BAC Information

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BAC

Clone NameB6Ng01-131J04
Chromosome6 (Build37)
Map Location 61,819,781 - 61,838,296
singlet/doubletdoublet
Overlap geneC130092O11Rik
Upstream geneMmrn1, LOC100041756, LOC100041764, LOC100042694
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131J04.bB6Ng01-131J04.g
ACCDH932596DH932597
length1,0781,048
definitionDH932596|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J04, 5' end.DH932597|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,837,202 - 61,838,296)(61,819,781 - 61,820,851)
sequence
gaattcaaatggcttactacttagttgtaatgtgaatttcttagaactta
ctttgttaaaaataaagcactgcactgtactgtaaaatatttaaagtatg
aaatatgaaagtagaaaagaattttccctgaagattccttatgcccccaa
ccttcacaacacccaattaaattgaaagcttaaaatgaatttttccagat
gtttacagattgtcttctttccctggattgtgataaccctcacacttgct
tttatctgcattataatttaatgcaggcacctgtcagaaactgtcaatca
caatccctgcctgactgaccattaaaatgtcttaaatcataaaaatgccc
ttttcccttatattaccaatggaaagaactcactagatgctcagtttaga
gtaacaaaatttatggtgaattatctgtgggaaattgttccttttgtttc
tcaaatattttaaattttcttttgattaagccaccctgagaaacgcacat
atttcaatgataatgagctcctgtagagtcggcttgcagggctgggctat
atcatgatacccttcactttgataggaggaagtagcctgctgcatcgtgc
attcattctaagagaatcatctaccacattaagatatatcattcttttat
catctaaatgaggcccaacgtgcctggccattttctggacctagttctgg
aaataaatatatttctcttaaagaatttgtctccctcaccccctttatgt
gtggctctagtgcttttgggtagagtgccgtgtgcctaaaccatgctctg
cctgacggtttaaagtgagcttagagcacttgtgcgtacaccctgactgt
gatgaagagctcatggtatgttgctatatgcaaatggagtcatgtttatc
tccttttgtccagctattgcgcgggctcagtgctttttcttacatggctg
ctagtatgcttattcatataagtttgtaaagaagtgacaagcttttccgc
acatgtgcacatgccatatctaaaatccacgtctttggcgggatatggac
cttgaggaatgtcagttgggtgcccttc
gaattctattattctttgagcatatgcaatacctgtatttatttgtccag
tcacatgttcccattatcatttttagtatagttgatttattactaaaact
gattttatatgctaaataatatgattttaaatatgtttaccagaaagtca
tgactaatactagatgtcagttttctaaataaaagttttattttagtcct
gtaaaatgtaataatctttgtttctaactaagcatattaaagaagacaat
gttaattggagtgcatatttgaattttagtgtctgaagttgttctcattg
aattaatttgtttcgtgcgatgcttttaaatacttagaacttcatatttg
taaaactgttcaatttgaagataagacaattcaaatttagagtaggaaag
aacatgttgaccatgttttgccaaatgcaagttgaaacgtaggatgtatt
acttgatttaataatacttaattaaaatgaaaacgtgtttggaactccag
aaatgtttatttttcttagatgtttgtttatatatattcaacttacaagg
gcaattaaaactataaaactatagaaagcataaaactatagaaagagtcc
ctaaacagatacaggagaaagggtaacctaaatataactctatttccaat
tgatgcttactaaagagtactaaatatcttttatttttataaacatatag
ttgctatttctctgttgagatgagaaaaagataagtgatatctctgtgaa
gtgacatgaacagttttcatatcattcattagatactttgacagtcctga
aattcattcttgaattccgaaatcgtacacgccatgcatgaatattgtga
ctctctcaagtaacagcaaaacaatcgttcctgaatacatttgcataatg
caactttagacacaacttttgttttattggcgtgagagaatctgacatgg
cactcttatgagggctaaattcttgaagctgctgagttcagatcctagcg
tatatcgtatatgggaagcttgatgcgaactgtgccaaaagtagctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_61837202_61838296
seq2: B6Ng01-131J04.b_45_1122 (reverse)

