BAC Information

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BAC

Clone NameB6Ng01-130L22
Chromosome6 (Build37)
Map Location 27,155,842 - 27,261,093
singlet/doubletdoublet
Overlap geneLOC100041247, Grm8
Upstream geneLOC100041210
Downstream gene6530409C15Rik, AA407452, LOC100041304
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130L22.bB6Ng01-130L22.g
ACCDH931980DH931981
length1,2281,128
definitionDH931980|Mus musculus domesticus DNA, BAC clone: B6Ng01-130L22, 5' end.DH931981|Mus musculus domesticus DNA, BAC clone: B6Ng01-130L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,155,842 - 27,157,071)(27,259,973 - 27,261,093)
sequence
gaattcatttaccctcaaaagtacaattaaacgaaattactagatacctt
aatggaaaccctaagaagttagtagtcttactgacattcaagaatattga
ggagggaaacatgatatcattctccatgtgttcagtaagaataatttaac
aacatggaagaccaagtcatacagcaatacaaggcagagatcagggtcta
tagcaagcttcatttgggcattgacaagggggtgtattaagggactggct
tcacagatgcaaggagcaaagtaaagtctgagacactgttaagatagttt
tgtaaattatggctattgagataacatgggcaaaataatgatgtttacca
atcaatattttgcaggaatggtaggaactatttctggaagagagatttca
ggaatgaatttctagataatcgttttgactcaaagcatattcagtttgag
atcaaatcggtcatcaatttgtagatattcaccaagtggttaaggagtgt
agtgattaattctggatgtcatgttcactaaaatgaggaatactcagaat
cttgctaaagtatttatctgggtgtatcagtaagggtggttccatgggta
gctaccatacagatcagtgtactgaggcaggtaccccaaatgaaagtgga
gccaattaaaataagcagaaaacctgctagcccaaatagaaacagaagga
aaaaataatcattgctctaatatccgttcttatttgttgttgttgctgtt
gctgctgctgcattttggtttttgtagttgttttgtcactgtgttcatta
gggtttccatttctgtcaagagacaccataaccaaggcaacttttataaa
agacaacatttaattatggctggcttatgattatcatcatggttagagta
tggcagtaccctggcaggcacagtgctggagttgctgaaaattctacatc
ttgttctgaagtgaacgtgagaagactgtcttacaagcagctaggaggat
gctctcaacctccccaacccatcacaacacacacacacacacacacacac
acacacacacaccaaggagtgagaccacttcctccaataagtccattcct
tctcaatggggtcaagcctatatcaaacccccaacattccctctttcaca
tggttgttgctggttggttgttgatgtgttgtgcctgttgttgccattgc
gcgtagccagttgaacctagagcctcac
gaattcctctaattgtttgaaatattctttcaaagattaatatatatagg
agggatttaagcttatttctaattgttgatggaagtaccattaccaaaga
gataatctggtctaagttagagttgaatagttcagtgatttttcatatcc
tgattgatatgaattatctttgtggctttcaacatataacccaactgctt
atcaaaataaaactatctttaattcttaaagtagaaacctaacaggaatg
ttccagagttagagatttcttgaagtcgttaatatatcatgcaggctcca
taaaaagtgatagctgcctgagtttgagtctcactgaaagcagaagcctg
aggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtgaacccaaggtac
taagaaggaaatactggaagcaagtgggtggggggagcaatgaggtgcag
caggaaacaggaacatcagtatagtgcatattcaatcagatgtcagcctc
tctaggcttcctctacctatctgtgtgagtcacaaaagaccagagctttt
agccacagcacagttacttctctgtaggtttttatttttccttttttttt
tttttttaaagaaattggtcacatgcatagatagaaccaacttatgatgc
agatggaggtttgactaccaaatgtttctaaggctgatctttctactgtg
gtgatttcatgaggaaataatgagttaagcatcatgttgcttacttaaaa
gaatcctgggaagagagtgtctttagcaaggacttggcttgaagcaatga
tgatgggcacatgggggaacttggatgtctaagagggagaggaattaacc
aggacccagtgcattggtttaaagttcttttgtagagtttttgtacatcc
tgagacaataagatatagatttaaatattgaaaaggatgtctgcataaga
ttggccttaggcagtccatcatcatcaatcatccaccaaagaagtgagat
acctactatggtgccattttgtagatgggggaaacagaaacccacctgtt
caaagatttaaagttaaggtggatgcattgccttgcaatcctggtctatt
taaaaaccagggaactctccaatgcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_27155842_27157071
seq2: B6Ng01-130L22.b_46_1273

