BAC Information

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BAC

Clone NameB6Ng01-132L01
Chromosome6 (Build37)
Map Location 40,534,317 - 40,658,837
singlet/doubletdoublet
Overlap geneClec5a, Tas2r138, Mgam
Upstream geneAdck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460
Downstream geneEG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132L01.bB6Ng01-132L01.g
ACCDH933427DH933428
length1,1661,063
definitionDH933427|Mus musculus domesticus DNA, BAC clone: B6Ng01-132L01, 5' end.DH933428|Mus musculus domesticus DNA, BAC clone: B6Ng01-132L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,657,570 - 40,658,837)(40,534,317 - 40,535,391)
sequence
gaattcctaccttacaaaatattagatgattgaaagaccagatatcctaa
gtatactgaactgatcactgcataacatataaatctgtcaaagtatggca
tttatagtgtaaatattcacagttatatgtcattttaaaatgacacttta
cacaagcatagtaatctagagattaataaattagcatactcttagcatgt
ttgacagagactaaatcttgtatattttgccatttgtaacttcacaatcc
agagcttaatcaatctactgggtacaatctctaatctaataacttgatct
gcatcaggtatcatgttatggactctagaacatttcatccatttcaacat
tgtagttaacataaacaattcattttgaaatttgagttggatttataaat
atgtgatatgtattttgtatgtgagagtacaaatatatgggcatgtaaat
tagggacttaaaaccaaaaatgtttttaggattaaaaaatgtgctgaaat
tttaatatatgctgagtaattaagagtaaaaattctattgttggtgtaat
agtaaatagtagggatagggactgaatatgccatggttattggcatgcaa
agcacaggaatccttataatctttaagaaagaagaactcagcatacctga
aggatatgagctaacatcaaccctgcaaaaggacttagtgattacaggga
aaaaaatgcttggagggcactaaggtgatttcacagaagaaattcaggat
gaatcttaaaaactttgcagcaggaaaccaagcacaaaaatgagagcaaa
gagttctgctaaagaaacaacaaaagcaaagattcagcgtgttaacatcg
gctcagaaagacagaagcacggtggacagaactacaactaaatggttagt
ggggaggacttgaggctagacagccaatcaacttcattctgatgaaacac
acatataaaacaaattacagtgaagacacagagctcagtccagacggagc
tcagattctgaagctctttagtgaggactctctcagcagcatttgacacc
tcactatctagcagcctgtgtggattcaatatccgccatggtggagaaca
aatccctgtctaggagtgttcacatctataaggaattagcaaccgaaagc
taagtcaatcctcctc
gaattcaggacatagaagctggatgctagtgagattaccattctgcacac
tagtggttccgtagctctccgtggggacgaagccatcattacttttgcca
aaaacctgtgggactgcaaagaaaaccagctagtggctcagttccagtgt
ggctgcaaatgaaggcagtaaatgagcctcaggggatgccaggaaactgt
gaccacaggaggaagcactgagctctgcctccgtgaggtgtgtgtatatt
cacccttcccttacctacttgtgtatcttttctgagcccgttatagttat
tacatgttcacattgggtcacaaggaaaatccctcttacccaactgctgc
aatttacccacatttccttcctccagtttttcctactggcttcagaacta
aatctttggctacgaggctccctgtactaatgaatttattgagaagaatt
tatgtacaacacacacacacacacacacacacacacacacacacacacac
acacacacctctgttaaatcttgctcttatagttagctcttcatacagct
ttattgggttgaactagaagagtaatttttaaaattatagcaacaataaa
aaagtcaggctaaatactccagtttagattatccagtgaagactcttatt
tttatagtcagttgtgtgtctccattgtagatcatggaacctgatcccat
gtgtctgctagagtatgggaagacaatgtggaagaacttgggcactgaac
ctttacactcaatctggcattctgagtagaataaaacaacaaagatgctg
gggttggtgggagggcttccgcaaatactcacaatacagcagaaaaaagg
tcattccaacaacttgatcactactacgataagccccgagatgatcatgt
gccagttcatgatgatggggattcagggatctgtggggatgagagcgaca
tcgtcagatatggggataaagctgctgcttagttaacctgagtcttctca
gaacactcaggagatctgaagtcagattccactaacagttgaatgaagtt
actcaaacatgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_40657570_40658837
seq2: B6Ng01-132L01.b_50_1215 (reverse)

seq1  GAGGAGGATTCTGAGTAAAACAATTGGAGACATCTTTGAAATACTCTTGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAGTGATTGCTTTTCCTTGCGTGGTTTAATTAAATCAAGGGAGTAGGGAT  100
                                              ||| | ||||
seq2  ----------------------------------------GAGGA-GGAT  9

seq1  TGAC-TAGCTATCCTGTTGCTAATTTCCTTATTAGATTGTGAGCTACTCC  149
      |||| ||||| | | |||||||| ||||||| |||| ||||| | |||||
seq2  TGACTTAGCT-TTCGGTTGCTAA-TTCCTTA-TAGA-TGTGAAC-ACTCC  54

