BAC Information

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BAC

Clone NameB6Ng01-131D07
Chromosome6 (Build37)
Map Location 46,978,752 - 47,150,830
singlet/doubletdoublet
Overlap geneCntnap2, LOC622745, LOC100041064, LOC100041078
Upstream geneRbpsuh-rs3
Downstream geneA930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131D07.bB6Ng01-131D07.g
ACCDH932323DH932324
length1,1211,033
definitionDH932323|Mus musculus domesticus DNA, BAC clone: B6Ng01-131D07, 5' end.DH932324|Mus musculus domesticus DNA, BAC clone: B6Ng01-131D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,149,700 - 47,150,830)(46,978,752 - 46,979,790)
sequence
gaattcacttggtatcatttctaccctgactgtgtcagcaagaatgcacc
tccatccccagaactgcacactgtactcttggctctcttcttggtttcag
aataccatggtgctgattctctcaatctgtgaccagactatgttggaaaa
cttagacttcatcttcccctagacttgccaattgcccttctaattgtcta
atcttttcttctcttccagctaaaacctgagtccccccaaagatatgaac
tgtgggaaacttggacagcattgaaatctccagtgacttacacaatgcct
cacactggagatgataaatatatatttgtttaattagatggattagaaat
aactaatatatattattgacataaaaaagggtgtcttagggttttattgc
tgtgaagaaacaccatgaccaaaaagcaagctggggaggaaagggtttat
ttggcttacattttcagatcatagtccatcattggaggatatcaggacca
gaactcaagcaggtctggaacctggagacaggagctgatacaaaagccat
ggagggtgctgcttactggcttgcttgccctggtttgctcaggctgacta
ccttctttagtcaggactaccttatcagtgatggtaccactcacgatatg
ctaggacctcccccactgatcactaattgaaaaaaaaaaagccatacagc
tggatctcatggaagcatttcctcaactgaactttcatgctcctttcttt
gtgaaaactctagcttgcgtcaagttgatatacaaaaccagcctgtacac
agggcatatactgcacagcctgttaaatgttatgattctaagcaatgaca
ttgctagtttacataagaggaaacagataaacaagatgagaaatagaagt
agctcactaatgtcacatagttgggaaatggaaatgttaaaacctgaaat
atagtgtgaagaagcaaagtctcttctttatggcaatctttgttgtgcca
tcagaaagactaggtggtgcctcagtacaattagtctgtagtcatggtgg
gtacaagcaaagtaataattagtataatccaatggtaataaattcactga
taaacagagttcctctctcat
gaattcttcatctaagctaatacagtggcccactgatatttggtaatatg
tgtcaaaggcaggtgctctctttagctttagacaccacaaacaaaagcta
ctcctgcttcagggaagaatccaccctgaccctgctttgtacaccccaac
atgtatcaaagcattgatcatggctggttatggagtctgtagtaagacct
tgggctggccaagagctggaagtcaggcaggacatgaaacagccctggaa
agtattatctggactacaaaatctcagtaggaaaagaccaaggcagacag
aagatcacagtcagccagatagacggtttagcaagagaacttcatgcaaa
attatttttcttcctttttcctgatgagactcctcacatgaagcagtatg
atacagaaatatgctcttccttccctaccttcctgcttctccttctcctt
ttttctcccctttcttatctcttatcatcaaagcccttacaaagattgcc
taagttagcatggatctaaggtctgcatcacatccttctgctctcttgcc
tccttagaatatttgcttctcgtagattctaccaccctgtactctctcac
ttttcttcttgctcattagctaccactttagtatctgctgcattttctac
ttcacttgagaagcatgttaaaatgtcttcttagtacatacattgccctg
caaattgtatcccatctaacttctaatggttaaaaatgctgtttaagcac
atggtcttaaatcttcagacctcaattttctcaagaatttcagatctgcc
tgttcaactggcaccttgatgtagatctctagtgggcatctcagattgaa
catgcaatagcgaatcttgatggcagggttcgagagatggcccagcagtt
tagagcattggctactcttccagaggtcctgagttcaatcccagcagcac
actgtggcacacaccatctgtatgggatttgatgtcctctttggtgtgtc
tgaaaacagcaaccatatacgaccatataatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47149700_47150830
seq2: B6Ng01-131D07.b_48_1165 (reverse)

seq1  AGAGA-GAACTCTGTTTATTCAGATGAATTATATACCATGAGAATAAATA  49
      ||||| |||||||||||| |||| ||||||   ||||||  || || |  
seq2  AGAGAGGAACTCTGTTTA-TCAG-TGAATTTATTACCATTGGATTATACT  48

seq1  AATAAATAAATAACCTTTGCTTTGTAACCCACAATGACTACAAGACTATT  99
      ||| | ||      |||||| |||| |||||| |||||||| |||||| |
seq2  AATTATTA------CTTTGC-TTGT-ACCCACCATGACTAC-AGACTAAT  89

