BAC Information

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BAC

Clone NameB6Ng01-131J01
Chromosome6 (Build37)
Map Location 75,195,656 - 75,336,242
singlet/doubletdoublet
Overlap geneLOC621306, LOC100042942, LOC668143
Upstream geneEG668132, LOC668136
Downstream geneEG668145, EG546907, LOC100042952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131J01.bB6Ng01-131J01.g
ACCDH932590DH932591
length1,1171,148
definitionDH932590|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J01, 5' end.DH932591|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,335,109 - 75,336,242)(75,195,656 - 75,196,754)
sequence
gaattcttttgttttgttgttttgtttgctttttgtttttgttttttcag
tgtgatttggtctgcttccatggcttgaagtttctcacccatacacagtg
aagatctgacattctagcctgatgacaaccagcatgccttaatacaatga
aatgtacattctactacacttttaatagcttagaaaagtgtgacttagca
gtgtcgatgcctcatgtgatgttaatatttgtttctttgaaaatttatga
cccaatgctcagacagctctgcactggcttcttgaatatcatcctgtcag
gcggatcctcactagtgcttagtcaaactcccatgtaatgaaatgccatt
tgtcttacctagcagcactcagacacactattgaaaagcaaatatcccaa
gaatatttcaagggcttctgttttgttaactacattctttaccgtgggaa
aagaagtcagctatctattttccaaatgtcaaagtttatttttacttcct
cataccagtgagaacaattcaataaatatttttgtgcatcttcacttaat
cttctattttatcatttagagcctgagtgttgagtggtagaaatttccaa
agattcagaaaataactgtccttgaaaacaatacaagaaattaagctatc
tttctaccaaaggtagatccagttcagaaacatgttcaaaacctacagta
accctcatgaaacagagaaagattactcctactcaaataaaagaacaagt
gggacagagaggacattctgtgcactgactttgcacttgcctttaaatgt
gtgtatgcatgtatgtgtgtgtgtgtgttcatgtatatttccacatatat
gtatatatgaaattcaataaacattagtgataaaaactatgtgtaaacat
accaaaaaagtgccttgttgttcatttcttgattaaagcctcaaagtcta
gtgaatgagaatagaatttccatgtatatatgtgtatatatatgtgtgtg
tgtgtatctgtgtcgggtgtgttctggatgaactcagaatcttcactttt
actattgccattagttctaggatgatgtatatatattaaaaattataagt
tatgtttatttgaagca
gaattctttggaaagtcagttgtgttggataatgttttgctggggaagaa
acatgaaggagtgcttcctgaaaggaaaaaatgaaagggtgttttgctaa
aggaaacacatgaaaggatatttgatattagaaggaaccaaaagacagtg
gtcaatgatgctggatggtattggtatgccttgccattccttaatgttcc
ttgtttgttgtgacctcacagaaaaaaaaaaaatggaccgaaaatcttct
gctagtgttctggcagctttttgctgaatctgcgggcttagcctgattgg
caaattgatgtcagctgacacacactcctggagttttgccaagacagagt
ctcctggggaagcaatacccatttgatcatttgtggtatttggagggagt
ataaataggattcaacagacagtaatgggggcaggaggcaggtttgcata
actagctttgcaacacttcattggctcagatcttcctcttgtctgttctt
cacttcattgaaagaggaatgatagagaactctaagcggtgtgcttgctt
gtcctggtcacacctgcatcacagtcagccaagactatattgtcagacac
tgtcaaaaaatacagaataaaagatttgcaaatttggaacaaatagtcaa
attaaagcaaatgagggctaattaacataaaaatatttggaaaacgtata
aaatatgtatgttttataatcaggtagaacctaagagaaaagtaagcata
attcctccttaagtttaagagtcatgagaagtatctgccaaaaagagagc
caaggggaagtgtttacataatataaagttaaaaggtagaaagaccatcc
agagtgaaacagggaaaactttcaggaaggggagggacacacggagaaac
catcttttgactgagcatctgagggtaacattaagttgatgatcacagtg
ccagcatgtgtgtgctggttctatttatgggataaacaccaggcagtctc
ttaaaccataagtgcttgcttcagcaagaacctgacagcgcacaatggag
gtatgtaattctactttatttttatagctttttactttaccattgatttc
aaccacagaccaacaacaacatctcctttcctaagaagcaaaccagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_75335109_75336242
seq2: B6Ng01-131J01.b_43_1159 (reverse)

seq1  TGCTTCAAATATATACATAAACTTATATATTTTACATATATATACATACA  50
      ||||||||  ||| |||| |||||||| |||||  |||||||||||| ||
seq2  TGCTTCAA--ATAAACAT-AACTTATA-ATTTTTAATATATATACAT-CA  45

seq1  TACTTAGGAACTAATGGGCAATAAGTAAAAGTTGAGATTTCTGAGTTCAT  100
      | ||   |||||||| |||||| |||||||||  ||| ||||||||||||
seq2  TCCT--AGAACTAAT-GGCAAT-AGTAAAAGTGAAGA-TTCTGAGTTCAT  90

