BAC Information

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BAC

Clone NameB6Ng01-131J11
Chromosome6 (Build37)
Map Location 56,407,708 - 56,543,940
singlet/doubletdoublet
Overlap geneEG666688
Upstream geneAdcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream geneLsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131J11.bB6Ng01-131J11.g
ACCDH932610DH932611
length1,1991,072
definitionDH932610|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J11, 5' end.DH932611|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,407,708 - 56,408,909)(56,543,108 - 56,543,940)
sequence
gaattctgcctgctcttgcagaggacctagctagtttcagttcctagcac
ccacgccagctcataactgtaactccagttgcatgggatctgattccctc
ttctgacacaactggcaccaggcactcttatggtgcacaaacatacattc
aggcaaaacacccatgcacaaaaattaaaacacacaaactacttaagaac
gcatgttctatttaatctttattcttcactagtctctgtcctccaatcca
tgtaatttttaaaattattttatttctttacataaagctaaggaacatat
ctatttatatacacacattatagaaatgtcacattgtaatcgtgggtcat
acacccatgatactagaaaattactcattttgcttttgaattcacttttt
tataaagatgacatcaccagaatgatctccttcttcttcttagtttccca
agacgttttcatctcaattaatatgctttgtttctttctaattttatttt
acttttatgttacttttatgtgttttacctccatgtttgtgtactgcatg
catgcagttcccatataggccggaagagggtgctggatcccctagaattg
gttgtgagcagccatgtagatgctgagaatgaaatttctcatgcattttc
ctctggaaacacagccagtgctcttaactgcggaagcacatattcctccc
ccttgtctcttgaaaccatatataatggtgatgtgctttattctgatctg
aagaattataagttacctttaaattcaaaattgtatattccatttttatc
tccacattatcatcagaaacttattaatatacatagatatctcttgatat
gaaataatggaattcgctccctctctgctcactgctactttatgaaagtc
tagctctttattgttgagttgtctgaacactgagatgtttcaccactaac
aactaactacattttcatgaaatttgtttgcctggtttctgtgtcagcgg
ctctttagcatcataatgtatgctctatagcaataactggtgcaatcggc
agaagaaagctatgtggtgtcattttatatttttggtgtggagagcttag
ctttaattgctaaacaatctcctccagtcaaattaattcattttatttct
tacaagctaaattaataagacacaatgaatgaaactaatttatagtata
gaattcaggacaggaactcaaacaggatagaaacctggagtcagaggcat
ggagaaatactacatactggtttgctcctcatagaaactcagttgggttt
ctaagaggacccaggatcatctgcctacccacagtgacctggggcctcct
acattaatcattaattagaaaaatgcttacatccggatctttgtgggggg
cacataatgcttatttcttgttcttattctgttgttgttgttgttatttt
gtttttcttcatttcctacagcctgattctatggagaccttttctcaatt
gagagttccctcttccctaacttgtgccatctagtttgtgtcaagttgac
ataaaactagacaatacaagctcaaacctgaaacaactgaaatattaaca
gttgagagatgaaatcaatgatggcatagtcacccagaggagggcgcctc
acagacgtaagtctgagaggcagaggtaggatcagaagaagaaacattgc
aatgactccacatacatcatttcaaaacagaggaagtggatgcatggtgg
tagaagcctggcacctagccttggggtgattgtgagggccgaaggcaggg
gttatgggggcctatctaggttggactagaactgagcatggtttaggttg
tgaaaattaatcaagccgtgtatttaggattcagagatttttacatatat
ttgttatacttcaacaagcagctttctttgaaagagacaaaacaaagagt
gagagactggcagtagtccacagaggaaataaatttgtcttggccaaagc
caatagcaacaggagcagaacctgccagccagccaaatctatgggttctg
tgtgtggactgagtcaaccatgcgtggaaagtatctctttaaaaaatctc
attacttattattggatgtgtgcagacttttccctctcattaatctctaa
ataatatgatattatttgcatgataatttacattaccttagctattttca
gcactgggatttaactcgagcttcatactatgaagggaagtgccttcatg
aggcactcacagcctttgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_56407708_56408909
seq2: B6Ng01-131J11.b_46_1244

seq1  GAATTCTGCCTGCTCTTGCAGAGGACCTAGCTAGTTTCAGTTCCTAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTGCTCTTGCAGAGGACCTAGCTAGTTTCAGTTCCTAGCAC  50

seq1  CCACGCCAGCTCATAACTGTAACTCCAGTTGCATGGGATCTGATTCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCAGCTCATAACTGTAACTCCAGTTGCATGGGATCTGATTCCCTC  100

seq1  TTCTGACACAACTGGCACCAGGCACTCTTATGGTGCACAAACATACATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACACAACTGGCACCAGGCACTCTTATGGTGCACAAACATACATTC  150

