BAC Information

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BAC

Clone NameB6Ng01-131I12
Chromosome6 (Build37)
Map Location 7,956,060 - 8,085,978
singlet/doubletdoublet
Overlap geneCol28a1
Upstream geneAcn9, EG667500, Tac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661
Downstream geneBC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131I12.bB6Ng01-131I12.g
ACCDH932566DH932567
length1,011987
definitionDH932566|Mus musculus domesticus DNA, BAC clone: B6Ng01-131I12, 5' end.DH932567|Mus musculus domesticus DNA, BAC clone: B6Ng01-131I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,085,431 - 8,085,978)(7,956,060 - 7,956,813)
sequence
gaattccaagagagcagttgtgagtgcagattcctctgcatgcattgtct
tacaaagaccacatgtctcacaatgagtagcactttctttatcacagaaa
cttttgtaggataaaggaaaggaaaatgcagagtgaataaacattaattc
tatattagtacttatttccaggtcctatgttgtgatatcaatctcctggg
agtgaaatttaagatagtcgcctgtggagatgagttactcatgggccacg
aaccaagttccagtaagggaaggcaatccttctgcaatcttcacattcct
gtaattcctttgaggaagtagtatgaagaagtctccattgctattgatgc
ttggttagtggaagctctaggtttaaggggaagatgctttcttttctttc
tggtgtccttggctcactcttttcaaggtagctgccaagccaactcactg
acaatagatagaagaaaatctcttgaaaacccatgcagtttttatcaaga
ttgctctgtagtacagcttgaggtcagggatggtgattcccagagaagtt
cttttattgctgagaatagttttcgctatcctgggatttttgttattcca
gatgaatttgcaaattgctctttctaactctatgaagaattgagttggaa
tttttatggggattgcattgaatctgttgattgcttttgtcaagatggcc
attttttactatattgatcctaccaatccatgagcctgggagatttttcc
atcttctgagatcgtcttcaatttctttcttcagagaattgaatttcttg
tcatacatatctttcccttgcttagttacagtcacaccaacatattttat
attatttgtgactattgtgaagggtgtcatttctctaatttcttttttaa
cttgtttatcctttgagtagaggaaggatactgatttgtttgagttatgt
atatccagccactttgctgaagtgttatcagctttaaggagttctctggt
ggaatttttgg

gaattctgtaagagactagttgaaatggattgactcccatatacacacac
taattattaatacattagaattgtgaaaggcaactttgcccaggaactga
agatgcttatggaagtaatgggtcattaaccggacataattgttggcctg
ataacttaatgtataattggtttcactgcctcgtcctcacttatatcatg
aaaatcttaacccaattgtccaaaccaggaagaataaataaatatgaagt
gttgatattattttaggcagcatccacagtagtaggttttcacaggactt
tttttgaaggccttatttatccctcccagtttctttcttctccccgttct
accgtgcctacaccactcaccctttcacgatccatcattctctcttgtcc
cccatgttctatctctcctccctcaagtccctcccctcccccatggctct
ttactaatttccagacgtctgtgggaattcaagttttggaacacatacac
atatctgcagtctcaaagctaacacctaaaaataagagaaaacatgtacc
gcttgtctttttcaaggccccattttctcactcagaatgatagtttctag
ctccagccattttacctgcacacttcatttttattaacagctacataaca
atccactgtgtgaatgaaccacatttttattatcctatttcattgggttt
gtttccactttctggctattgtgactagggcagcaatgaacatgaatgag
cagggatctctatagtatgatatagagttctttgtgtatatgccaaggga
tggtatagctgaatcatatgatggatctatattggggttttttgaggcat
ttgtataacaagttccatgcatctgcagtcagtatgtgttcccctttctg
tataccttagccagcatttgtcatcttttctttctttttctctttctttt
tttaacttagctattctgactagggtaaggtaaatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8085431_8085978
seq2: B6Ng01-131I12.b_43_590 (reverse)

seq1  CTTCTCTGGGAATCACCATCCCTGACCTCAAGCTGTACTACAGAGCAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGGGAATCACCATCCCTGACCTCAAGCTGTACTACAGAGCAATC  50

seq1  TTGATAAAAACTGCATGGGTTTTCAAGAGATTTTCTTCTATCTATTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAAACTGCATGGGTTTTCAAGAGATTTTCTTCTATCTATTGTCA  100

seq1  GTGAGTTGGCTTGGCAGCTACCTTGAAAAGAGTGAGCCAAGGACACCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTGGCTTGGCAGCTACCTTGAAAAGAGTGAGCCAAGGACACCAGA  150

seq1  AAGAAAAGAAAGCATCTTCCCCTTAAACCTAGAGCTTCCACTAACCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAGCATCTTCCCCTTAAACCTAGAGCTTCCACTAACCAAGC  200

