BAC Information

Click to search

BAC

Clone NameB6Ng01-130O24
Chromosome6 (Build37)
Map Location 40,739,486 - 40,893,090
singlet/doubletdoublet
Overlap geneEG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik
Upstream geneMrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam
Downstream geneLOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130O24.bB6Ng01-130O24.g
ACCDH932124DH932125
length899448
definitionDH932124|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O24, 5' end.DH932125|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,739,486 - 40,740,091)(40,892,638 - 40,893,090)
sequence
gaattcaagaccatatgagtttcaggtcataatcaattctgggtcagcct
ggactacagagtgagaatctgttgcaaataactcaagcataaacaaataa
accaaaaatcaagtggttagttcaactggatatacccatacaatagaaaa
atgggtttctacccagcaatatatatggaaattaattaaaaataaataca
gatctaaatgaaagaatttgaagtatgagcttttcataaaaaatacacag
atagtaacactcacaactatgaattaggcaacagtttattaaccaaaatt
caagtacagaaaccaaaggccgaaaatagccatattggatttaactggac
ttaaacttgaaatttgttggcctttaaaagatattatcaaatagagaaaa
acagaggtcaaaggaaaagcactaacatttccaaatgacacatatgatat
gttaatatataaaatatattagaaaatgcaataactcaccaaatgctgct
attcttctaagtgaacataattattaacatgagtcctaaggactaattgc
tatacctacagatcaatgtattattcaactttcatcagagaaacttctcc
ctacatacagtagataggacttaacatagagaacctctactcaacagtgt
acagagaatacaaggttgtggagtgctcagtgctaagttggatggatata
tcacagttctcttatcaattctcagagggctttgaggaagaggtaaaaaa
aaagataagatccataggtgggagaaattcaaagacacaatctgttcagg
gcacaacatggagaaagcacatatggaacccacaatgattgtgacaatat
gtacagactcatgtaaactttatggtagacagaaaattcccagcataga
actttttgtgaatctcatctgttctgtaggcatgcatcccacaaccagat
actctcatatgagttccatatttacataatttaaacacaagacctgttac
gtgaaaaataaaaccaaaacatagaaaatttaaatagtattcagttttca
tacctttgaattaaaaaaaacacatttttgtaaaacattttcagaaaaat
atctagatacctaaagaaaactgtaaggacacatgctccacaatgttcat
agaagccttatttataatagtcagaagatggaaagaacccagatgtccct
caacagaggaatagatgcaaaaaaaaaagtggtacatttatacaatggaa
tactatgcagttattaaaaacaatgaatttatgaaatccttagacaaatg
gatggatctggatgatatcagcctgagtgaggtaacccaatcacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_40739486_40740091
seq2: B6Ng01-130O24.b_50_655

seq1  GAATTCAAGACCATATGAGTTTCAGGTCATAATCAATTCTGGGTCAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACCATATGAGTTTCAGGTCATAATCAATTCTGGGTCAGCCT  50

seq1  GGACTACAGAGTGAGAATCTGTTGCAAATAACTCAAGCATAAACAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACAGAGTGAGAATCTGTTGCAAATAACTCAAGCATAAACAAATAA  100

seq1  ACCAAAAATCAAGTGGTTAGTTCAACTGGATATACCCATACAATAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAATCAAGTGGTTAGTTCAACTGGATATACCCATACAATAGAAAA  150

seq1  ATGGGTTTCTACCCAGCAATATATATGGAAATTAATTAAAAATAAATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTTCTACCCAGCAATATATATGGAAATTAATTAAAAATAAATACA  200

seq1  GATCTAAATGAAAGAATTTGAAGTATGAGCTTTTCATAAAAAATACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAATGAAAGAATTTGAAGTATGAGCTTTTCATAAAAAATACACAG  250

seq1  ATAGTAACACTCACAACTATGAATTAGGCAACAGTTTATTAACCAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAACACTCACAACTATGAATTAGGCAACAGTTTATTAACCAAAATT  300

seq1  CAAGTACAGAAACCAAAGGCCGAAAATAGCCATATTGGATTTAACTGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACAGAAACCAAAGGCCGAAAATAGCCATATTGGATTTAACTGGAC  350

seq1  TTAAACTTGAAATTTGTTGGCCTTTAAAAGATATTATCAAATAGAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTGAAATTTGTTGGCCTTTAAAAGATATTATCAAATAGAGAAAA  400

seq1  ACAGAGGTCAAAGGAAAAGCACTAACATTTCCAAATGACACATATGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGTCAAAGGAAAAGCACTAACATTTCCAAATGACACATATGATAT  450

seq1  GTTAATATATAAAATATATTAGAAAATGCAATAACTCACCAAATGCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATATAAAATATATTAGAAAATGCAATAACTCACCAAATGCTGCT  500

seq1  ATTCTTCTAAGTGAACATAATTATTAACATGAGTCCTAAGGACTAATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTAAGTGAACATAATTATTAACATGAGTCCTAAGGACTAATTGC  550

seq1  TATACCTACAGATCAATGTATTATTCAACTTTCATCAGAGAAACTTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTACAGATCAATGTATTATTCAACTTTCATCAGAGAAACTTCTCC  600

seq1  CTACAT  606
      ||||||
seq2  CTACAT  606

seq1: chr6_40892638_40893090
seq2: B6Ng01-130O24.g_73_526 (reverse)

seq1  TTTTGTGATTGGGTTACCTCACTCAGGCTGATATCATCCAGATCCATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGATTGGGTTACCTCACTCAGGCTGATATCATCCAGATCCATCCA  50

seq1  TTTGTCTAAGGATTTCATAAATTCATTGTTTTTAATAACTGCATAGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTAAGGATTTCATAAATTCATTGTTTTTAATAACTGCATAGTATT  100

seq1  CCATTGTATAAATGTACCACTTTTTTTTTTGCATCTATTCCTCTGTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTATAAATGTACCACTTTTTTTTTTGCATCTATTCCTCTGTTGAG  150

seq1  GGACATCTGGGTTCTTTCCATCTTCTGACTATTATAAATAAGGCTTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTGGGTTCTTTCCATCTTCTGACTATTATAAATAAGGCTTCTAT  200

seq1  GAACATTGTGGAGCATGTGTCCTTACAGTTTTCTTTAGGTATCTAGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTGTGGAGCATGTGTCCTTACAGTTTTCTTTAGGTATCTAGATAT  250

seq1  TTTTCTGAAAATGTTTTACAAAAATGTGTTTTTTTTAATTCAAAGGTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAAAATGTTTTACAAAAATGTGTTTTTTTTAATTCAAAGGTATG  300

seq1  AAAACTGAATACTATTTAAATTTTCTATGTTTTGGTTTTATTTTTCACGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAATACTATTTAAATTTTCTATGTTTTGGTTTTATTTTTCACGT  350

seq1  AACAGGTCTTGTGTTTAAATTATGTAAATATGGAACTCATATGAGAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTCTTGTGTTTAAATTATGTAAATATGGAACTCATATGAGAGTAT  400

seq1  CTGGTTGTGGGATGCATGCCTACAGAACAGATGAGATTCAC-AACAGTGA  449
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  CTGGTTGTGGGATGCATGCCTACAGAACAGATGAGATTCACAAAAAGTGA  450

seq1  ATTC  453
      ||||
seq2  ATTC  454