BAC Information

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BAC

Clone NameB6Ng01-130I18
Chromosome6 (Build37)
Map Location 6,611,892 - 6,746,352
singlet/doubletdoublet
Overlap geneLOC545826
Upstream geneDync1i1, Slc25a13, EG667462, EG667468, LOC667471, LOC100040096, Shfm1
Downstream geneDlx6as, Dlx5, Acn9, EG667500, Tac1, LOC667511, Asns
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130I18.bB6Ng01-130I18.g
ACCDH931832DH931833
length1,2071,120
definitionDH931832|Mus musculus domesticus DNA, BAC clone: B6Ng01-130I18, 5' end.DH931833|Mus musculus domesticus DNA, BAC clone: B6Ng01-130I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,611,892 - 6,613,104)(6,745,204 - 6,746,352)
sequence
gaattcattatggtattaattcattgccatttatactcatttgtgtcatt
atttgattgctatactattctaatggttcctcctagaaagcagaaatttt
gatttgggttttttcccccctagtttttctttattctgtaaacatttgga
ttatttccattgaatgaaggaactctttgaattcaaagacatttccttaa
aaattttaagaaatattcatgcattttcatagagaaaaactgcagtagca
aattaaaaacaggctgtcaacaacagaacagataaataactcgtgtacca
ttcataaaacacaatgtgtgctgcagttaaaatgaatgaattagtaccat
atgtgtccatgtggctacattttcaaagcatatacatgaagaaagggttc
ataaaaaaatatatgttgttttattttgctgcacatccatggaagaggtt
acaaacaagaacaattggcagcacaaacaaatatgattaaatatctttcc
ctctattccatgtcactctccagacaggttcaggagtcatgcatggaagg
tctactcttaagccccatccccactacagctccacatctctatttccttt
ctgagaatgtccttaagtgcctttgtgaacaattgtatagaccaaggata
aagttgggagagatataagtagaaaaagaagctctagagagttatacatg
taaaagaagaaaatcagtactgtacaaaaatactgaacttagtttgtcta
ttaaaatattcgatgtaattacattttaactggtggaacaaaccaacaca
tctaacaagatttggaagatcccagggccctcaaagaaaataaaattaaa
ataatgctgctgctgctgctgctgctgctgctgctgctgataggaatctt
tcttcagtcttcaaatctagacaagaaacatcggagcttgaagtttctaa
tgaattatagctttaatcatagtgtgagcttccttctgtgtttgggggac
tgcagcatcttccctaaatattttcctactttgcttcagtgctatataac
tttggtcaataacctggaagaactctcttaaacttacagcttaaagttgc
agaaatggctttgttatgcagggtatatgaaggactcgaagcttgtgaaa
cctaagtccacctttctaggtctagccacgtgagccgtgaacgcctggcc
aacctgc

gaattctacataaatgagctgtaacaaatggaaataatttcataatctca
agcttctgaaagcatttctcttaaatgcttattgtaacagcggggtagtt
agagggtcctatgtggttagcatttgctcccttggaaacccgagacataa
agtagtcctgtgtgcttcatgttctgttgcagaggaaagagcagtgatag
ctcctcgatttccaagtccacagaaaagcagcagcatccccgggcagtga
ttttggtgtctgaagcaagtttagataaactggcagctatcacagctctt
ggaagaattataacgagcatctataacgtcttgtttaaaattttgtggcc
attatttcaatcttgtggaaagcccgactttcattagagaaagcgcattg
ctctttctagaaaagctttggaagttatggcgattgcttgaagactcccc
tgcgtatgtcagacatccactcaccaggaacaagtcatacaaaatgtgca
gattttaattattgttttaagaaaattaagtgttgcttttctaggacatc
atatttatgaatctaattttattgcactaatgcacaattacatgtaaagt
gatggctacaacatgccttctacaaccatttataaacacagtctcacttc
tgctcttacccaaagatagagaagtattcatctgtactgtcatgctgtct
aggttctaagacattcaaaaattttaaaactggttttgtttagttgaaga
tgtgagcaaccaaatgcgtacctttctgtaacaatggttaaattttacat
taaacttgttaattttgataaattatttcctatgacaaattaggtcattt
tgggtcctcaataattgtatatttttcatctcgatagagctaggcatgaa
ttaattcatacaatcatcggtgtatcagtttggtcacttatactttcaac
acattgtgtatatggacatcatacgttatcaggaaatgtatatgccacaa
agctatgattgaaatctacaactcgctaatgaaagtagttaagagtatac
tgccactgcatatgggcaggttgaacatatgaccctaatttaaatgattg
ggaagagactccgggagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_6611892_6613104
seq2: B6Ng01-130I18.b_43_1249