seq1  GAATTCATTTACCCTCAAAAGTACAATTAAACGAAATTACTAGATACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTACCCTCAAAAGTACAATTAAACGAAATTACTAGATACCTT  50

seq1  AATGGAAACCCTAAGAAGTTAGTAGTCTTACTGACATTCAAGAATATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAACCCTAAGAAGTTAGTAGTCTTACTGACATTCAAGAATATTGA  100

seq1  GGAGGGAAACATGATATCATTCTCCATGTGTTCAGTAAGAATAATTTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAACATGATATCATTCTCCATGTGTTCAGTAAGAATAATTTAAC  150

seq1  AACATGGAAGACCAAGTCATACAGCAATACAAGGCAGAGATCAGGGTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGAAGACCAAGTCATACAGCAATACAAGGCAGAGATCAGGGTCTA  200

seq1  TAGCAAGCTTCATTTGGGCATTGACAAGGGGGTGTATTAAGGGACTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGCTTCATTTGGGCATTGACAAGGGGGTGTATTAAGGGACTGGCT  250

seq1  TCACAGATGCAAGGAGCAAAGTAAAGTCTGAGACACTGTTAAGATAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATGCAAGGAGCAAAGTAAAGTCTGAGACACTGTTAAGATAGTTT  300

seq1  TGTAAATTATGGCTATTGAGATAACATGGGCAAAATAATGATGTTTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTATGGCTATTGAGATAACATGGGCAAAATAATGATGTTTACCA  350

seq1  ATCAATATTTTGCAGGAATGGTAGGAACTATTTCTGGAAGAGAGATTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATTTTGCAGGAATGGTAGGAACTATTTCTGGAAGAGAGATTTCA  400

seq1  GGAATGAATTTCTAGATAATCGTTTTGACTCAAAGCATATTCAGTTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAATTTCTAGATAATCGTTTTGACTCAAAGCATATTCAGTTTGAG  450

seq1  ATCAAATCGGTCATCAATTTGTAGATATTCACCAAGTGGTTAAGGAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCGGTCATCAATTTGTAGATATTCACCAAGTGGTTAAGGAGTGT  500

seq1  AGTGATTAATTCTGGATGTCATGTTCACTAAAATGAGGAATACTCAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTAATTCTGGATGTCATGTTCACTAAAATGAGGAATACTCAGAAT  550

seq1  CTTGCTAAAGTATTTATCTGGGTGTATCAGTAAGGGTGGTTCCATGGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTAAAGTATTTATCTGGGTGTATCAGTAAGGGTGGTTCCATGGGTA  600

seq1  GCTACCATACAGATCAGTGTACTGAGGCAGGTACCCCAAATGAAAGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCATACAGATCAGTGTACTGAGGCAGGTACCCCAAATGAAAGTGGA  650

seq1  GCCAATTAAAATAAGCAGAAAACCTGCTAGCCCAAATAGAAACAGAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTAAAATAAGCAGAAAACCTGCTAGCCCAAATAGAAACAGAAGGA  700

seq1  AAAAATAATCATTGCTCTAATATCCGTTCTTATTTGTTGTTGTTGCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATCATTGCTCTAATATCCGTTCTTATTTGTTGTTGTTGCTGTT  750

seq1  GCTGCTGCTGCATTTTGGTTTTTGTAGTTGTTTTGTCACTGTGTTCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTGCATTTTGGTTTTTGTAGTTGTTTTGTCACTGTGTTCATTA  800

