BAC Information

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BAC

Clone NameB6Ng01-132B03
Chromosome6 (Build37)
Map Location 90,920,112 - 91,110,483
singlet/doubletdoublet
Overlap geneNup210, Hdac11
Upstream geneV1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685
Downstream geneFbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3, Slc6a6, Grip2, C130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132B03.bB6Ng01-132B03.g
ACCDH932969DH932970
length8711,137
definitionDH932969|Mus musculus domesticus DNA, BAC clone: B6Ng01-132B03, 5' end.DH932970|Mus musculus domesticus DNA, BAC clone: B6Ng01-132B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,920,112 - 90,920,982)(91,109,364 - 91,110,483)
sequence
gaattcagcatgggtgaagaaaagaggagaggagaagaaaggagggtgaa
cccagacacagtgcctggtgcctgtcagtctccgcctctttggagactgt
cttccaggctacctccttctgtctgtttctttacttttctgtcttcctct
ctgagatctttgtctttcctctcacttcctcctgccctctatccttgttc
ccttccctgtttctctctttcattggatctccccatctcctcttctcttc
cctttcttctgtctctcaagctttctccaactgcctctaattttattcat
gtctctctgtctcttctgcatacaaagcacactacagactctgcttgcca
ggaagtcaccatattcttgcatccatgttccaaacaaagaagcatttcct
ggactctacaggatggagccagcctccagccacagctctctacatactca
cccacctcagcaatttggtttcaaccaaatggcacttcgaagattaggat
tcaagaagtgacagtattcaatctcaatgtcacagccctttacctcaaag
tggaatcagaacctaagcctgagacatccttgaggtctcacactgggaaa
tccccaaggactaatcacacatgtaactagccaagccctgacctttcaaa
ggcacaaaacagaactcggcctattaagtggccaggtgggatgagattgc
agtcttctgagacccagatcctgatagagatgtgctctttaaaccaagag
actctggggactggagcaagttgtgcaaagacaatagagccaatagcccc
agcctacatgtgggagaggaagtgatggatgtcagtcaagttccagcaca
gaattatttgggggggggggg
gaattctcagagctcagaccatggctggaggggaaagaggcagcagctgt
ggccctggtcctgaatagatgcctgcaaggccccccccccccatgcttaa
caccaccatccccaagtgattttgagcaggtacaggcaacttctgagcca
aggtctttccagacagagtgaagcagcctgttgacttctgccatctgtgg
agtcctgaagccttgggctctgacaggaaacttggggcccagaaactccc
attctctgaggcagataatcaatggcaccctaatgcagttccagccagca
cagactggaaaccatgccctcctccccatgtcaacctgtcacataaagat
ttaccaaagaccttgacttccaataggagtttacagtgtcctgtgcaaag
aggccacgggcagacagtggtagcccagcgtggcctacagttgggatttt
aaagcttacagttagtacattcagaatcagggtagggcctagggctgggg
ctcaggggtagggtgcttgcctaacatgttcaatcccaataaccataaaa
gctaaaaacaaacaaacaaacaaaacaccccctgaaaagcccaaagcaaa
aaaaaaaaaaattaggaaaaaaaaaaaaaaagaaagaaatctgagaatat
catttaataagcagcattctggtttctcttgataaagcaggtcctgtagt
ctgggcccagcagtgcggcaaccaaccacacagcccatatgggaggggaa
gatcttctgcagcacacccccccccccaccagacgcctccatctgccccc
accaccaccttttttgttccctttccggaccctggggcatttcaacccca
ttttgcccgaggagttttcatttacagggagaccttggaatagcatctca
ggccactacaaaacaccaggacaagaataaagtggtcgagtggacaagac
aagggctaatgtcctcctcccaccgaaagggatgccagcagcagccttta
agccttgttcagaagcataggctgaaagccaccaaatatgccaaagctct
ctaaggggttctggtcggccataacccttaaaattggggagtccacatac
ccaacagagatactttcttaaccgccctcctcttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_90920112_90920982
seq2: B6Ng01-132B03.b_45_915

seq1  GAATTCAGCATGGGTGAAGAAAAGAGGAGAGGAGAAGAAAGGAGGGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATGGGTGAAGAAAAGAGGAGAGGAGAAGAAAGGAGGGTGAA  50

seq1  CCCAGACACAGTGCCTGGTGCCTGTCAGTCTCCGCCTCTTTGGAGACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACACAGTGCCTGGTGCCTGTCAGTCTCCGCCTCTTTGGAGACTGT  100

seq1  CTTCCAGGCTACCTCCTTCTGTCTGTTTCTTTACTTTTCTGTCTTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGCTACCTCCTTCTGTCTGTTTCTTTACTTTTCTGTCTTCCTCT  150