seq1  GAAGGGCACCCAACCTGACATTCCTTCAGGTTTATAACCCGCCAAACACA  50
      ||||||||||||| |||||||||||  ||||  ||| ||||||||| || 
seq2  GAAGGGCACCCAA-CTGACATTCCTCAAGGTCCATATCCCGCCAAAGACG  49

seq1  TAGATATGTAGATATGTGCATGTGCACATGTACAGAAAA-CTTGTTAAAT  99
      | ||| | |||||||| |||||||||||||| | ||||| ||||| |   
seq2  TGGAT-TTTAGATATG-GCATGTGCACATGTGCGGAAAAGCTTGTCA---  94

seq1  GTCTTTTAAAAATATATATGAAATAAACAATACTAGCAGCCATGTAAGAA  149
       |  |||| |||  |||||| ||||| | ||||||||||||||||||| |
seq2  CTTCTTTACAAACTTATATG-AATAAGC-ATACTAGCAGCCATGTAAG-A  141

seq1  AAAAGCAGTGAGCCCTGAGGAAAAAGCTTGAACAAAAAGGAGATAAAATA  199
      ||||||| |||||||    | || |||| ||   |||||||||||||   
seq2  AAAAGCACTGAGCCC--GCGCAATAGCTGGA--CAAAAGGAGATAAA--C  185

seq1  AAGACTCCATTTAGCATATAGCAAAATACCATGAGCTCTTCATCACAGTC  249
      | |||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  ATGACTCCATTT-GCATATAGCAACATACCATGAGCTCTTCATCACAGTC  234

seq1  AGGGTGTACGCTACAAGTGCTTCTAAGCTCACTTTAAACCATAAGGCAGA  299
      ||||||||||| |||||||| ||||||||||||||||||| | |||||||
seq2  AGGGTGTACGC-ACAAGTGC-TCTAAGCTCACTTTAAACCGTCAGGCAGA  282

seq1  GCTTTATTTAGGCACATGGCACTCTACCCAAAAGCACTAGAGCCACACAT  349
      || |  |||||||||| |||||||||||||||||||||||||||||||||
seq2  GCATGGTTTAGGCACACGGCACTCTACCCAAAAGCACTAGAGCCACACAT  332

seq1  AAAGGGGGTGAGGGAGACAAATTCTTTAAGAGAAATATATTTATTTCCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGTGAGGGAGACAAATTCTTTAAGAGAAATATATTTATTTCCAG  382

seq1  AACTAGGTCCAGAAAATAGCCAGGCACCTTTGGCCTCATTTAGAAGATAA  449
      ||||||||||||||||| ||||||||| || ||||||||||||| |||||
seq2  AACTAGGTCCAGAAAATGGCCAGGCACGTTGGGCCTCATTTAGATGATAA  432

seq1  AAAAATGATTTATCTTAATGTGGTAGATGATACTCTTAGAATGAATGCAC  499
      || |||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  AAGAATGATATATCTTAATGTGGTAGATGATTCTCTTAGAATGAATGCAC  482

seq1  GATGCAGCAGGCTACTTCCTCCTATCAAAGTGAAGGGTATCATGATATAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGCAGGCTACTTCCTCCTATCAAAGTGAAGGGTATCATGATATAG  532

seq1  CCCAGCCCTGCAAGCCGACTCTACAGGAGCTCATTATCATTGAAATATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCTGCAAGCCGACTCTACAGGAGCTCATTATCATTGAAATATGT  582

seq1  GCGTTTCTCAGGGTGGCTTAATCAAAAGAAAATTTAAAATATCTGAGAAA  649
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCGTTTCTCAGGGTGGCTTAATCAAAAGAAAATTTAAAATATTTGAGAAA  632

seq1  CAAAAGGAACAATTTCCCACAGATAATTCACCATAAATTTTGTTACTCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAACAATTTCCCACAGATAATTCACCATAAATTTTGTTACTCTA  682