seq1  TGTTACTGAGGCACCACCTAGTCTGTCCTGATTGGCAC-ACAAAGATTGC  148
      || ||||||||||||||||||||| | |||| |||||| |||||||||||
seq2  TG-TACTGAGGCACCACCTAGTCT-TTCTGA-TGGCACAACAAAGATTGC  136

seq1  CATAAAGAAGAGACTTTGCTTCTTCACACCTATATTTCAGGTTTTAACAT  198
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATAAAGAAGAGACTTTGCTTCTTCACA-CTATATTTCAGGTTTTAACAT  185

seq1  TTCCATTTCCCAACTATGTGACATTAGTGAGCTACTTCTATTTCTCATCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTCCCAACTATGTGACATTAGTGAGCTACTTCTATTTCTCATCT  235

seq1  TGTTTATCTGTTTCCTCTTATGTAAACTAGCAATGTCATTGCTTAGAATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCTGTTTCCTCTTATGTAAACTAGCAATGTCATTGCTTAGAATC  285

seq1  ATAACATTTAACAGGCTGTGCAGTATATGCCCTGTGTACAGGCTGGTTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTTAACAGGCTGTGCAGTATATGCCCTGTGTACAGGCTGGTTTT  335

seq1  GTATATCAACTTGACGCAAGCTAGAGTTTTCACAAAGAAAGGAGCATGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCAACTTGACGCAAGCTAGAGTTTTCACAAAGAAAGGAGCATGAA  385

seq1  AGTTCAGTTGAGGAAATGCTTCCATGAGATCCAGCTGTATGGCTTTTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTTGAGGAAATGCTTCCATGAGATCCAGCTGTATGGCTTTTTTT  435

seq1  TTTTCAATTAGTGATCAGTGGGGGAGGTCCTAGCATATCGTGAGTGGTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTAGTGATCAGTGGGGGAGGTCCTAGCATATCGTGAGTGGTAC  485

seq1  CATCACTGATAAGGTAGTCCTGACTAAAGAAGGTAGTCAGCCTGAGCAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGATAAGGTAGTCCTGACTAAAGAAGGTAGTCAGCCTGAGCAAA  535

seq1  CCAGGGCAAGCAAGCCAGTAAGCAGCACCCTCCATGGCTTTTGTATCAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAAGCAAGCCAGTAAGCAGCACCCTCCATGGCTTTTGTATCAGC  585

seq1  TCCTGTCTCCAGGTTCCAGACCTGCTTGAGTTCTGGTCCTGATATCCTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTCCAGGTTCCAGACCTGCTTGAGTTCTGGTCCTGATATCCTCC  635

seq1  AATGATGGACTATGATCTGAAAATGTAAGCCAAATAAACCCTTTCCTCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGACTATGATCTGAAAATGTAAGCCAAATAAACCCTTTCCTCCC  685

seq1  CAGCTTGCTTTTTGGTCATGGTGTTTCTTCACAGCAATAAAACCCTAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGCTTTTTGGTCATGGTGTTTCTTCACAGCAATAAAACCCTAAGA  735

seq1  CACCCTTTTTTATGTCAATAATATATATTAGTTATTTCTAATCCATCTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTTTTATGTCAATAATATATATTAGTTATTTCTAATCCATCTAA  785

seq1  TTAAACAAATATATATTTATCATCTCCAGTGTGAGGCATTGTGTAAGTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAATATATATTTATCATCTCCAGTGTGAGGCATTGTGTAAGTCA  835

seq1  CTGGAGATTTCAATGCTGTCCAAGTTTCCCACAGTTCATATCTTTGGGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATTTCAATGCTGTCCAAGTTTCCCACAGTTCATATCTTTGGGGG  885

seq1  GACTCAGGTTTTAGCTGGAAGAGAAGAAAAGATTAGACAATTAGAAGGGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGGTTTTAGCTGGAAGAGAAGAAAAGATTAGACAATTAGAAGGGC  935

seq1  AATTGGCAAGTCTAGGGGAAGATGAAGTCTAAGTTTTCCAACATAGTCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCAAGTCTAGGGGAAGATGAAGTCTAAGTTTTCCAACATAGTCTG  985

seq1  GTCACAGATTGAGAGAATCAGCACCATGGTATTCTGAAACCAAGAAGAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGATTGAGAGAATCAGCACCATGGTATTCTGAAACCAAGAAGAGA  1035

seq1  GCCAAGAGTACAGTGTGCAGTTCTGGGGATGGAGGTGCATTCTTGCTGAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAGTACAGTGTGCAGTTCTGGGGATGGAGGTGCATTCTTGCTGAC  1085

seq1  ACAGTCAGGGTAGAAATGATACCAAGTGAATTC  1131
      |||||||||||||||||||||||||||||||||
seq2  ACAGTCAGGGTAGAAATGATACCAAGTGAATTC  1118