seq1  GAATTCATTATGGTATTAATTCATTGCCATTTATACTCATTTGTGTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGGTATTAATTCATTGCCATTTATACTCATTTGTGTCATT  50

seq1  ATTTGATTGCTATACTATTCTAATGGTTCCTCCTAGAAAGCAGAAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTGCTATACTATTCTAATGGTTCCTCCTAGAAAGCAGAAATTTT  100

seq1  GATTTGGGTTTTTTCCCCCCTAGTTTTTCTTTATTCTGTAAACATTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGGTTTTTTCCCCCCTAGTTTTTCTTTATTCTGTAAACATTTGGA  150

seq1  TTATTTCCATTGAATGAAGGAACTCTTTGAATTCAAAGACATTTCCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCATTGAATGAAGGAACTCTTTGAATTCAAAGACATTTCCTTAA  200

seq1  AAATTTTAAGAAATATTCATGCATTTTCATAGAGAAAAACTGCAGTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAAGAAATATTCATGCATTTTCATAGAGAAAAACTGCAGTAGCA  250

seq1  AATTAAAAACAGGCTGTCAACAACAGAACAGATAAATAACTCGTGTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAACAGGCTGTCAACAACAGAACAGATAAATAACTCGTGTACCA  300

seq1  TTCATAAAACACAATGTGTGCTGCAGTTAAAATGAATGAATTAGTACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAACACAATGTGTGCTGCAGTTAAAATGAATGAATTAGTACCAT  350

seq1  ATGTGTCCATGTGGCTACATTTTCAAAGCATATACATGAAGAAAGGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCATGTGGCTACATTTTCAAAGCATATACATGAAGAAAGGGTTC  400

seq1  ATAAAAAAATATATGTTGTTTTATTTTGCTGCACATCCATGGAAGAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAATATATGTTGTTTTATTTTGCTGCACATCCATGGAAGAGGTT  450

seq1  ACAAACAAGAACAATTGGCAGCACAAACAAATATGATTAAATATCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAGAACAATTGGCAGCACAAACAAATATGATTAAATATCTTTCC  500

seq1  CTCTATTCCATGTCACTCTCCAGACAGGTTCAGGAGTCATGCATGGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTCCATGTCACTCTCCAGACAGGTTCAGGAGTCATGCATGGAAGG  550

seq1  TCTACTCTTAAGCCCCATCCCCACTACAGCTCCACATCTCTATTTCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCTTAAGCCCCATCCCCACTACAGCTCCACATCTCTATTTCCTTT  600

seq1  CTGAGAATGTCCTTAAGTGCCTTTGTGAACAATTGTATAGACCAAGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATGTCCTTAAGTGCCTTTGTGAACAATTGTATAGACCAAGGATA  650

seq1  AAGTTGGGAGAGATATAAGTAGAAAAAGAAGCTCTAGAGAGTTATACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGGAGAGATATAAGTAGAAAAAGAAGCTCTAGAGAGTTATACATG  700

seq1  T-AAAGAAGAAAATCAGTACTGTACAAAAATACTGAACTTAGTTTGTCTA  749
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAGAAAATCAGTACTGTACAAAAATACTGAACTTAGTTTGTCTA  750

seq1  TTAAAATATTCGATGTAATTACATTTTAACTGGTGGAACAAACCAACACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATTCGATGTAATTACATTTTAACTGGTGGAACAAACCAACACA  800