seq1  CTGAGATCTTTGTCTTTCCTCTCACTTCCTCCTGCCCTCTATCCTTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCTTTGTCTTTCCTCTCACTTCCTCCTGCCCTCTATCCTTGTTC  200

seq1  CCTTCCCTGTTTCTCTCTTTCATTGGATCTCCCCATCTCCTCTTCTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTGTTTCTCTCTTTCATTGGATCTCCCCATCTCCTCTTCTCTTC  250

seq1  CCTTTCTTCTGTCTCTCAAGCTTTCTCCAACTGCCTCTAATTTTATTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTCTGTCTCTCAAGCTTTCTCCAACTGCCTCTAATTTTATTCAT  300

seq1  GTCTCTCTGTCTCTTCTGCATACAAAGCACACTACAGACTCTGCTTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTGTCTCTTCTGCATACAAAGCACACTACAGACTCTGCTTGCCA  350

seq1  GGAAGTCACCATATTCTTGCATCCATGTTCCAAACAAAGAAGCATTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCACCATATTCTTGCATCCATGTTCCAAACAAAGAAGCATTTCCT  400

seq1  GGACTCTACAGGATGGAGCCAGCCTCCAGCCACAGCTCTCTACATACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTACAGGATGGAGCCAGCCTCCAGCCACAGCTCTCTACATACTCA  450

seq1  CCCACCTCAGCAATTTGGTTTCAACCAAATGGCACTTCGAAGATTAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCAGCAATTTGGTTTCAACCAAATGGCACTTCGAAGATTAGGAT  500

seq1  TCAAGAAGTGACAGTATTCAATCTCAATGTCACAGCCCTTTACCTCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGTGACAGTATTCAATCTCAATGTCACAGCCCTTTACCTCAAAG  550

seq1  TGGAATCAGAACCTAAGCCTGAGACATCCTTGAGGTCTCACACTGGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCAGAACCTAAGCCTGAGACATCCTTGAGGTCTCACACTGGGAAA  600

seq1  TCCCCAAGGACTAATCACACATGTAACTAGCCAAGCCCTGACCTTTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGGACTAATCACACATGTAACTAGCCAAGCCCTGACCTTTCAAA  650

seq1  GGCACAAAACAGAACTCGGCCTATTAAGTGGCCAGGTGGGATGAGATTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAAACAGAACTCGGCCTATTAAGTGGCCAGGTGGGATGAGATTGC  700

seq1  AGTCTTCTGAGACCCAGATCCTGATAGAGATGTGCTCTTTAAACCAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTGAGACCCAGATCCTGATAGAGATGTGCTCTTTAAACCAAGAG  750

seq1  ACTCTGGGGACTGGAGCAAGTTGTGCAAAGACAATAGAGCCAATAGCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGGACTGGAGCAAGTTGTGCAAAGACAATAGAGCCAATAGCCCC  800

seq1  AGCCTACATGTGGGAGAGGAAGTGATGGATGTCAGTCAAGTTCCAGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACATGTGGGAGAGGAAGTGATGGATGTCAGTCAAGTTCCAGCACA  850

seq1  GAACTATTTGGGGGGGGGGGG  871
      ||| |||||||||||||||||
seq2  GAATTATTTGGGGGGGGGGGG  871

seq1: chr6_91109364_91110483
seq2: B6Ng01-132B03.g_65_1201 (reverse)

seq1  ATGAAGAG--GGGCCGCTAAGAAGATATCTCTG-TGGGTA-GTGAGCTCC  46
      ||||||||  |||| | ||||||  |||||||| |||||| |||  ||||
seq2  ATGAAGAGGAGGGCGGTTAAGAAAGTATCTCTGTTGGGTATGTGGACTCC  50

seq1  CC-ATTTTAAGGG-TATGTGCAGA-CAGAACCCCTTAGAG-GCTTTGGCA  92
      || |||||||||| |||| || || ||||||||||||||| |||||||||
seq2  CCAATTTTAAGGGTTATG-GCCGACCAGAACCCCTTAGAGAGCTTTGGCA  99

seq1  TA-TTGGTGGCCTTCAGCCTATGC-TCTGGACAGGGCTTAAAGGCTGCTG  140
      || |||||||| |||||||||||| |||| ||| ||||||||||||||||
seq2  TATTTGGTGGCTTTCAGCCTATGCTTCTGAACAAGGCTTAAAGGCTGCTG  149

seq1  CTGGCATCCC-TTCGGTGGGAGG-GGACATTAGCCCTTGTCCTGTCCACT  188
      |||||||||| |||||||||||| ||||||||||||||||| ||||||||
seq2  CTGGCATCCCTTTCGGTGGGAGGAGGACATTAGCCCTTGTCTTGTCCACT  199