seq1: chr6_46978752_46979790
seq2: B6Ng01-131D07.g_70_1102

seq1  GAATTCTTCATCTAAGCTAATACAGTGGCCCACTGATATTTGGTAATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATCTAAGCTAATACAGTGGCCCACTGATATTTGGTAATATG  50

seq1  TGTCAAAGGCAGGTGCTCTCTTTAGCTTTAGACACCACAAACAAAAGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGGCAGGTGCTCTCTTTAGCTTTAGACACCACAAACAAAAGCTA  100

seq1  CTCCTGCTTCAGGGAAGAATCCACCCTGACCCTGCTTTGTACACCCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTTCAGGGAAGAATCCACCCTGACCCTGCTTTGTACACCCCAAC  150

seq1  ATGTATCAAAGCATTGATCATGGCTGGTTATGGAGTCTGTAGTAAGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAAAGCATTGATCATGGCTGGTTATGGAGTCTGTAGTAAGACCT  200

seq1  TGGGCTGGCCAAGAGCTGGAAGTCAGGCAGGACATGAAACAGCCCTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGGCCAAGAGCTGGAAGTCAGGCAGGACATGAAACAGCCCTGGAA  250

seq1  AGTATTATCTGGACTACAAAATCTCAGTAGGAAAAGACCAAGGCAGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTATCTGGACTACAAAATCTCAGTAGGAAAAGACCAAGGCAGACAG  300

seq1  AAGATCACAGTCAGCCAGATAGACGGTTTAGCAAGAGAACTTCATGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCACAGTCAGCCAGATAGACGGTTTAGCAAGAGAACTTCATGCAAA  350

seq1  ATTATTTTTCTTCCTTTTTCCTGATGAGACTCCTCACATGAAGCAGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTCTTCCTTTTTCCTGATGAGACTCCTCACATGAAGCAGTATG  400

seq1  ATACAGAAATATGCTCTTCCTTCCCTACCTTCCTGCTTCTCCTTCTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAATATGCTCTTCCTTCCCTACCTTCCTGCTTCTCCTTCTCCTT  450

seq1  TTTTCTCCCCTTTCTTATCTCTTATCATCAAAGCCCTTACAAAGATTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCCCTTTCTTATCTCTTATCATCAAAGCCCTTACAAAGATTGCC  500

seq1  TAAGTTAGCATGGATCTAAGGTCTGCATCACATCCTTCTGCTCTCTTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAGCATGGATCTAAGGTCTGCATCACATCCTTCTGCTCTCTTGCC  550

seq1  TCCTTAGAATATTTGCTTCTCGTAGATTCTACCACCCTGTACTCTCTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGAATATTTGCTTCTCGTAGATTCTACCACCCTGTACTCTCTCAC  600

seq1  TTTTCTTCTTGCTCATTAGCTACCACTTTAGTATCTGCTGCATTTTCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTTGCTCATTAGCTACCACTTTAGTATCTGCTGCATTTTCTAC  650

seq1  TTCACTTGAGAAGCATGTTAAAATGTCTTCTTAGTACATACATTGCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTGAGAAGCATGTTAAAATGTCTTCTTAGTACATACATTGCCCTG  700

seq1  CAAATTGTATCCCATCTAACTTCTAATGGTTAAAAATGCTGTTTAAGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGTATCCCATCTAACTTCTAATGGTTAAAAATGCTGTTTAAGCAC  750

seq1  ATGGTCTTAAATCTTCAGACCTCAATTTTCTCAAGAATTTCAGATCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTTAAATCTTCAGACCTCAATTTTCTCAAGAATTTCAGATCTGCC  800

seq1  TGTTCAACTGGCACCTTGATGTAGATCTCTAGTGGGCATCTCAGAATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTTCAACTGGCACCTTGATGTAGATCTCTAGTGGGCATCTCAGATTGAA  850

seq1  CATGCAATAGCGAATCTTGATGGCAGGGTTCGAGAGATGGCCCAGCAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATAGCGAATCTTGATGGCAGGGTTCGAGAGATGGCCCAGCAGTT  900

seq1  AAGAGCATTGGCTACTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAAGC  950
       ||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  TAGAGCATTGGCTACTCTTCCAGAGGTCCTGAGTTC-AATCCCAGC-AGC  948

seq1  ACACTGTGGCACACAACCATCTGTAATGGGATTTGATGTCCTCTTTTGGT  1000
      |||||||||||||| ||||||||| |||||||||||||||||| ||||||
seq2  ACACTGTGGCACAC-ACCATCTGT-ATGGGATTTGATGTCCTC-TTTGGT  995

seq1  GTGTCTGAAAACAGCAACCATATACATACATATATATAT  1039
      |||||||||||||||||||||||||   |||||| ||||
seq2  GTGTCTGAAAACAGCAACCATATACGACCATATA-ATAT  1033