seq1  ACACAGAAACACACACAGACACAGATACACACACACACATATATATACAC  150
       ||    ||||||| | |||||||||||||||||||||||||||||||||
seq2  CCA---GAACACAC-CCGACACAGATACACACACACACATATATATACAC  136

seq1  ATAATATACATGGAAATTCTATTCTCATTCACTAGACTTTGAGGCTTTAA  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-ATATACATGGAAATTCTATTCTCATTCACTAGACTTTGAGGCTTTAA  185

seq1  TCAAGAAATGAACAACAAGGCACTTTTTTGGTATTGTTTTACACATAGTT  250
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  TCAAGAAATGAACAACAAGGCACTTTTTTGGTAT--GTTTACACATAGTT  233

seq1  TTTATCACTAATGTTTATTGAATTTCATATATACATATATGTGGAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACTAATGTTTATTGAATTTCATATATACATATATGTGGAAATAT  283

seq1  ACATGAACACACACACACACATACATGCATACACACATTTAAAGGCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAACACACACACACACATACATGCATACACACATTTAAAGGCAAGT  333

seq1  GCAAAGTCAGTGCACAGAATGTCCTCTCTGTCCCACTTGTTCTTTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTCAGTGCACAGAATGTCCTCTCTGTCCCACTTGTTCTTTTATTT  383

seq1  GAGTAGGAGTAATCTTTCTCTGTTTCATGAGGGTTACTGTAGGTTTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGAGTAATCTTTCTCTGTTTCATGAGGGTTACTGTAGGTTTTGAA  433

seq1  CATGTTTCTGAACTGGATCTACCTTTGGTAGAAAGATAGCTTAATTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCTGAACTGGATCTACCTTTGGTAGAAAGATAGCTTAATTTCTT  483

seq1  GTATTGTTTTCAAGGACAGTTATTTTCTGAATCTTTGGAAATTTCTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTTTTCAAGGACAGTTATTTTCTGAATCTTTGGAAATTTCTACCA  533

seq1  CTCAACACTCAGGCTCTAAATGATAAAATAGAAGATTAAGTGAAGATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACACTCAGGCTCTAAATGATAAAATAGAAGATTAAGTGAAGATGCA  583

seq1  CAAAAATATTTATTGAATTGTTCTCACTGGTATGAGGAAGTAAAAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATATTTATTGAATTGTTCTCACTGGTATGAGGAAGTAAAAATAAA  633

seq1  CTTTGACATTTGGAAAATAGATAGCTGACTTCTTTTCCCACGGTAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACATTTGGAAAATAGATAGCTGACTTCTTTTCCCACGGTAAAGAA  683

seq1  TGTAGTTAACAAAACAGAAGCCCTTGAAATATTCTTGGGATATTTGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTAACAAAACAGAAGCCCTTGAAATATTCTTGGGATATTTGCTTT  733

seq1  TCAATAGTGTGTCTGAGTGCTGCTAGGTAAGACAAATGGCATTTCATTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGTGTGTCTGAGTGCTGCTAGGTAAGACAAATGGCATTTCATTAC  783

seq1  ATGGGAGTTTGACTAAGCACTAGTGAGGATCCGCCTGACAGGATGATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGTTTGACTAAGCACTAGTGAGGATCCGCCTGACAGGATGATATT  833

seq1  CAAGAAGCCAGTGCAGAGCTGTCTGAGCATTGGGTCATAAATTTTCAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGCCAGTGCAGAGCTGTCTGAGCATTGGGTCATAAATTTTCAAAG  883

seq1  AAACAAATATTAACATCACATGAGGCATCGACACTGCTAAGTCACACTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATATTAACATCACATGAGGCATCGACACTGCTAAGTCACACTTT  933

seq1  TCTAAGCTATTAAAAGTGTAGTAGAATGTACATTTCATTGTATTAAGGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCTATTAAAAGTGTAGTAGAATGTACATTTCATTGTATTAAGGCA  983

seq1  TGCTGGTTGTCATCAGGCTAGAATGTCAGATCTTCACTGTGTATGGGTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTTGTCATCAGGCTAGAATGTCAGATCTTCACTGTGTATGGGTGA  1033

seq1  GAAACTTCAAGCCATGGAAGCAGACCAAATCACACTGAAAAAACAAAAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCAAGCCATGGAAGCAGACCAAATCACACTGAAAAAACAAAAAC  1083

seq1  AAAAAGCAAACAAAACAACAAAACAAAAGAATTC  1134
      ||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAAACAAAACAACAAAACAAAAGAATTC  1117

seq1: chr6_75195656_75196754
seq2: B6Ng01-131J01.g_136_1216

seq1  CTGAAAGGAAAAAATGAAAGGGTGTTTTGCTAAAGGAAACACATGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGAAAAAATGAAAGGGTGTTTTGCTAAAGGAAACACATGAAAGG  50

seq1  ATATTTGATATTAGAAGGAACCAAAAGACAGTGGTCAATGATGCTGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGATATTAGAAGGAACCAAAAGACAGTGGTCAATGATGCTGGATG  100