seq1  TCTAACAAGATTTGGAAGATCCCAGGGCCCTCAAAGAAAACTAAAATTAA  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTAACAAGATTTGGAAGATCCCAGGGCCCTCAAAGAAAA-TAAAATTAA  849

seq1  AATAATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATAGGAATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATAGGAATCT  899

seq1  TTCTTCAGTCTTCAAATCTAGACAAGAAACCATCGGAGCTTGAAGTTTCT  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCTTCAGTCTTCAAATCTAGACAAGAAA-CATCGGAGCTTGAAGTTTCT  948

seq1  AATGCATTATAGCTTTATTCATAGTGTGAGC-TCCCTCTGTGTTTTGGGG  998
      |||| |||||||||||| ||||||||||||| ||| |||||| |||||||
seq2  AATGAATTATAGCTTTAATCATAGTGTGAGCTTCCTTCTGTG-TTTGGGG  997

seq1  GACTGCAGCATCTTCCCCTAAATATTTTCCTTACTTTGCTACAGTGCTAA  1048
      |||||||||||||| ||||||||||||||| ||||||||| ||||||| |
seq2  GACTGCAGCATCTT-CCCTAAATATTTTCC-TACTTTGCTTCAGTGCT-A  1044

seq1  TATTAATTTTGGTTCAATACACTGAAAGA---CTCCTAAAACTACAGGCT  1095
      || ||| ||||| ||||||  ||| ||||   ||| ||||  |||| |||
seq2  TA-TAACTTTGG-TCAATAACCTGGAAGAACTCTCTTAAACTTACA-GCT  1091

seq1  TAGAGTGGCAGAGAT-GCTTTGTTATTGCAGGTTATATGAAGGACCCAAT  1144
      || ||| ||||| || ||||||||| |||||| |||||||||||| | | 
seq2  TAAAGTTGCAGAAATGGCTTTGTTA-TGCAGGGTATATGAAGGACTCGAA  1140

seq1  GCTTGAGACATC-AAGGCCA-CTTTCTAGGTTCATGCAGCTGAGCGCAGT  1192
      ||||| || | | ||| ||| ||||||||||  |  ||  |||  || ||
seq2  GCTTGTGAAACCTAAGTCCACCTTTCTAGGTCTAGCCACGTGA--GCCGT  1188

seq1  AGACCGCCTGGCCAACTCTGC  1213
       || |||||||||||| ||||
seq2  -GAACGCCTGGCCAAC-CTGC  1207


seq1: chr6_6745204_6746352
seq2: B6Ng01-130I18.g_66_1185 (reverse)

seq1  GCACATCCCTGAGTCTCTTTCCAAATCATTTAAATATTAGGGTCAATAAT  50
      |||| |||| ||||||| |||| ||||||||||  ||||||||| |||  
seq2  GCAC-TCCCGGAGTCTC-TTCCCAATCATTTAA--ATTAGGGTC-ATA--  43

seq1  TGTTCAACCTGCCCATATTGCAGTTGGCAGTATAACTCTATAAACTTACT  100
      ||||||||||||||||| ||||| ||||||||||   || | ||| ||| 
seq2  TGTTCAACCTGCCCATA-TGCAG-TGGCAGTATA---CTCTTAAC-TAC-  86

seq1  TTTTAAATAGCGAGTTGTAGATTTACAATCATAGCTTTTGTGGCATATAC  150
       ||| | ||||||||||||||||| |||||||||| ||||||||||||||
seq2  -TTTCATTAGCGAGTTGTAGATTT-CAATCATAGC-TTTGTGGCATATAC  133

seq1  ATATTTCCTGATAAACGTTATTGATGTCAATAATACACAATGTTGTTTGA  200
        |||||||||| |||||   ||||||| || |||||||||||   ||||
seq2  --ATTTCCTGAT-AACGT--ATGATGTCCAT-ATACACAATGT--GTTGA  175

seq1  AAGTATAAGTGACCAAACTGATACACCGATGATTTGTATGAATTAATTTC  250
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  AAGTATAAGTGACCAAACTGATACACCGATGA-TTGTATGAATTAA-TTC  223