seq1  AACTGAGCATCTAGTGAGTTCTTTCCATTGGTAATATAAGGGAAAAGGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCATCTAGTGAGTTCTTTCCATTGGTAATATAAGGGAAAAGGGC  732

seq1  ATTTTTCTGATTTAAGACATTTTAATGGTCAGTCAGGCAGGGATTGTGAT  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGATTTAAGACATTTTAATGGTCAGTCAGGCAGGGATTGTGAT  782

seq1  TGACAGTTTCTGACAGGTGCCTGCATTAAATTATACTGCAGCTAAAAGCA  849
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  TGACAGTTTCTGACAGGTGCCTGCATTAAATTATAATGCAGATAAAAGCA  832

seq1  AGTGTGAGGGTTATCACAATCCAGGGAAAGAAGACAATCTGTAAACATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAGGGTTATCACAATCCAGGGAAAGAAGACAATCTGTAAACATCT  882

seq1  GGAAAAATTCATTTTAAGCTTTCAATTTAATTCTGTGTTGTGAAGGTTGG  949
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  GGAAAAATTCATTTTAAGCTTTCAATTTAATTGGGTGTTGTGAAGGTTGG  932

seq1  GGGCATAAGGAATCTTCAGGGAAAATTCTTTTCTACTTTCATATTTCATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAAGGAATCTTCAGGGAAAATTCTTTTCTACTTTCATATTTCATA  982

seq1  CTTTAAATATTTTACAGTACAGTGCATTGCTTTATTTTTAACAAAGTAAG  1049
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTTAAATATTTTACAGTACAGTGCAGTGCTTTATTTTTAACAAAGTAAG  1032

seq1  TTCTAAGAAATTCACACTACAACAAAGTAGTAAGCCATTTGAATTC  1095
      |||||||||||||||| |||||| ||||||||||||||||||||||
seq2  TTCTAAGAAATTCACATTACAACTAAGTAGTAAGCCATTTGAATTC  1078

seq1: chr6_61819781_61820851
seq2: B6Ng01-131J04.g_66_1113

seq1  GAATTCTATTAATCTTTGAGCATAGACAATACCTGTATTTATTTGTCCAG  50
      ||||||||||| ||||||||||||  ||||||||||||||||||||||||
seq2  GAATTCTATTATTCTTTGAGCATATGCAATACCTGTATTTATTTGTCCAG  50

seq1  TCACATGTTCCCATTATCATTTTTAGTATAGTTGATTTATTACTAAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTTCCCATTATCATTTTTAGTATAGTTGATTTATTACTAAAACT  100

seq1  GATTTTATATGCTAAATAATATGATTTTAAATATGTTTACCAGAAAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATATGCTAAATAATATGATTTTAAATATGTTTACCAGAAAGTCA  150

seq1  TGACTAATACTAGATGTCAGTTTTCTAAATAAAAGTTTTATTTTAGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATACTAGATGTCAGTTTTCTAAATAAAAGTTTTATTTTAGTCCT  200

seq1  GTAAAATGTAATAATCTTTGTTTCTAACTAAGCATATTAAAGAAGACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGTAATAATCTTTGTTTCTAACTAAGCATATTAAAGAAGACAAT  250

seq1  GTTAATTGGAGTGCAGATTTGAATTTTAGTGTCTGAAGTTGTTCTCATTG  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTAATTGGAGTGCATATTTGAATTTTAGTGTCTGAAGTTGTTCTCATTG  300

seq1  AATTAATTTATTTCTTGCTATGCTTTTAAATACTTAGAACTTCATATTTG  350
      ||||||||| |||| ||| |||||||||||||||||||||||||||||||
seq2  AATTAATTTGTTTCGTGCGATGCTTTTAAATACTTAGAACTTCATATTTG  350

seq1  TAAAACTGTTCAATTTGAAGATAAGACAATTCAAATTTAGAGTAGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGTTCAATTTGAAGATAAGACAATTCAAATTTAGAGTAGGAAAG  400

