAAGGTTCCTCTATGTGGATCAGTACATGGGCCTTCTCTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAAAGGTTCCTCTATGTGGATCAGTACATGGGCCTTCTCTTTTAA  800

seq1  TATCTGTGGAGGACCTACTGTCCTTCAATTATTACAACTCAATATTCGTC  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATCTGTGGAGGACCTACTGTCCTTCAATTATTAC-ACTCAATATTCGTC  849

seq1  TTTCAAGGTGCTCCTGAAACTTTCACACTCACTCTGACTGTGTGAGCACA  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAA-GTGCTCCTGAAACTTTCACACTCACTCTGACTGTGTGAGCACA  898

seq1  TGTCACACTCTATCCCTCCCCAGCACATTTGTTAGTGGCACTAAATGCTA  950
      ||||||||||||||||| |||||| |||||  |||| |||||||||||||
seq2  TGTCACACTCTATCCCT-CCCAGC-CATTTTGTAGT-GCACTAAATGCTA  945

seq1  AACATACGTTTTTTGCTAAATGAACAATTTTGCTATCCAAATAGACAAGA  1000
      ||||||||  ||||||| |||| |||  |||||||||  |||||||||||
seq2  AACATACG--TTTTGCT-AATG-ACA--TTTGCTATC--AATAGACAAGA  987

seq1  GACTTATTTGTGTTAAGATTTAGTAGT-------TTAATATATTA  1038
      |||||||||||| ||||| | || |||       |||||||||||
seq2  GACTTATTTGTG-TAAGA-TAAGGAGTTAAATTATTAATATATTA  1030