seq1  ATGCCTAGCTCTATTGGAGATGAAAAATATACAATTATTGAGGACCCAAA  300
      ||||||||||||| | ||||||||||||||||||||||||||||||||||
seq2  ATGCCTAGCTCTA-TCGAGATGAAAAATATACAATTATTGAGGACCCAAA  272

seq1  ATGACCTAATTTGTCATAGGAAATAATTTATCAAAATTTAACAAGTTTAA  350
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGACCTAATTTGTCATAGGAAATAATTTATCAAAA-TTAACAAGTTTAA  321

seq1  TGTAAAATTTAACCATTGTTACAGAAAGGTACGCATTTGGTTGCTCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATTTAACCATTGTTACAGAAAGGTACGCATTTGGTTGCTCACAT  371

seq1  CTTCAACTAAACAAAACCAGTTTTAAAATTTTTGAATGTCTTAGAACCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTAAACAAAACCAGTTTTAAAATTTTTGAATGTCTTAGAACCTA  421

seq1  GACAGCATGACAGTACAGATGAATACTTCTCTATCTTTGGGTAAGAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCATGACAGTACAGATGAATACTTCTCTATCTTTGGGTAAGAGCAG  471

seq1  AAGTGAGACTGTGTTTATAAATGGTTGTAGAAGGCATGTTGTAGCCATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGACTGTGTTTATAAATGGTTGTAGAAGGCATGTTGTAGCCATCA  521

seq1  CTTTACATGTAATTGTGCATTAGTGCAATAAAATTAGATTCATAAATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATGTAATTGTGCATTAGTGCAATAAAATTAGATTCATAAATATG  571

seq1  ATGTCCTAGAAAAGCAACACTTAATTTTCTTAAAACAATAATTAAAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTAGAAAAGCAACACTTAATTTTCTTAAAACAATAATTAAAATCT  621

seq1  GCACATTTTGTATGACTTGTTCCTGGTGAGTGGATGTCTGACATACGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTTTGTATGACTTGTTCCTGGTGAGTGGATGTCTGACATACGCAG  671

seq1  GGGAGTCTTCAAGCAATCGCCATAACTTCCAAAGCTTTTCTAGAAAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCTTCAAGCAATCGCCATAACTTCCAAAGCTTTTCTAGAAAGAGC  721

seq1  AATGCGCTTTCTCTAATGAAAGTCGGGCTTTCCACAAGATTGAAATAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGCTTTCTCTAATGAAAGTCGGGCTTTCCACAAGATTGAAATAATG  771

seq1  GCCACAAAATTTTAAACAAGACGTTATAGATGCTCGTTATAATTCTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAAAATTTTAAACAAGACGTTATAGATGCTCGTTATAATTCTTCCA  821

seq1  AGAGCTGTGATAGCTGCCAGTTTATCTAAACTTGCTTCAGACACCAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTGATAGCTGCCAGTTTATCTAAACTTGCTTCAGACACCAAAAT  871

seq1  CACTGCCCGGGGATGCTGCTGCTTTTCTGTGGACTTGGAAATCGAGGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCGGGGATGCTGCTGCTTTTCTGTGGACTTGGAAATCGAGGAGC  921

seq1  TATCACTGCTCTTTCCTCTGCAACAGAACATGAAGCACACAGGACTACTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTGCTCTTTCCTCTGCAACAGAACATGAAGCACACAGGACTACTT  971

seq1  TATGTCTCGGGTTTCCAAGGGAGCAAATGCTAACCACATAGGACCCTCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTCGGGTTTCCAAGGGAGCAAATGCTAACCACATAGGACCCTCTA  1021

seq1  ACTACCCCGCTGTTACAATAAGCATTTAAGAGAAATGCTTTCAGAAGCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCCGCTGTTACAATAAGCATTTAAGAGAAATGCTTTCAGAAGCTT  1071

seq1  GAGATTATGAAATTATTTCCATTTGTTACAGCTCATTTATGTAGAATTC  1149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTATGAAATTATTTCCATTTGTTACAGCTCATTTATGTAGAATTC  1120


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