seq1  AACATGTTGACCATGTTTTGCCAAATGCAAGTTGAAACATATGATGTAGT  450
      |||||||||||||||||||||||||||||||||||||| || |||||| |
seq2  AACATGTTGACCATGTTTTGCCAAATGCAAGTTGAAACGTAGGATGTATT  450

seq1  ACTTGATTTAATAATACTTAATTAAAATGAAAACGTGTTTGGAACTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATTTAATAATACTTAATTAAAATGAAAACGTGTTTGGAACTCCAG  500

seq1  AAATGTTTATTTTTCTTAGATGTTTGTTTATATATATTCAACTTAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||| ||  
seq2  AAATGTTTATTTTTCTTAGATGTTTGTTTATATATATTCAACTTACAAGG  550

seq1  GCAATTAAAACTATAAAACTATAGAAAGCATAAAACTATAGAAAGAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTAAAACTATAAAACTATAGAAAGCATAAAACTATAGAAAGAGTCC  600

seq1  CTAAA-AGATACAGGAGAAAGGGTAACCTAAATATAACTCTATTTCCAAT  649
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGATACAGGAGAAAGGGTAACCTAAATATAACTCTATTTCCAAT  650

seq1  TGATGCTTACTAAAAAGTACTAAATATCTTTTATTTTTATAAACATATAG  699
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGATGCTTACTAAAGAGTACTAAATATCTTTTATTTTTATAAACATATAG  700

seq1  TTGCTATTTCTCTGTTGTGATGAGAAAAAGATAATTGTTATCTCTGTGAA  749
      ||||||||||||||||| |||||||||||||||| || ||||||||||||
seq2  TTGCTATTTCTCTGTTGAGATGAGAAAAAGATAAGTGATATCTCTGTGAA  750

seq1  GTGACATGAACAGTTTTCATATAATTCTTTAGATACTTTGACAGTCCTGA  799
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  GTGACATGAACAGTTTTCATATCATTCATTAGATACTTTGACAGTCCTGA  800

seq1  AATTCATTCTT-AATTCAGAATTCGTAAACAACCATGCATAAATATTGTG  848
      ||||||||||| ||||| ||| ||||| ||  |||||||| |||||||||
seq2  AATTCATTCTTGAATTCCGAAATCGTACAC-GCCATGCATGAATATTGTG  849

seq1  ACATTCTTAAGTAAGCAGCAAAACCATCGTTCCTGAGTACATTTAACATA  898
      ||  ||| |||||| ||||||||| ||||||||||| |||||||  ||||
seq2  ACTCTCTCAAGTAA-CAGCAAAACAATCGTTCCTGAATACATTT-GCATA  897

seq1  TTGCAACATTTAGACACTAACTTAGTGTTTTATTGGTGTGAAGAGAAATC  948
       |||||| ||||||||| |||||  ||||||||||| ||| |||| ||||
seq2  ATGCAAC-TTTAGACAC-AACTT-TTGTTTTATTGGCGTG-AGAG-AATC  942

seq1  ATGACCATGGCAACTCTTATGAGGGCAAATATTTAATTGAGGCTTGTTTA  998
       ||| |||||| |||||||||||||| || |||   |||| |||    | 
seq2  -TGA-CATGGC-ACTCTTATGAGGGCTAA-ATT--CTTGAAGCT--GCTG  984

seq1  AGTTCAGAAGCTTAGCCTATTATCGTTATATTGGGAAGCTTGGTTGCAGA  1048
      ||||||| | | |||| || ||||| |||| |||||||||| | |||  |
seq2  AGTTCAG-ATCCTAGCGTA-TATCG-TATA-TGGGAAGCTT-GATGCGAA  1029

seq1  CATGGTGCAAAAAAGGTAGCTGG  1071
      |   |||| ||||  ||||||||
seq2  C--TGTGCCAAAA--GTAGCTGG  1048