BAC Information

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BAC

Clone NameB6Ng01-131J24
Chromosome6 (Build37)
Map Location 45,867,080 - 45,971,584
singlet/doubletdoublet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream geneRbpsuh-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131J24.bB6Ng01-131J24.g
ACCDH932634DH932635
length1,231285
definitionDH932634|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J24, 5' end.DH932635|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,970,321 - 45,971,584)(45,867,080 - 45,867,364)
sequence
gaattcagatttctgaagcagttcagatatttgaactatcattatataat
tgcagcaaaatctacataaacaaaactaggaactttgcatagtgtggtct
aaaccaaatagctcatttagaggagaaaatatggaaaatgatttttctga
aaggctttctttactcttgccttgattaaaaaaatttactaacagtttaa
gagaagtaattaacagaaatcacatttacttaatatacatttatgtgaaa
taatagtttatgattatgtgaggttagaataccatagcttattactctga
gaatttgtttacatttggtttcataataatgaggtatggtgaaataaaaa
aaattcagatagtcattaaatctaaaagtctttatattaataatttctat
tttatttatttattttgctatctatgcactgttgtaatacctagaagata
cagctaactttccaaaattaaaactgaagtaaataactgcaggcttcttc
aagctttgaaacattccaattcttctaattatatgacagatgtgtaggtc
tgtgttggccaaagtgttcttagggaatgaatttattgtagagggtcatg
atcaggccaattatttgaatggaaaaattaaaaaaatagaaatatccaag
ctaatcatagcacattagaaatatcaaaatttatttcccttcctgaaatt
ttgcatcagtagatctgtatttgtgtgtatgagtgtgtcagaagatgctt
cctcactatgctttgacacaaatcatttgaaatgcactaatcattgtgtc
cacctaatctagagctatgaatatgaaaggcaaaattaaaagaactccca
tggagaacagatgttgccccacagaagatttctcatgtcccgccattttt
tatggttgcacaacatgcatccatacatcaatggaaattatgattagttt
ttagacaggtagtgcacatatttttctaaattgactttgtaacttagaaa
aatatttccactgaaaggtaactccatacaaatttgagaaaactagtttc
cattatatatatttgaggtttgccagaatgcagaagagtcatctgatgga
ggaaaggtgttaaggagaagtgatcatagattatcctcttagctgtaagg
tgtcaaataatttcagaacatattgtttatgagaacaggatgattcactg
aatccatttacctgaacacggttttattaat
aagggaaaatgatttgtcgctacttggcatttcaaagtcagtaaactcca
ttggaagagttttaaaccatcgaagcatgtaacttatcagactatagatt
tagaaacattctctttgtggaatgtatgaactaatgtgggttataatatc
agagtgatgaacagacacggtttctactggagtagtaactggcagtccat
tgcccacattaggaaaaaaacatgtttgatgttattgctttcctactgtt
tccttcctaatttcctaagttaactgctatcattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_45970321_45971584
seq2: B6Ng01-131J24.b_48_1278 (reverse)

seq1  ATTAATAAAATCTGTGTTCAGGGTGAATGAGATCAGTTGATTCAAACTCC  50
      |||||||||| | ||||||| ||| ||||   |||| ||| |||   |||
seq2  ATTAATAAAA-CCGTGTTCA-GGTAAATGGATTCAG-TGAATCA---TCC  44

seq1  CTTTGTTCTGTCATTAACAATATAGTTCTTGAATATTAATTTTAAACAAA  100
         |||||  |||| |||||||| |||| |||| |||| ||      | |
seq2  ---TGTTC--TCATAAACAATAT-GTTC-TGAA-ATTATTT-----GACA  81

seq1  CCTTACAGCTAAGAGGATAATCTATATGATTCACTTTCTCCTT-ACACCT  149
      ||||||||||||||||||||||  ||||| |||| |||||||| ||||| 
seq2  CCTTACAGCTAAGAGGATAATC--TATGA-TCAC-TTCTCCTTAACACC-  126

seq1  TTTCCTCCAATTCAGGATGACTCTTCTGCATTCCTTGGCAAAAACCTC-A  198
      |||||||||  ||| ||||||||||||||||||  ||||  ||||||| |
seq2  TTTCCTCCA--TCA-GATGACTCTTCTGCATTC--TGGC--AAACCTCAA  169

seq1  ATATATAT-ATGGAAACTAAGTTATCTCAAATTTGTAATTGGAGTTACCT  247
      |||||||| ||||||||| |||| |||||||||||||  |||||||||||
seq2  ATATATATAATGGAAACT-AGTTTTCTCAAATTTGTA--TGGAGTTACCT  216

seq1  TTCAGTGGAAATATTTTTCTAAGTTACAAAGTCAATTTTAGAAAATATGT  297
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  TTCAGTGGAAATATTTTTCTAAGTTACAAAGTCAATTTAGAAAAATATGT  266

seq1  GCACTACCTGTCTTAAAAACTAATCATAATTTCCATTGATGTATGGATGC  347
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCACTACCTGTC-TAAAAACTAATCATAATTTCCATTGATGTATGGATGC  315

seq1  ATGTTTGTGCAACCATAAAAAATGGCGGGACATGAGAAATCTTCTGTGGG  397
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATG-TTGTGCAACCATAAAAAATGGCGGGACATGAGAAATCTTCTGTGGG  364