seq1  ATCAATAGCAATGGAGACTTCTTCATACTACTTCCTCAAAGGAATTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAGCAATGGAGACTTCTTCATACTACTTCCTCAAAGGAATTACAG  250

seq1  GAATGTGAAGATTGCAGAAGGATTGCCTTCCCTTACTGGAACTTGGTTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGAAGATTGCAGAAGGATTGCCTTCCCTTACTGGAACTTGGTTCG  300

seq1  TGGCCCATGAGTAACTCATCTCCACAGGCGACTATCTTAAATTTCACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCATGAGTAACTCATCTCCACAGGCGACTATCTTAAATTTCACTCC  350

seq1  CAGGAGATTGATATCACAACATAGGACCTGGAAATAAGTACTAATATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATTGATATCACAACATAGGACCTGGAAATAAGTACTAATATAGA  400

seq1  ATTAATGTTTATTCACTCTGCATTTTCCTTTCCTTTATCCTACAAAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTTATTCACTCTGCATTTTCCTTTCCTTTATCCTACAAAAGTT  450

seq1  TCTGTGATAAAGAAAGTGCTACTCATTGTGAGACATGTGGTCTTTGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATAAAGAAAGTGCTACTCATTGTGAGACATGTGGTCTTTGTAAG  500

seq1  ACAATGCATGCAGAGGAATCTGCACTCACAACTGCTCTCTTGGAATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCATGCAGAGGAATCTGCACTCACAACTGCTCTCTTGGAATTC  548


seq1: chr6_7956060_7956813
seq2: B6Ng01-131I12.g_70_826

seq1  GAATTCTGTAAGAGACTAGTTGAAATGGATTGACTCCCATATACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAAGAGACTAGTTGAAATGGATTGACTCCCATATACACACAC  50

seq1  TAATTATTAATACATTAGAATTGTGAAAGGCAACTTTGCCCAGGAACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTAATACATTAGAATTGTGAAAGGCAACTTTGCCCAGGAACTGA  100

seq1  AGATGCTTATGGAAGTAATGGGTCATTAACCGGACATAATTGTTGGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTTATGGAAGTAATGGGTCATTAACCGGACATAATTGTTGGCCTG  150

seq1  ATAACTTAATGTATAATTGGTTTCACTGCCTCGTCCTCACTTATATCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTAATGTATAATTGGTTTCACTGCCTCGTCCTCACTTATATCATG  200

seq1  AAAATCTTAACCCAATTGTCCAAACCAGGAAGAATAAATAAATATGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTAACCCAATTGTCCAAACCAGGAAGAATAAATAAATATGAAGT  250

seq1  GTTGATATTATTTTAGGCAGCATCCACAGTAGTAGGTTTTCACAGGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATATTATTTTAGGCAGCATCCACAGTAGTAGGTTTTCACAGGACTT  300

seq1  TTTTTGAAGGCCTTATTTATCCCTCCCAGTTTCTTTCTTCTCCCCGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAGGCCTTATTTATCCCTCCCAGTTTCTTTCTTCTCCCCGTTCT  350

seq1  ACCGTGCCTACACCACTCACCCTTTCACGATCCATCATTCTCTCTTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGCCTACACCACTCACCCTTTCACGATCCATCATTCTCTCTTGTCC  400

seq1  CCCATGTTCTATCTCTCCTCCCTCAAGTCCCTCCCCTCCCCCATGGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTTCTATCTCTCCTCCCTCAAGTCCCTCCCCTCCCCCATGGCTCT  450

seq1  TTACTAATTTCCAGACGTCTGTGGGAATTCAAGTTTTGGAACACATACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATTTCCAGACGTCTGTGGGAATTCAAGTTTTGGAACACATACAC  500

seq1  ATATCTGCAGTCTCAAAGCTAACACCTAAAAATAAGAGAAAACATGTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGCAGTCTCAAAGCTAACACCTAAAAATAAGAGAAAACATGTACC  550

seq1  GCTTGTCTTTTTCAAGGCCCCATTTTCTCACTCAGAATGATAGTTTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTTTTTCAAGGCCCCATTTTCTCACTCAGAATGATAGTTTCTAG  600

seq1  CTCCAGCCA-TTTACCTGCACACTTCATTTTTATTAACAGCTACATAACA  649
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCATTTTACCTGCACACTTCATTTTTATTAACAGCTACATAACA  650

seq1  ATCCACTGTGTGAATGAACCACATTTTTATTATCCTA-TTCATTGGG-TT  697
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  ATCCACTGTGTGAATGAACCACATTTTTATTATCCTATTTCATTGGGTTT  700

seq1  GTTTCCACTTTCTGGCTATTGTGACTAGGGCAGCAATGAACATGAATGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCACTTTCTGGCTATTGTGACTAGGGCAGCAATGAACATGAATGAG  750

seq1  CAGGGAT  754
      |||||||
seq2  CAGGGAT  757


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