seq1  CGACCACTTTATTC-TGTCCT-GTG-TTTGTAGTGGCCTGAGATGCTATT  235
      |||||||||||||| |||||| ||| ||||||||||||||||||||||||
seq2  CGACCACTTTATTCTTGTCCTGGTGTTTTGTAGTGGCCTGAGATGCTATT  249

seq1  CCAAGGTCTCCCTGTAAATGAAAACT-CTCGGGCAAAATGGGTTTGAAAT  284
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  CCAAGGTCTCCCTGTAAATGAAAACTCCTCGGGCAAAATGGGGTTGAAAT  299

seq1  GCCCCAGGGTCCGG-AAGGGAAC-ATAAAGGTGGTGGTGGGGGCAGATGG  332
      |||||||||||||| |||||||| | ||||||||||||||||||||||||
seq2  GCCCCAGGGTCCGGAAAGGGAACAAAAAAGGTGGTGGTGGGGGCAGATGG  349

seq1  AGGCGTCTGGTGGGGGGGGGGGTGTGCTGCAGAAGATCTTCCCCTCCCAT  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTCTGGTGGGGGGGGGGGTGTGCTGCAGAAGATCTTCCCCTCCCAT  399

seq1  ATGGGCTGTGTGGTTGGTTGCCGCACTGCTGGGCCCAGACTACAGGACCT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGTGTGGTTGGTTGCCGCACTGCTGGGCCCAGACTACAGGACCT  449

seq1  GCTTTATCAAGAGAAGCCAGAATGCTGCTTATTAAATGATATTCTCAGAT  482
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTTTATCAAGAGAAACCAGAATGCTGCTTATTAAATGATATTCTCAGAT  499

seq1  TTCTTTCTTTTTTTTTTTTTTTCCTAATTTTTTTTTTTTTTGCTTTGGGC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTTTTTTTTTTTTTCCTAATTTTTTTTTTTTTTGCTTTGGGC  549

seq1  TTTTCAGGGGGTGTTTTGTTTGTTTGTTTGTTTTTAGTTTTTATGGTTAT  582
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTCAGGGGGTGTTTTGTTTGTTTGTTTGTTTTTAGCTTTTATGGTTAT  599

seq1  TGGGATTGAACATGTTAGGCAAGCACCCTACCCCTGAGCCCCAGCCCTAG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTGAACATGTTAGGCAAGCACCCTACCCCTGAGCCCCAGCCCTAG  649

seq1  GCCCTACCCTGATTCTGAATGTACTAACTGTAAGCTTTAAAATCCCAACT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACCCTGATTCTGAATGTACTAACTGTAAGCTTTAAAATCCCAACT  699

seq1  GTAGGCCACGCTGGGCTACCACTGTCTGCCCGTGGCCTCTTTGCACAGGA  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCCACGCTGGGCTACCACTGTCTGCCCGTGGCCTCTTTGCACAGGA  749

seq1  CACTGTAAACTCCTATTGGAAGTCAAGGTCTTTGGTAAATCTTTATGTGA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAAACTCCTATTGGAAGTCAAGGTCTTTGGTAAATCTTTATGTGA  799

seq1  CAGGTTGACATGGGGAGGAGGGCATGGTTTCCAGTCTGTGCTGGCTGGAA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGACATGGGGAGGAGGGCATGGTTTCCAGTCTGTGCTGGCTGGAA  849

seq1  CTGCATTAGGGTGCCATTGATTATCTGCCTCAGAGAATGGGAGTTTCTGG  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTAGGGTGCCATTGATTATCTGCCTCAGAGAATGGGAGTTTCTGG  899

seq1  GCCCCAAGTTTCCTGTCAGAGCCCAAGGCTTCAGGACTCCACAGATGGCA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAGTTTCCTGTCAGAGCCCAAGGCTTCAGGACTCCACAGATGGCA  949

seq1  GAAGTCAACAGGCTGCTTCACTCTGTCTGGAAAGACCTTGGCTCAGAAGT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAACAGGCTGCTTCACTCTGTCTGGAAAGACCTTGGCTCAGAAGT  999

seq1  TGCCTGTACCTGCTCAAAATCACTTGGGGATGGTGGTGTTAAGCATGGGG  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTACCTGCTCAAAATCACTTGGGGATGGTGGTGTTAAGCATGGGG  1049

seq1  GGGGGGGGCCTTGCAGGCATCTATTCAGGACCAGGGCCACAGCTGCTGCC  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGCCTTGCAGGCATCTATTCAGGACCAGGGCCACAGCTGCTGCC  1099

seq1  TCTTTCCCCTCCAGCCATGGTCTGAGCTCTGAGAATTC  1120
      ||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCCTCCAGCCATGGTCTGAGCTCTGAGAATTC  1137