seq1  GTATTGGTATGCCTTGCCATTCCTTAATGTTCCTTGTTTGTTGTGACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGTATGCCTTGCCATTCCTTAATGTTCCTTGTTTGTTGTGACCTC  150

seq1  ACAGAAAAAAAAAAAATGGACCGAAAATCTTCTGCTAGTGTTCTGGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAAAAAAAAATGGACCGAAAATCTTCTGCTAGTGTTCTGGCAGC  200

seq1  TTTTTGCTGAATCTGCGGGCTTAGCCTGATTGGCAAATTGATGTCAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTGAATCTGCGGGCTTAGCCTGATTGGCAAATTGATGTCAGCTG  250

seq1  ACACACACTCCTGGAGTTTTGCCAAGACAGAGTCTCCTGGGGAAGCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACTCCTGGAGTTTTGCCAAGACAGAGTCTCCTGGGGAAGCAATA  300

seq1  CCCATTTGATCATTTGTGGTATTTGGAGGGAGTATAAATAGGATTCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTGATCATTTGTGGTATTTGGAGGGAGTATAAATAGGATTCAACA  350

seq1  GACAGTAATGGGGGCAGGAGGCAGGTTTGCATAACTAGCTTTGCAACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAATGGGGGCAGGAGGCAGGTTTGCATAACTAGCTTTGCAACACT  400

seq1  TCATTGGCTCAGATCTTCCTCTTGTCTGTTCTTCACTTCATTGAAAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGCTCAGATCTTCCTCTTGTCTGTTCTTCACTTCATTGAAAGAGG  450

seq1  AATGATAGAGAACTCTAAGCGGTGTGCTTGCTTGTCCTGGTCACACCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAGAGAACTCTAAGCGGTGTGCTTGCTTGTCCTGGTCACACCTGC  500

seq1  ATCACAGTCAGCCAAGACTATATTGTCAGACACTGTCAAAAAATACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGTCAGCCAAGACTATATTGTCAGACACTGTCAAAAAATACAGAA  550

seq1  TAAAAGATTTGCAAATTTGGAACAAATAGTCAAATTAAAGCAAATGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATTTGCAAATTTGGAACAAATAGTCAAATTAAAGCAAATGAGGG  600

seq1  CTAATTAACATAAAAATATTTGGAAAACGTATAAAATATGTATGTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAACATAAAAATATTTGGAAAACGTATAAAATATGTATGTTTTAT  650

seq1  AATCAGGTAGAACCTAAGAGAAAAGTAAGCATAATTCCTCCTTAAGTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGTAGAACCTAAGAGAAAAGTAAGCATAATTCCTCCTTAAGTTTA  700

seq1  AGAGTCATGAGAAGTATCTGCCAAAAAGAGAGCCAAGGGGAAGTGTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCATGAGAAGTATCTGCCAAAAAGAGAGCCAAGGGGAAGTGTTTAC  750

seq1  ATAATATAAAGTTAAAAGGTAGAAAGACCATCCAGAGTGAAACA-GGAAA  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATAATATAAAGTTAAAAGGTAGAAAGACCATCCAGAGTGAAACAGGGAAA  800

seq1  ACTTTCAGGAAGGGGAGGGACACACGGAGAAACCATC-TTTGACTGAGCA  848
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACTTTCAGGAAGGGGAGGGACACACGGAGAAACCATCTTTTGACTGAGCA  850

seq1  TCTGAAGGTTAACATTAAGTTGATGATCAACAGTGCCAGCATGTGTGTGC  898
      |||| ||| ||||||||||||||||||| |||||||||||||||||||||
seq2  TCTG-AGGGTAACATTAAGTTGATGATC-ACAGTGCCAGCATGTGTGTGC  898

seq1  TGGTTCTATTTATGGGATAAACACCAGGCAGTCTCTTAAAACATAAGTGC  948
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGTTCTATTTATGGGATAAACACCAGGCAGTCTCTTAAACCATAAGTGC  948

seq1  TTGCCTCCAGCAAAGAACCTGACAGCGCCAACAAATGAGGTATGTAAATT  998
      ||| || |||| ||||||||||||||||  ||||  ||||||||| ||||
seq2  TTG-CTTCAGC-AAGAACCTGACAGCGC--ACAATGGAGGTATGT-AATT  993

seq1  CTACTTTATTTTTTATAAGCTCTTTTACATTTACCCATTGATTTTCAAAC  1048
      |||||||| ||||||| |||| |||||| |||| ||||||||||   |||
seq2  CTACTTTA-TTTTTAT-AGCT-TTTTAC-TTTA-CCATTGATTT--CAAC  1036

seq1  CACAAGACACAAACAACAAACATCTCCTCCCCCAAAGAAGCAAAACCAGC  1098
      |||   | || |||||| ||||||||||   || ||||||| ||||||||
seq2  CAC---AGACCAACAAC-AACATCTCCT-TTCCTAAGAAGC-AAACCAGC  1080

seq1  C  1099
      |
seq2  C  1081