seq1  GGGTTTCCATTTCTGTCAAGAGACACCATAACCAAGGCAACTTTTATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCCATTTCTGTCAAGAGACACCATAACCAAGGCAACTTTTATAAA  850

seq1  AGACAACATTTAATTATGGCTGGCTTATGATTATCATCATGGTTAGAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACATTTAATTATGGCTGGCTTATGATTATCATCATGGTTAGAGTA  900

seq1  TGGCAGTACCCTGGCAGGCACAGTGCTGGAGTTGCTGAAAATTCTACATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTACCCTGGCAGGCACAGTGCTGGAGTTGCTGAAAATTCTACATC  950

seq1  TTGTTCTGAAGGTGAACGTGAGAAGACTGTCTTACAAGCAGCTAGGAGGA  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGAA-GTGAACGTGAGAAGACTGTCTTACAAGCAGCTAGGAGGA  999

seq1  TGCTCTCAACCTCCCCCAACCCCATCACACACACACACACACACACACAC  1050
      ||||||||||||||||  | ||||||||| ||||||||||||||||||||
seq2  TGCTCTCAACCTCCCC--AACCCATCACA-ACACACACACACACACACAC  1046

seq1  ACACACACACACACACACACAGAGTGAGA-CACTTCCTCCAATAAGTCCA  1099
      |||||||||||||||| ||  |||||||| ||||||||||||||||||||
seq2  ACACACACACACACAC-CAAGGAGTGAGACCACTTCCTCCAATAAGTCCA  1095

seq1  TACC-TCTCAAT-GGGTCAAGCTTAT-TCAAACCACC-ACATTCCCTCTT  1145
      | || ||||||| ||||||||| ||| ||||||| || ||||||||||||
seq2  TTCCTTCTCAATGGGGTCAAGCCTATATCAAACCCCCAACATTCCCTCTT  1145

seq1  TTTCACTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTG-GTCTGT  1194
      |  ||     || |||||    || ||| |||||  | ||||| | ||| 
seq2  TCACA-----TGGTTGTT--GCTGGTTGGTTGTTGATGTGTTGTGCCTG-  1187

seq1  TTGTTTGCAATGC----TGCAAGTTGAACCTAGAG-CTCAC  1230
      |||||  || |||     || |||||||||||||| |||||
seq2  TTGTTGCCATTGCGCGTAGCCAGTTGAACCTAGAGCCTCAC  1228

seq1: chr6_27259973_27261093
seq2: B6Ng01-130L22.g_69_1196 (reverse)

seq1  CATGCATTGGAG---CTCCTGGTTCTTAATTAGACCCAGGATT-TACAGC  46
      ||||||||||||     ||||||| |||| |||| ||||||||  |  ||
seq2  CATGCATTGGAGAGTTCCCTGGTTTTTAAATAGA-CCAGGATTGCAAGGC  49

seq1  AATGCATCACCCTTACCTCTAATTCTTTG-ACA-GTGGGTTTCTGTTT-C  93
      ||||||||  ||||| || ||| |||||| ||| |||||||||||||| |
seq2  AATGCATCCACCTTAACTTTAAATCTTTGAACAGGTGGGTTTCTGTTTCC  99

seq1  CCCATCTTACAGATGGCA-CATAGTAGGTAT-TCTACTCTTTGTTGATTG  141
      |||||||   | |||||| |||||||||||| ||   |||||| ||  ||
seq2  CCCATCTACAAAATGGCACCATAGTAGGTATCTCACTTCTTTGGTGGATG  149

seq1  ATTGATGATTGATTGACTGCCTAAGCCAATTCTTATGCAGACATCCTTTT  191
      |||||||| |||| ||||||||||| | | ||||||||||||||||||||
seq2  ATTGATGA-TGATGGACTGCCTAAGGCCAATCTTATGCAGACATCCTTTT  198

seq1  C-ATATTTAAATCTATATCTTATTGTCTCAGGATGTACAAATAACTCTTA  240
      | ||||||||||||||||||||||||||||||||||||||| ||||||  
seq2  CAATATTTAAATCTATATCTTATTGTCTCAGGATGTACAAA-AACTCTAC  247

