BAC Information

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BAC

Clone NameB6Ng01-132C09
Chromosome6 (Build37)
Map Location 14,171,490 - 14,172,636
singlet/doubletsinglet
Overlap genenone
Upstream geneGm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043
Downstream geneLOC100040513, LOC667797, Ppp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132C09.bB6Ng01-132C09.g
ACCDH933026DH933027
length8321,124
definitionDH933026|Mus musculus domesticus DNA, BAC clone: B6Ng01-132C09, 5' end.DH933027|Mus musculus domesticus DNA, BAC clone: B6Ng01-132C09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgctcagtccaatggttggctgtgaacatcagcctctgtatt
tgtaaggctctggcagggcctctcaggagacctttcagtatgcacttctt
ggcatccacagtaatgtctgtaaatgtatatgggataaatacccaggtgg
gacagtctctgggtggcctttccttcagtctctgcttaacactttatctc
catatttgttcctgtgtgtattttgttctcctaagaaggactgaagcatc
cacactttggtcttccttcttattaagcttcatgtggtatgtgaattgta
tagtggttatgtggagcttttgggctaatatccagttatcagtgagtgca
taccatgtgtgttcttctgggattgggttacctcactcaggatattttct
agttctatccatttgcctaagaatttcatgaattcattgtttttaatagc
tgagtagtactgcattgtgtaaatgtatcacattttctgtatcaattcct
ctgttgaaggaattgcttatgtgaaaaatgcttacatgtttctctctctc
tctctctctctctctctctctctctctctctctctctctctctctctata
aaaaatcctctctctctcgagagagagtgtgtgtatgtgtgtgtgtatat
atgtgtcctcccacagagagagagagagagacacagtcgggactggtgtt
tacaaacgtctctccacacagagagagagctctagcgccttcatatgtat
tttaagagaagaaaaagaaagtttctctttttctatctgtgacatataga
acacgtgtgtgtgcgtatagagagaaacataa

gaattcttcctttcctgtttgtatctccttgatgtccttcagtgacttgt
tctagctaagacttcttgtactatttgaatatgtatgaagagagtgccat
agctccaggctgagaaacagcttaatgagtggtagtcatagagaagggaa
ggcccagctttgaaatttcatgtttaagcttagctttagtgttgttagtt
accaagagcttcacatattatcctgaagcctgaagtcagcagatttgaca
gtcctctatctgactcaaggtttgcttctgtagataatgataactctaag
gttccatctggattactgaacttttagtgcttcatttaacaattagggta
tttaatgcatttacatgccccattgctgttatacttgtgacatatccata
actagaacataacaatcccagggtatatagattaggaagtctcagaaaca
taagataacatggcagagccatatactacaaagctccatgcagcccacag
agcctcctggtatgttaaggtgagaagcttctaaaagaaaggcagctatg
atggacatcttatagcttaatggttggagttctacaacagcctgtttctt
aggatttctattgctataataaaagacaatgaccacgaaaaccttgagct
gaaataatttattttctcaactagtctgtcatcctgggaaatctgggcag
gaattcaaaactgaaagcttggaggcaggacctgatccttgtggctttgc
tcaacttgctttttgggagtcacaccaccatctcagaggtagtaccatcc
gctcacagtgatctggattcttccaaatcaatcatcaatcaagaaaggct
tgccacagaccaatctggtctaggcattttctcaaacgaagattccaact
ttcagaactgctcatgtatcaatttatataagctaggcagtccagcttgt
taggaagacagactttattttcattaactttttttctcctgcattccagt
ttagaaagctctgaaagaagcactttgatacttgaaagcttcatttgact
gaaaacagacaaggattattctttgagcccagatgtatttattgtcgaga
gagatggtgagttgagaaagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_14171490_14172636
seq2: B6Ng01-132C09.g_66_1189

seq1  GAATTCTTCCTTTCCTGTTTGTATCTCCTTGATGTCCTTCAGTGACTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTTCCTGTTTGTATCTCCTTGATGTCCTTCAGTGACTTGT  50

seq1  TCTAGCTAAGACTTCTTGTACTATTTGAATATGTATGAAGAGAGTGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTAAGACTTCTTGTACTATTTGAATATGTATGAAGAGAGTGCCAT  100

seq1  AGCTCCAGGCTGAGAAACAGCTTAATGAGTGGTAGTCATAGAGAAGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGGCTGAGAAACAGCTTAATGAGTGGTAGTCATAGAGAAGGGAA  150

seq1  GGCCCAGCTTTGAAATTTCATGTTTAAGCTTAGCTTTAGTGTTGTTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCTTTGAAATTTCATGTTTAAGCTTAGCTTTAGTGTTGTTAGTT  200