seq1  TAGACAGGGATTTGTCTTCCACCATGGCGG-TATTGGAATCCCACACAGG  198
      |||||||||||||||  ||||||||||||| |||| |||| |||||||||
seq2  TAGACAGGGATTTGTTCTCCACCATGGCGGATATT-GAAT-CCACACAGG  102

seq1  CTGCTAGATAGTGAGGTGTCAAATGCTGCTGAGAGAGTCCTCACTTAAAG  248
      |||||||||||||||||||||||||||||||||||||||||||||  || 
seq2  CTGCTAGATAGTGAGGTGTCAAATGCTGCTGAGAGAGTCCTCACT--AAA  150

seq1  GAGCCTTCAGAATCTGAGCTCCGTCTGGACTTGAGCTCTGTGTCTTCCAC  298
      ||| |||||||||||||||||||||||||| ||||||||||||||| |||
seq2  GAG-CTTCAGAATCTGAGCTCCGTCTGGAC-TGAGCTCTGTGTCTT-CAC  197

seq1  TGTAATTTGTTTTATATGTGTGGTTTCATCAGAATGAAGTTGATTGGCTG  348
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTAATTTGTTTTATATGTGT-GTTTCATCAGAATGAAGTTGATTGGCTG  246

seq1  TCTAGCCTCAAGTCCTCCCCACTAACCATTTAGTTGTAGTTCTGTCCACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTCAAGTCCTCCCCACTAACCATTTAGTTGTAGTTCTGTCCACC  296

seq1  GTGCTTCTGTCTTTCTGAGCCGATGTTAACACGCTGAATCTTTGCTTTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTGTCTTTCTGAGCCGATGTTAACACGCTGAATCTTTGCTTTTG  346

seq1  TTGTTTCTTTAGCAGAACTCTTTGCTCTCATTTTTGTGCTTGGTTTCCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTTTAGCAGAACTCTTTGCTCTCATTTTTGTGCTTGGTTTCCTG  396

seq1  CTGCAAAGTTTTTAAGATTCATCCTGAATTTCTTCTGTGAAATCACCTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAGTTTTTAAGATTCATCCTGAATTTCTTCTGTGAAATCACCTTA  446

seq1  GTGCCCTCCAAGCATTTTTTTCCCTGTAATCACTAAGTCCTTTTGCAGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTCCAAGCATTTTTTTCCCTGTAATCACTAAGTCCTTTTGCAGGG  496

seq1  TTGATGTTAGCTCATATCCTTCAGGTATGCTGAGTTCTTCTTTCTTAAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTTAGCTCATATCCTTCAGGTATGCTGAGTTCTTCTTTCTTAAAG  546

seq1  ATTATAAGGATTCCTGTGCTTTGCATGCCAATAACCATGGCATATTCAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGGATTCCTGTGCTTTGCATGCCAATAACCATGGCATATTCAGT  596

seq1  CCCTATCCCTACTATTTACTATTACACCAACAATAGAATTTTTACTCTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCCCTACTATTTACTATTACACCAACAATAGAATTTTTACTCTTA  646

seq1  ATTACTCAGCATATATTAAAATTTCAGCACATTTTTTAATCCTAAAAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCAGCATATATTAAAATTTCAGCACATTTTTTAATCCTAAAAACA  696

seq1  TTTTTGGTTTTAAGTCCCTAATTTACATGCCCATATATTTGTACTCTCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTTTAAGTCCCTAATTTACATGCCCATATATTTGTACTCTCAC  746

seq1  ATACAAAATACATATCACATATTTATAAATCCAACTCAAATTTCAAAATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAATACATATCACATATTTATAAATCCAACTCAAATTTCAAAATG  796

seq1  AATTGTTTATGTTAACTACAATGTTGAAATGGATGAAATGTTCTAGAGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTATGTTAACTACAATGTTGAAATGGATGAAATGTTCTAGAGTC  846

seq1  CATAACATGATACCTGATGCAGATCAAGTTATTAGATTAGAGATTGTACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATGATACCTGATGCAGATCAAGTTATTAGATTAGAGATTGTACC  896

seq1  CAGTAGATTGATTAAGCTCTGGATTGTGAAGTTACAAATGGCAAAATATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGATTGATTAAGCTCTGGATTGTGAAGTTACAAATGGCAAAATATA  946

seq1  CAAGATTTAGTCTCTGTCAAACATGCTAAGAGTATGCTAATTTATTAATC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTAGTCTCTGTCAAACATGCTAAGAGTATGCTAATTTATTAATC  996

seq1  TCTAGATTACTATGCTTGTGTAAAGTGTCATTTTAAAATGACATATAACT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATTACTATGCTTGTGTAAAGTGTCATTTTAAAATGACATATAACT  1046

seq1  GTGAATATTTACACTATAAATGCCATACTTTGACAGATTTATATGTTATG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATTTACACTATAAATGCCATACTTTGACAGATTTATATGTTATG  1096

seq1  CAGTGATCAGTTCAGTATACTTAGGATATCTGGTCTTTCAATCATCTAAT  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATCAGTTCAGTATACTTAGGATATCTGGTCTTTCAATCATCTAAT  1146

