BAC Information

Click to search

BAC

Clone NameB6Ng01-130O12
Chromosome6 (Build37)17 (Build37)
Map Location 18,835,427 - 18,835,96842,024,001 - 42,025,054
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130O12.bB6Ng01-130O12.g
ACCDH932100DH932101
length9851,040
definitionDH932100|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O12, 5' end.DH932101|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,427 - 18,835,968)(42,024,001 - 42,025,054)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtctc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgatgccc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagacg
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatctttttaaatttctttcttcagagatttgaagttttatcatac
agatcttcacttccttacttagagtcacgccgagatatttatatatttgt
gactatgagaaggtgtgtttcctaatttctatctc
gaattccaaaaaaacccacaagaggtgaatatataaaagaaattaggcac
acacagaagctataatggtaatgaatcaacagattctttagggcatgagg
gggaagaaagaagaagcaaaagagggcatgtggtctcctactatttccaa
aatgttttgagaatttagcagatactgcatgttctcagccatctgctaca
ttttcataaacataaacatacccattaataggtctccgtgggattttaaa
acttaatctcctagagtctaaaatcccacgtatcaggtttgtgctgctat
gttaacttgttctctagctttcagcttttaggtttttaaattcttatttt
actgtaaatattctgcttgctgtgttataagcatttttatttctggatat
gggagcaaaactgaaaaatgctaaccttttaaaaaacatatatggttttt
gtttttttgttttttcgaggcagggtttctctgtatagctctggctatcc
tggaactcactttgtagacctctactgtgtcttggcctaccaaagagaag
atggtgtaatacacagctgtgatatgcatagatgttcaaaatgtatataa
aaatagttgttttttccttttgggcaaagaatagctaccaggaaggggaa
gacaaataaaaaggtgccatgttgtgcttgcctgatatatgtagtagcaa
actgaaagcattattcctccttggtaattcaagatcagagaaaagaaaat
gtgtctaccatagaaacactgctttccttagagactattttggacatagt
ttcttcttaggaaaattgctgggcttcactattcaaaaggaaaattattt
tgatatattgtgggtgagtcaaattggctgcaacatggaaataggtttac
agagagaaggtttaagtacattcctgggaagctagaaagaaatttatcag
agtaagagcattgctaaaagcttgctgatgccctgaactggaacatgttt
gcaaaagaaattaatccagtggatgaggtatgaatacgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835427_18835968
seq2: B6Ng01-130O12.b_50_592 (reverse)

seq1  AATAGAATTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGAT  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGAT  50

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100

seq1  ACAATTGGTGCTGGCACAACTGGTTGTTATCTTGTAGAAGAATGTGAATC  150
      ||||||||||||||||||||||||||||||| |||||||||||| | |||
seq2  ACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGGGCATC  150

seq1  GATCCATACTTATCTCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200

seq1  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250

seq1  AAAGCCTTGAAGATATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCA  300
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  AAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCA  300

seq1  ATGGC-TGTGCTGTGAGGTAGAGAATCGACAAATGGGACCTAATGAAACT  349
      ||||| |||||||| || |  ||||| |||||||||||||||||||||||
seq2  ATGGCTTGTGCTGTAAGATCAAGAATTGACAAATGGGACCTAATGAAACT  350

seq1  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  400

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  449
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGAGACTA  450

seq1  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  500

seq1  TAACCCCATTAATAAATGGGGCTCAGAACTGAACAAAGAATTC  542
      |||||||||||| ||||||||||||||||||||||||||||||
seq2  TAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  543

seq1: chr17_42024001_42025054
seq2: B6Ng01-130O12.g_71_1110 (reverse)

seq1  TGCGCTATTCATACCTCACTCCAACTGGATTATATTACTTTTGCAAACAT  50
      |||| ||||||||||||| ||| ||||||||| ||| |||||||||||||
seq2  TGCG-TATTCATACCTCA-TCC-ACTGGATTA-ATTTCTTTTGCAAACAT  46

seq1  GTTTCCAGTTCAGGGCATTCAGCAAGCTTTTTAGCAAACTGCTCTTACTC  100
      | ||||||||||||||| ||||||||| |||||||||  |||||||||||
seq2  G-TTCCAGTTCAGGGCA-TCAGCAAGC-TTTTAGCAA--TGCTCTTACTC  91