seq1  ACCAAGAGCTTCACATATTATCCTGAAGCCTGAAGTCAGCAGATTTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGCTTCACATATTATCCTGAAGCCTGAAGTCAGCAGATTTGACA  250

seq1  GTCCTCTATCTGACTCAAGGTTTGCTTCTGTAGATAATGATAACTCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTATCTGACTCAAGGTTTGCTTCTGTAGATAATGATAACTCTAAG  300

seq1  GTTCCATCTGGATTACTGAACTTTTAGTGCTTCATTTAACAATTAGGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATCTGGATTACTGAACTTTTAGTGCTTCATTTAACAATTAGGGTA  350

seq1  TTTAATGCATTTACATGCCCCATTGCTGTTATACTTGTGACATATCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCATTTACATGCCCCATTGCTGTTATACTTGTGACATATCCATA  400

seq1  ACTAGAACATAACAATCCCAGGGTATATAGATTAGGAAGTCTCAGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAACATAACAATCCCAGGGTATATAGATTAGGAAGTCTCAGAAACA  450

seq1  TAAGATAACATGGCAGAGCCATATACTACAAAGCTCCATGCAGCCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAACATGGCAGAGCCATATACTACAAAGCTCCATGCAGCCCACAG  500

seq1  AGCCTCCTGGTATGTTAAGGTGAGAAGCTTCTAAAAGAAAGGCAGCTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTGGTATGTTAAGGTGAGAAGCTTCTAAAAGAAAGGCAGCTATG  550

seq1  ATGGACATCTTATAGCTTAATGGTTGGAGTTCTACAACAGCCTGTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACATCTTATAGCTTAATGGTTGGAGTTCTACAACAGCCTGTTTCTT  600

seq1  AGGATTTCTATTGCTATAATAAAAGACAATGACCACGAAAACCTTGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTCTATTGCTATAATAAAAGACAATGACCACGAAAACCTTGAGCT  650

seq1  GAAATAATTTATTTTCTCAACTAGTCTGTCATCCTGGGAAATCTGGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATTTATTTTCTCAACTAGTCTGTCATCCTGGGAAATCTGGGCAG  700

seq1  GAATTCAAAACTGAAAGCTTGGAGGCAGGACCTGATCCTTGTGGCTTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACTGAAAGCTTGGAGGCAGGACCTGATCCTTGTGGCTTTGC  750

seq1  TCAACTTGCTTTTTGGGAGTCACACCACCATCTCAGAGGTAGTACCATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTGCTTTTTGGGAGTCACACCACCATCTCAGAGGTAGTACCATCC  800

seq1  GCTCACAGTGATCTGGATTCTTCCAAATCAATCATCAATCAAGAAAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAGTGATCTGGATTCTTCCAAATCAATCATCAATCAAGAAAGGCT  850

seq1  TGCCACAGACCAATCTGGTCTAGGCATTTTCTCAAACGAAGATTCCAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGACCAATCTGGTCTAGGCATTTTCTCAAACGAAGATTCCAACT  900

seq1  TTCAGAACTGCTCAATGTATCAAATTTATATAAAGCTAGGCAGTCCAGCT  950
      ||||||||||||| ||||||| ||||||||| ||||||||||||||||||
seq2  TTCAGAACTGCTC-ATGTATC-AATTTATAT-AAGCTAGGCAGTCCAGCT  947

seq1  TGTTAGGAAAGACAGACTTTATTTTCAATTAACTTTTTCTTCTCCTGGCA  1000
      ||||||| |||||||||||||||||| ||||||||||| ||||||||   
seq2  TGTTAGG-AAGACAGACTTTATTTTC-ATTAACTTTTT-TTCTCCTG--C  992

seq1  ATTCCAGTTTTAGAAAGCTCTGAAAGAAGGCACTTTGATACTTGAAAGGC  1050
      ||||||| |||||||||||||||||||| |||||||||||||||||||  
seq2  ATTCCAG-TTTAGAAAGCTCTGAAAGAA-GCACTTTGATACTTGAAAG--  1038

seq1  CTTCAATATGACTGAAAACAGACAAAGATTATTCTTTGAGGCCACAAGAT  1100
      |||| || ||||||||||||||||| |||||||||||||| ||   ||||
seq2  CTTC-ATTTGACTGAAAACAGACAAGGATTATTCTTTGAGCCC---AGAT  1084

seq1  GTATTTAATGTCAGAGAGAGTATGGTGAAGTCTGAAGGAAAAGAAAA  1147
      ||||||| |||| ||||||| |||||| ||| |||    ||||||||
seq2  GTATTTATTGTC-GAGAGAG-ATGGTG-AGT-TGA---GAAAGAAAA  1124


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