seq1  AGGCAAAACACCCATGCACAAAAATTAAAACACACAAACTACTTAAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAACACCCATGCACAAAAATTAAAACACACAAACTACTTAAGAAC  200

seq1  GCATGTTCTATTTAATCTTTATTCTTCACTAGTCTCTGTCCTCCAATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTCTATTTAATCTTTATTCTTCACTAGTCTCTGTCCTCCAATCCA  250

seq1  TGTAATTTTTAAAATTATTTTATTTCTTTACATAAAGCTAAGGAACATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTTTAAAATTATTTTATTTCTTTACATAAAGCTAAGGAACATAT  300

seq1  CTATTTATATACACACATTATAGAAATGTCACATTGTAATCGTGGGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATATACACACATTATAGAAATGTCACATTGTAATCGTGGGTCAT  350

seq1  ACACCCATGATACTAGAAAATTACTCATTTTGCTTTTGAATTCACTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCATGATACTAGAAAATTACTCATTTTGCTTTTGAATTCACTTTTT  400

seq1  TATAAAGATGACATCACCAGAATGATCTCCTTCTTCTTCTTAGTTTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGATGACATCACCAGAATGATCTCCTTCTTCTTCTTAGTTTCCCA  450

seq1  AGACGTTTTCATCTCAATTAATATGCTTTGTTTCTTTCTAATTTTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTTTTCATCTCAATTAATATGCTTTGTTTCTTTCTAATTTTATTTT  500

seq1  ACTTTTATGTTACTTTTATGTGTTTTACCTCCATGTTTGTGTACTGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATGTTACTTTTATGTGTTTTACCTCCATGTTTGTGTACTGCATG  550

seq1  CATGCAGTTCCCATATAGGCCGGAAGAGGGTGCTGGATCCCCTAGAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGTTCCCATATAGGCCGGAAGAGGGTGCTGGATCCCCTAGAATTG  600

seq1  GTTGTGAGCAGCCATGTAGATGCTGAGAATGAAATTTCTCATGCATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGCAGCCATGTAGATGCTGAGAATGAAATTTCTCATGCATTTTC  650

seq1  CTCTGGAAACACAGCCAGTGCTCTTAACTGCGGAAGCACATATTCCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAACACAGCCAGTGCTCTTAACTGCGGAAGCACATATTCCTCCC  700

seq1  CCTTGTCTCTTGAAACCATATATAATGGTGATGTGCTTTATTCTGATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTCTTGAAACCATATATAATGGTGATGTGCTTTATTCTGATCTG  750

seq1  AAGAATTATAAGTTACCTTTAAATTCAAAATTGTATATTCCATTTTTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTATAAGTTACCTTTAAATTCAAAATTGTATATTCCATTTTTATC  800

seq1  TCCACATTATCATCAGAAACTTATTAATATACATAGATATCTCTTGATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTATCATCAGAAACTTATTAATATACATAGATATCTCTTGATAT  850

seq1  GAAATAATGGAATTCGCTCCCTCTCTGCTCACTGCTACTTTATGAAAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATGGAATTCGCTCCCTCTCTGCTCACTGCTACTTTATGAAAGTC  900

seq1  TAGCTCTTTATTGTTGAGTTGTCTGAACACTGAGATGTTTCACCACTAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTTTATTGTTGAGTTGTCTGAACACTGAGATGTTTCACCACTAAC  950

seq1  AACTAACTACATTTTCCATGATATTTGTTTGCCTGGTTTTCTGTGTTCAG  1000
      ||||||||||||||| ||||| |||||||||||||| |||||||| ||||
seq2  AACTAACTACATTTT-CATGAAATTTGTTTGCCTGG-TTTCTGTG-TCAG  997

seq1  CGGCTCTTTAGCATCATAATGTATGCTCTATAGCAAT-ACT-GTGCAATC  1048
      ||||||||||||||||||||||||||||||||||||| ||| ||||||| 
seq2  CGGCTCTTTAGCATCATAATGTATGCTCTATAGCAATAACTGGTGCAAT-  1046

seq1  CGGCAGATGAAAGCTATGT-GTGTCATTTTATATTTTTG--GTTGTGAGC  1095
      ||||||| ||||||||||| |||||||||||||||||||  || | ||||
seq2  CGGCAGAAGAAAGCTATGTGGTGTCATTTTATATTTTTGGTGTGGAGAGC  1096

seq1  CTAGCCTTTAATGGCTGAGCCATCT-CTCCAGTCCATATATATCATTTTA  1144
       ||| ||||||| ||| | | |||| |||||||| |  ||  ||||||| 
seq2  TTAG-CTTTAATTGCTAAACAATCTCCTCCAGTCAAATTAATTCATTTT-  1144

