BAC Information

Click to search

BAC

Clone NameB6Ng01-132N08
Chromosome6 (Build37)
Map Location 81,966,158 - 81,967,101
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042991, LOC232143, 1700009C05Rik, AW146020, Mrpl19
Downstream geneTmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132N08.bB6Ng01-132N08.g
ACCDH933537DH933538
length1,032940
definitionDH933537|Mus musculus domesticus DNA, BAC clone: B6Ng01-132N08, 5' end.DH933538|Mus musculus domesticus DNA, BAC clone: B6Ng01-132N08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgccgcctgagaagctctgtggctcttgtccggaaggaggc
cggccgtctggagctgaggatggcgctgcctcagaagctctgtggctctt
gccgggaaggtggctggttgtctggagctgaagatggcgccgcccagaag
ctctgcgactctcgcccgtcccagaaacggctggcactctgtattccacg
cggtcacccgtgcagcctgccctccgcggagtcccggagccaagaaggct
cccgccggcgcctgtgccacagacctctcaggccgggcagacccccgtgc
tctcaccaggaaggtggccggctgtctggagctgaagatggcaccgccca
gaagctctgcgactctcgcccgtccagaaacggctggcactctgtattcc
acacggtcaccggtgcagcctgccctccgcggagaagcaggacatatctt
aacccttggcatcctgccaacctttacttccataataattctgttataac
taatctctactgctgtgaaaaacaccatggccaagctatgtagaaaagaa
aggttgatttttgttattgttccgagcattag
gaattccaggccagccatgatgattcagttcaagccaatatttaaaaaaa
gaaaataagaagaggatagaaaggaaagtttcatctcgaaggcaaagatg
cttctgtttagtttatatttgtcttgttagctggcaggtgaggatgttct
tatgttgcctccttatcttctcttctcattccccatttccctttaatcat
tcttctcctttgttttagcagacatttattcttagccacttatggagggt
gggaagttgaagatcagggttcctgcatggctaggctcaggccgtgggaa
gctttctcttctgggtgtattggagttctttatatattctgcattgctac
tcctttgtcacgttcagtgcacgttttctctgagtcctcttcttttagct
tcgttccgtaggtgttccctggtgcatggttatctttcctttccactaga
tccttctagttcttgagtttgagtggctcttttaaaaatagcatagctat
cctctcaagcttaaagattcgtgaatgtgtctttttatttgtctttcccc
cattaacaggcatgcatgcatcactcacttccaaccacacacaaggcatt
ccatgaagatgtgaccactgcagagtgtgggtagtgggagaagggaggtc
caagagtgaccagctaagtcactaagacagttggaatcttgcgcatgaga
actactcacactgccagtacgtcgtgagtggcccaacgaaacacgctctt
ctctacaaatgcacgccctcattactcatcttcgagtgcacgaaattgtg
ttgctgctgccccatcaaagggatttgaatagaagggaggtagaagtgaa
gagagtggggaatccctgtgtctggtgggtctgccatggggctttaaact
gtgtcttgctttattcaattctaggttctgtcttagaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_81966158_81967101
seq2: B6Ng01-132N08.g_69_1008

seq1  GAATTCCAGGCCAGCCATGATGATTCAGTTCAAGCCAATATTTAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCATGATGATTCAGTTCAAGCCAATATTTAAAAAAA  50

seq1  GAAAATAAGAAGAGGATAGAAAGGAAAGTTTCATCTCGAAGGCAAAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAGAAGAGGATAGAAAGGAAAGTTTCATCTCGAAGGCAAAGATG  100

seq1  CTTCTGTTTAGTTTATATTTGTCTTGTTAGCTGGCAGGTGAGGATGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTTAGTTTATATTTGTCTTGTTAGCTGGCAGGTGAGGATGTTCT  150

seq1  TATGTTGCCTCCTTATCTTCTCTTCTCATTCCCCATTTCCCTTTAATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGCCTCCTTATCTTCTCTTCTCATTCCCCATTTCCCTTTAATCAT  200

seq1  TCTTCTCCTTTGTTTTAGCAGACATTTATTCTTAGCCACTTATGGAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCTTTGTTTTAGCAGACATTTATTCTTAGCCACTTATGGAGGGT  250

seq1  GGGAAGTTGAAGATCAGGGTTCCTGCATGGCTAGGCTCAGGCCGTGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTTGAAGATCAGGGTTCCTGCATGGCTAGGCTCAGGCCGTGGGAA  300

seq1  GCTTTCTCTTCTGGGTGTATTGGAGTTCTTTATATATTCTGCATTGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTTCTGGGTGTATTGGAGTTCTTTATATATTCTGCATTGCTAC  350

seq1  TCCTTTGTCACGTTCAGTGCACGTTTTCTCTGAGTCCTCTTCTTTTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTCACGTTCAGTGCACGTTTTCTCTGAGTCCTCTTCTTTTAGCT  400

seq1  TCGTTCCGTAGGTGTTCCCTGGTGCATGGTTATCTTTCCTTTCCACTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCCGTAGGTGTTCCCTGGTGCATGGTTATCTTTCCTTTCCACTAGA  450

seq1  TCCTTCTAGTTCTTGAGTTTGAGTGGCTCTTTTAAAAATAGCATAGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAGTTCTTGAGTTTGAGTGGCTCTTTTAAAAATAGCATAGCTAT  500

seq1  CCTCTCAAGCTTAAAGATTCGTGAATGTGTCTTTTTATTTGTCTTTCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAAGCTTAAAGATTCGTGAATGTGTCTTTTTATTTGTCTTTCCCC  550

seq1  CATTAACAGGCATGCATGCATCACTCACTTCCAACCACACACAAGGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACAGGCATGCATGCATCACTCACTTCCAACCACACACAAGGCATT  600

seq1  CCATGAAGATGTGACCACTGCAGAGTGTGGGTAGTGGGAGAAGGGAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAGATGTGACCACTGCAGAGTGTGGGTAGTGGGAGAAGGGAGGTC  650

seq1  CAAGAGTGACCAGCTAAGTCACTAAGACAGTTGGAATCTTGCGCATGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTGACCAGCTAAGTCACTAAGACAGTTGGAATCTTGCGCATGAGA  700

seq1  ACTACTCACACTGCCAGTACGTCGTGAGTGGCCCAACGAAACACGCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCACACTGCCAGTACGTCGTGAGTGGCCCAACGAAACACGCTCTT  750

seq1  CTCTACAAATGCACGCCCTCATTACTCATCTTCGAGTGCACGAAATTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAAATGCACGCCCTCATTACTCATCTTCGAGTGCACGAAATTGTG  800

seq1  TTGCTTGCTGCCCCATCAAAGGGATTTGAATAGAAGGGAGGTAGAAGTGA  850
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGC-TGCTGCCCCATCAAAGGGATTTGAATAGAAGGGAGGTAGAAGTGA  849

seq1  AGAGAGT-GGGAATCCCTGTGTCTGGTGGGTCTGCCAGTGGGGCTTTAAA  899
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAGAGTGGGGAATCCCTGTGTCTGGTGGGTCTGCCA-TGGGGCTTTAAA  898

seq1  CTGTGGCCTTGCTATCATTCAATTCTAGGTTTCTGTCTTAGAGGT  944
      |||| | |||||| | ||||||||||||| |||||||||||||||
seq2  CTGT-GTCTTGCT-TTATTCAATTCTAGG-TTCTGTCTTAGAGGT  940