seq1  CAAAGAACTTT-AACCAATGCACTGTGTCCTGGTTAATTCCTCTCCCTCC  289
       |||||||||| ||||||||||||| |||||||||||||||||||||| |
seq2  AAAAGAACTTTAAACCAATGCACTGGGTCCTGGTTAATTCCTCTCCCT-C  296

seq1  TTAGACATCCAAGTTCCCCCATGTGCCCATCATCATTGCTTCAAGCCAAG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACATCCAAGTTCCCCCATGTGCCCATCATCATTGCTTCAAGCCAAG  346

seq1  TCCTTGCTAAAGACACTCTCTTCCCAGGATTCTTTTAAGTAAGCAACATG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTAAAGACACTCTCTTCCCAGGATTCTTTTAAGTAAGCAACATG  396

seq1  ATGCTTAACTCATTATTTCCTCATGAAATCACCACAGTAGAAAGATCAGC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAACTCATTATTTCCTCATGAAATCACCACAGTAGAAAGATCAGC  446

seq1  CTTAGAAACATTTGGTAGTCAAACCTCCATCTGCATCATAAGTTGGTTCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAACATTTGGTAGTCAAACCTCCATCTGCATCATAAGTTGGTTCT  496

seq1  ATCTATGCATGTGACCAATTTCTTTAAAAAAAAAAAAAAAAGGAAAAATA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGCATGTGACCAATTTCTTTAAAAAAAAAAAAAAAAGGAAAAATA  546

seq1  AAAACCTACAGAGAAGTAACTGTGCTGTGGCTAAAAGCTCTGGTCTTTTG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTACAGAGAAGTAACTGTGCTGTGGCTAAAAGCTCTGGTCTTTTG  596

seq1  TGACTCACACAGATAGGTAGAGGAAGCCTAGAGAGGCTGACATCTGATTG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCACACAGATAGGTAGAGGAAGCCTAGAGAGGCTGACATCTGATTG  646

seq1  AATATGCACTATACTGATGTTCCTGTTTCCTGCTGCACCTCATTGCTCCC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCACTATACTGATGTTCCTGTTTCCTGCTGCACCTCATTGCTCCC  696

seq1  CCCACCCACTTGCTTCCAGTATTTCCTTCTTAGTACCTTGGGTTCACTTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACTTGCTTCCAGTATTTCCTTCTTAGTACCTTGGGTTCACTTT  746

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAGGCTTCTGCTTTCAGT  789
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCTCAGGCTTCTGCTTTCAGT  796

seq1  GAGACTCAAACTCAGGCAGCTATCACTTTTTATGGAGCCTGCATGATATA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCAAACTCAGGCAGCTATCACTTTTTATGGAGCCTGCATGATATA  846

seq1  TTAACGACTTCAAGAAATCTCTAACTCTGGAACATTCCTGTTAGGTTTCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACGACTTCAAGAAATCTCTAACTCTGGAACATTCCTGTTAGGTTTCT  896

seq1  ACTTTAAGAATTAAAGATAGTTTTATTTTGATAAGCAGTTGGGTTATATG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAGAATTAAAGATAGTTTTATTTTGATAAGCAGTTGGGTTATATG  946

seq1  TTGAAAGCCACAAAGATAATTCATATCAATCAGGATATGAAAAATCACTG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCCACAAAGATAATTCATATCAATCAGGATATGAAAAATCACTG  996

seq1  AACTATTCAACTCTAACTTAGACCAGATTATCTCTTTGGTAATGGTACTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCAACTCTAACTTAGACCAGATTATCTCTTTGGTAATGGTACTT  1046

seq1  CCATCAACAATTAGAAATAAGCTTAAATCCCTCCTATATATATTAATCTT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAACAATTAGAAATAAGCTTAAATCCCTCCTATATATATTAATCTT  1096

seq1  TGAAAGAATATTTCAAACAATTAGAGGAATTC  1121
      ||||||||||||||||||||||||||||||||
seq2  TGAAAGAATATTTCAAACAATTAGAGGAATTC  1128