seq1  GCAACATCTGTTCTCCATGGGAGTTCTTTTAATTTTGCCTTTCATATTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATCTGTTCTCCATGGGAGTTCTTTTAATTTTGCCTTTCATATTCA  414

seq1  TAGCTCTAGATTAGGTGGACACAATGATTAGTGCATTTCAAATGATTTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTAGATTAGGTGGACACAATGATTAGTGCATTTCAAATGATTTGT  464

seq1  GTCAAAGCATAGTGAGGAAGCATCTTCTGACACACTCATACACACAAATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGCATAGTGAGGAAGCATCTTCTGACACACTCATACACACAAATA  514

seq1  CAGATCTACTGATGCAAAATTTCAGGAAGGGAAATAAATTTTGATATTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTACTGATGCAAAATTTCAGGAAGGGAAATAAATTTTGATATTTC  564

seq1  TAATGTGCTATGATTAGCTTGGATATTTCTATTTTTTTAATTTTTCCATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGCTATGATTAGCTTGGATATTTCTATTTTTTTAATTTTTCCATT  614

seq1  CAAATAATTGGCCTGATCATGACCCTCTACAATAAATTCATTCCCTAAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATTGGCCTGATCATGACCCTCTACAATAAATTCATTCCCTAAGA  664

seq1  ACACTTTGGCCAACACAGACCTACACATCTGTCATATAATTAGAAGAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTGGCCAACACAGACCTACACATCTGTCATATAATTAGAAGAATT  714

seq1  GGAATGTTTCAAAGCTTGAAGAAGCCTGCAGTTATTTACTTCAGTTTTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTTCAAAGCTTGAAGAAGCCTGCAGTTATTTACTTCAGTTTTAA  764

seq1  TTTTGGAAAGTTAGCTGTATCTTCTAGGTATTACAACAGTGCATAGATAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAAAGTTAGCTGTATCTTCTAGGTATTACAACAGTGCATAGATAG  814

seq1  CAAAATAAATAAATAAAATAGAAATTATTAATATAAAGACTTTTAGATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAATAAATAAAATAGAAATTATTAATATAAAGACTTTTAGATTT  864

seq1  AATGACTATCTGAATTTTTTTTATTTCACCATACCTCATTATTATGAAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTATCTGAATTTTTTTTATTTCACCATACCTCATTATTATGAAAC  914

seq1  CAAATGTAAACAAATTCTCAGAGTAATAAGCTATGGTATTCTAACCTCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTAAACAAATTCTCAGAGTAATAAGCTATGGTATTCTAACCTCAC  964

seq1  ATAATCATAAACTATTATTTCACATAAATGTATATTAAGTAAATGTGATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATAAACTATTATTTCACATAAATGTATATTAAGTAAATGTGATT  1014

seq1  TCTGTTAATTACTTCTCTTAAACTGTTAGTAAATTTTTTTAATCAAGGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAATTACTTCTCTTAAACTGTTAGTAAATTTTTTTAATCAAGGCA  1064

seq1  AGAGTAAAGAAAGCCTTTCAGAAAAATCATTTTCCATATTTTCTCCTCTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAGAAAGCCTTTCAGAAAAATCATTTTCCATATTTTCTCCTCTA  1114

seq1  AATGAGCTATTTGGTTTAGACCACACTATGCAAAGTTCCTAGTTTTGTTT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCTATTTGGTTTAGACCACACTATGCAAAGTTCCTAGTTTTGTTT  1164

seq1  ATGTAGATTTTGCTGCAATTATATAATGATAGTTCAAATATCTGAACTGC  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGATTTTGCTGCAATTATATAATGATAGTTCAAATATCTGAACTGC  1214

seq1  TTCAGAAATCTGAATTC  1264
      |||||||||||||||||
seq2  TTCAGAAATCTGAATTC  1231

seq1: chr6_45867080_45867364
seq2: B6Ng01-131J24.g_73_357

seq1  AAGGGAAAATGATTTGTCGCTACTTGGCATTTCAAAGTCAGTAAACTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGGGAAAATGATTTGTCGCTACTTGGCATTTCAAAGTCAGTAAACTCCA  50

seq1  TTGAAAGAGTTTTAAACCATCGAAGCATGTAACTTATCAGACTATAGATT  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGAGTTTTAAACCATCGAAGCATGTAACTTATCAGACTATAGATT  100

seq1  TAGAAACATTCTCTTTGTGGAATGTATGAACTAATGTGGGTTATAATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACATTCTCTTTGTGGAATGTATGAACTAATGTGGGTTATAATATC  150

seq1  AGAGTGATGAACAGACACGGTTTCTACTGGAGTAGTAACTGGCAGTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATGAACAGACACGGTTTCTACTGGAGTAGTAACTGGCAGTCCAT  200

seq1  TGCCCACATTAGGAAAAAAACATGTTTGATGTTATTGCTTTCCTACTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACATTAGGAAAAAAACATGTTTGATGTTATTGCTTTCCTACTGTT  250

seq1  TCCTTCCTAATTTCCTAAGTTAACTGCTATCAGTG  285
      |||||||||||||||||||||||||||||||| ||
seq2  TCCTTCCTAATTTCCTAAGTTAACTGCTATCATTG  285