seq1  ATTTCCTACAAGCTAAATTTATTAAAGACA-AATGAATGAAACTAATTTT  1193
      ||||| ||||||||||||| ||  |||||| |||||||||||||||||| 
seq2  ATTTCTTACAAGCTAAATTAAT--AAGACACAATGAATGAAACTAATTT-  1191

seq1  AATAGTATA  1202
       ||||||||
seq2  -ATAGTATA  1199

seq1: chr6_56543108_56543940
seq2: B6Ng01-131J11.g_315_1141 (reverse)

seq1  AAAAC-AAGGCTGTGATGTGCCTCAGTGAAAAAGCACTTTCCTACAATGT  49
      ||||| |||||||||| |||||||| ||  || |||||| ||| ||  ||
seq2  AAAACAAAGGCTGTGA-GTGCCTCA-TG--AAGGCACTTCCCTTCATAGT  46

seq1  ATGAAGCTCTGAGTTAAATCCCAGGTGCTGGAAAAATAGCTAAGGTAATG  99
      ||||||||| ||||||||||||| ||||||  ||||||||||||||||||
seq2  ATGAAGCTC-GAGTTAAATCCCA-GTGCTG--AAAATAGCTAAGGTAATG  92

seq1  TAAA-TATCATGCAAATAATATCATATTATTTAGAGATTAATGATGAGGG  148
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAAATTATCATGCAAATAATATCATATTATTTAGAGATTAATGA-GAGGG  141

seq1  AAAAGTCTGCACACATCCAATAATAAGTAATGAGATTTTTTAAAGAGATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTGCACACATCCAATAATAAGTAATGAGATTTTTTAAAGAGATA  191

seq1  CTTTCCACGCATGGTTGACTCAGTCCACACACAGAACCCATAGATTTGGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCACGCATGGTTGACTCAGTCCACACACAGAACCCATAGATTTGGC  241

seq1  TGGCTGGCAGGTTCTGCTCCTGTTGCTATTGGCTTTGGCCAAGACAAATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCAGGTTCTGCTCCTGTTGCTATTGGCTTTGGCCAAGACAAATT  291

seq1  TATTTCCTCTGTGGACTACTGCCAGTCTCTCACTCTTTGTTTTGTCTCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTCTGTGGACTACTGCCAGTCTCTCACTCTTTGTTTTGTCTCTT  341

seq1  TCAAAG-AAGCTGCTTGTTGAAGTATAACAAATATATGTAAAAATCTCTG  397
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAAGCTGCTTGTTGAAGTATAACAAATATATGTAAAAATCTCTG  391

seq1  AATCCTAAATACACGGCTTGATTAATTTTCACAACCTAAACCATGCTCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAAATACACGGCTTGATTAATTTTCACAACCTAAACCATGCTCAG  441

seq1  TTCTAGTCCAACCTAGATAGGCCCCCATAACCCCTGCCTTCGGCCCTCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTCCAACCTAGATAGGCCCCCATAACCCCTGCCTTCGGCCCTCAC  491

seq1  AATCACCCCAAGGCTAGGTGCCAGGCTTCTACCACCATGCATCCACTTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCCCAAGGCTAGGTGCCAGGCTTCTACCACCATGCATCCACTTCC  541

seq1  TCTGTTTTGAAATGATGTATGTGGAGTCATTGCAATGTTTCTTCTTCTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTGAAATGATGTATGTGGAGTCATTGCAATGTTTCTTCTTCTGA  591

seq1  TCCTACCTCTGCCTCTCAGACTTACGTCTGTGAGGCGCCCTCCTCTGGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCTCTGCCTCTCAGACTTACGTCTGTGAGGCGCCCTCCTCTGGGT  641

seq1  GACTATGCCATCATTGATTTCATCTCTCAACTGTTAATATTTCAGTTGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGCCATCATTGATTTCATCTCTCAACTGTTAATATTTCAGTTGTT  691

seq1  TCAGGTTTGAGCTTGTATTGTCTAGTTTTATGTCAACTTGACACAAACTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTTGAGCTTGTATTGTCTAGTTTTATGTCAACTTGACACAAACTA  741

seq1  GATGGCACAAGTTAGGGAAGAGGGAACTCTCAATTGAGAAAAGGTCTCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCACAAGTTAGGGAAGAGGGAACTCTCAATTGAGAAAAGGTCTCCA  791

seq1  TAGAATCAGGCTGTAGGAAATGAAGAAAAACAAAAT  833
      ||||||||||||||||||||||||||||||||||||
seq2  TAGAATCAGGCTGTAGGAAATGAAGAAAAACAAAAT  827