seq1  TGATAAATTTCTTTCTTAGCTTTCCCAGGAATGTACTTAAAACCTTCTCT  150
      ||||||||||||||| |||| ||||||||||||||||| |||||||||||
seq2  TGATAAATTTCTTTC-TAGC-TTCCCAGGAATGTACTT-AAACCTTCTCT  138

seq1  CTGTAAACCTTATTTCCATGTTGCAGCCAATTTGACTCACCCACAATTAT  200
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  CTGTAAACC-TATTTCCATGTTGCAGCCAATTTGACTCACCCACAA-TAT  186

seq1  ATC-AAATAATTTTCCTTTTGAATAGTGAAGCCCAGCAATTTTCCTAAGA  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATAATTTTCCTTTTGAATAGTGAAGCCCAGCAATTTTCCTAAGA  236

seq1  AGAAACTATGTCCAAAATAGTCTCTAAGGAAAGCAGTGTTTCTATGGTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGAAACTATGTCCAAAATAGTCTCTAAGGAAAGCAGTGTTTCTATGGTA-  285

seq1  GACACATTTTCTTTTCTCTGATCTTGAAATTACCAAGGAGGAATAATGC-  348
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  GACACATTTTCTTTTCTCTGATCTTG-AATTACCAAGGAGGAATAATGCT  334

seq1  TTCAGTTTGCTACTACATATATCAGGCAAGCACAACATGGCACCTTTTTT  398
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCAGTTTGCTACTACATATATCAGGCAAGCACAACATGGCACC-TTTTT  383

seq1  ATTTGTCTTCCCCTTCCTGGTAGCTATTCTTTGCCCAAAAGG-AAAAACA  447
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTTGTCTTCCCCTTCCTGGTAGCTATTCTTTGCCCAAAAGGAAAAAACA  433

seq1  ACTATTTTTATATACATTTTGAACATCTATGCATATCACAGCTGTGTATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTTATATACATTTTGAACATCTATGCATATCACAGCTGTGTATT  483

seq1  ACACCATCTTCTCTTTGGTAGGCCAAGACACAGTAGAGGTCTACAAAGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATCTTCTCTTTGGTAGGCCAAGACACAGTAGAGGTCTACAAAGTG  533

seq1  AGTTCCAGGATAGCCAGAGCTATACAGAGAAACCCTGCCTCGAAAAAACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGATAGCCAGAGCTATACAGAGAAACCCTGCCTCGAAAAAACA  583

seq1  AAAAAACAAAAACCATATATGTTTTTTAAAAGGTTAGCATTTTTCAGTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAACCATATATGTTTTTTAAAAGGTTAGCATTTTTCAGTTT  633

seq1  TGCTCCCATATCCAGAAATAAAAATGCTTATAACACAGCAAGCAGAATAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCATATCCAGAAATAAAAATGCTTATAACACAGCAAGCAGAATAT  683

seq1  TTACAGTAAAATAAGAATTTAAAAACCTAAAAGCTGAAAGCTAGAGAACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTAAAATAAGAATTTAAAAACCTAAAAGCTGAAAGCTAGAGAACA  733

seq1  AGTTAACATAGCAGCACAAACCTGATACGTGGGATTTTAGACTCTAGGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACATAGCAGCACAAACCTGATACGTGGGATTTTAGACTCTAGGAG  783

seq1  ATTAAGTTTTAAAATCCCACGGAGACCTATTAATGGGTATGTTTATGTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTTTAAAATCCCACGGAGACCTATTAATGGGTATGTTTATGTTT  833

seq1  ATGAAAATGTAGCAGATGGCTGAGAACATGCAGTATCTGCTAAATTCTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATGTAGCAGATGGCTGAGAACATGCAGTATCTGCTAAATTCTCA  883

seq1  AAACATTTTGGAAATAGTAGGAGACCACATGCCCTCTTTTGCTTCTTCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTGGAAATAGTAGGAGACCACATGCCCTCTTTTGCTTCTTCTT  933

seq1  TCTTCCCCCTCATGCCCTAAAGAATCTGTTGATTCATTACCATTATAGCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCCTCATGCCCTAAAGAATCTGTTGATTCATTACCATTATAGCT  983

seq1  TCTGTGTGTGCCTAATTTCTTTTATATATTCACCTCTTGTGGGTTTTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTGCCTAATTTCTTTTATATATTCACCTCTTGTGGGTTTTTTT  1033

seq1  GGAATTC  1054
      |||||||
seq2  GGAATTC  1040