seq1  ATTTTGTAAGGTAGGAATTC  1268
      ||||||||||||||||||||
seq2  ATTTTGTAAGGTAGGAATTC  1166

seq1: chr6_40534317_40535391
seq2: B6Ng01-132L01.g_69_1131

seq1  GAATTCAGGACATAGAAGCTGGATGCTAGTGAGATTACCATTCTGCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACATAGAAGCTGGATGCTAGTGAGATTACCATTCTGCACAC  50

seq1  TAGTGGTTCCGTAGCTCTCCGTGGGGACGAAGCCATCATTACTTTTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTTCCGTAGCTCTCCGTGGGGACGAAGCCATCATTACTTTTGCCA  100

seq1  AAAACCTGTGGGACTGCAAAGAAAACCAGCTAGTGGCTCAGTTCCAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGTGGGACTGCAAAGAAAACCAGCTAGTGGCTCAGTTCCAGTGT  150

seq1  GGCTGCAAATGAAGGCAGTAAATGAGCCTCAGGGGATGCCAGGAAACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAAATGAAGGCAGTAAATGAGCCTCAGGGGATGCCAGGAAACTGT  200

seq1  GACCACAGGAGGAAGCACTGAGCTCTGCCTCCGTGAGGTGTGTGTATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGGAGGAAGCACTGAGCTCTGCCTCCGTGAGGTGTGTGTATATT  250

seq1  CACCCTTCCCTTACCTACTTGTGTATCTTTTCTGAGCCCGTTATAGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTCCCTTACCTACTTGTGTATCTTTTCTGAGCCCGTTATAGTTAT  300

seq1  TACATGTTCACATTGGGTCACAAGGAAAATCCCTCTTACCCAACTGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTCACATTGGGTCACAAGGAAAATCCCTCTTACCCAACTGCTGC  350

seq1  AATTTACCCACATTTCCTTCCTCCAGTTTTTCCTACTGGCTTCAGAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCCACATTTCCTTCCTCCAGTTTTTCCTACTGGCTTCAGAACTA  400

seq1  AATCTTTGGCTACGAGGCTCCCTGTACTAATGAATTTATTGAGAAGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGGCTACGAGGCTCCCTGTACTAATGAATTTATTGAGAAGAATT  450

seq1  TATGTACAACACACACACACACACACACACACACACACACACACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACAACACACACACACACACACACACACACACACACACACACACAC  500

seq1  ACACACACCTCTGTTAAATCTTGCTCTTATAGTTAGCTCTTCATACAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCTCTGTTAAATCTTGCTCTTATAGTTAGCTCTTCATACAGCT  550

seq1  TTATTGGGTTGAACTAGAAGAGTAATTTTTAAAATTATAGCAACAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGGTTGAACTAGAAGAGTAATTTTTAAAATTATAGCAACAATAAA  600

seq1  AAAGTCAGGCTAAATACTCCAGTTTAGATTATCCAGTGAAGACTCTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGGCTAAATACTCCAGTTTAGATTATCCAGTGAAGACTCTTATT  650

seq1  TTTATAGTCAGTTGTGTGTCTCCATTGTAGATCATGGAACCTGATCCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTCAGTTGTGTGTCTCCATTGTAGATCATGGAACCTGATCCCAT  700

seq1  GTGTCTGCTAGAGTATGGGAAGACAATGTGGAAGAACTTGGGCACTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCTAGAGTATGGGAAGACAATGTGGAAGAACTTGGGCACTGAAC  750

seq1  CTTTACACTCAATCTGGCATTCTGAGTAGAATAAAACAACAAAGATGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACACTCAATCTGGCATTCTGAGTAGAATAAAACAACAAAGATGCTG  800

seq1  GGGTTGGTGGGAGGGCTTCCGCAAATACTCACAATACAGCAGAAAAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGTGGGAGGGCTTCCGCAAATACTCACAATACAGCAGAAAAAAGG  850

seq1  TCATTCCAACAACTTTGATCACTACTACGATAAGCCCCGAGATGATCATG  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCATTCCAACAAC-TTGATCACTACTACGATAAGCCCCGAGATGATCATG  899

seq1  TGCCAGTTCATGATGATGGGGATTCAGGGATCTGTGGGGATGAGAGCGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTTCATGATGATGGGGATTCAGGGATCTGTGGGGATGAGAGCGAC  949

seq1  ATCGTCAGAATATGGGGATAAAGCTGCTGGCCTTAGTTAACCTTGAGTCT  1000
      |||||||| ||||||||||||||||||||  ||||||||||| |||||| 
seq2  ATCGTCAG-ATATGGGGATAAAGCTGCTG--CTTAGTTAACC-TGAGTC-  994

seq1  TTCTCAGAACACTCAAGGGAGATCTGGAAGTCAGGAATTCCACTAACAGG  1050
      |||||||||||||||  |||||||| ||||||||  ||||||||||||| 
seq2  TTCTCAGAACACTCA--GGAGATCT-GAAGTCAG--ATTCCACTAACAGT  1039

seq1  TGAAAGGAGGTAACCCAAACATGTC  1075
      || || || || || ||||||||||
seq2  TG-AATGAAGTTACTCAAACATGTC  1063