BAC Information

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BAC

Clone NameB6Ng01-133F05
Chromosome6 (Build37)
Map Location 21,054,193 - 21,163,431
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040838
Downstream geneKcnd2, LOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133F05.bB6Ng01-133F05.g
ACCDH933902DH933903
length1,1421,186
definitionDH933902|Mus musculus domesticus DNA, BAC clone: B6Ng01-133F05, 5' end.DH933903|Mus musculus domesticus DNA, BAC clone: B6Ng01-133F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,054,193 - 21,055,360)(21,162,238 - 21,163,431)
sequence
gaattcaatttaatctgaggaaaaacagtattagcctaacatgaaaaaac
aacaacaacaacaacaacaacaacaaaacaacaaaaacaaaaaaaaaaca
attcttcccatttgggactcccaaagaaatggcatctcatctccactgtg
ttcttcactggtttttggtaagtttgtttttgctttcctgaatagaggta
gggtatttgctttgcccttccaggggcttagatatcatttttatgatgtt
taataattagcattcagaactttaaatcttgcatatcaaagtaagataga
atcacttttaactttaatatacacaacgttgtggtcaggatgcttccaca
agaagtgatgatggctatacatataaatttaaaactgtataattaaggtt
ggatattatgactcttacacttcttgaaagatatcaggagttacaaaagc
aactcctgtcctgtgtaacacaagagtgttaaattgctacaaacaaaaat
tttaatgaaattctgagttcagggaaagcaatcataatattatgacaagc
caattaaagaacaaagagggtaaaattaggcctgtttaaaaacaataaga
attgttgtacttcaggaaatagtcattgcaaaaaaatctcaattctggaa
acaaactttgaattcataccaaattatgatcgcataagatagcacctttc
aaagacacttaaatagttccagaataaatatagtccctaataaggaaagt
ggaccagtgtctagaacacagaaataataatttcagagctcctttcttct
gtcctgctagcatcttctcccatttctattcttggtgcagcagctgacaa
tggcatgttcatctctagttgctgctctttttaaacataccactatccaa
atggtgctcttttcttttttaacttattttctccaccttgatttttgaga
ctttaattttcaaaacctattttaataagggtcttaaatgctttgacctc
cctcctagccaccattcaccagaggtagtagaactgaaggtatagagcag
gagatatgagctgttataaatagttctggggtgaatcagtctgcatgtca
gatacagcagtagttcgcatgatcagcatgtagctaatcaac
gaattccagggctggtaggtcgtaaggctggagctaatgtgccagggaag
tttaggacacctgctgtttgtttgtttgtttgtattagccaagtgaagga
tgcttgcaaggcttgcaaggctgaaaactagcaaattgaaaggagggggt
tgccttccaattgctataaaaaaataagctagcacaaataaaaaagatgg
caccttggcaagatgaagaaagcaagccacccaaataagtaggaggcata
ggtactaaaagcccattatatcgtcctaccctgtaaggatggaacagact
ttgaagcagaccctttccactgggagatcaaatacttacaagcataaaat
aaatacttaacttcatgagaagccttagaaaacataacatctacaatttg
ggaaggcgttgtaatccgttcttcacaagcagctactcacggtgcagaga
attaaacttacctagatttaagcttaggttaaacacatctatattcagat
ccttgctcaggaaatagtgtactgatttgattttatttaacaaactagtt
aacgtctatgaatgaaaaataaagataataaagcaaaacattttagccct
gttgtaaaaatgaaagataatattttcaagtttcaatgtgttttactaag
aacatggaaactagctgttttattattttaatgctcacacaattcatctt
atccagcctgtgcatgaaattcccacagacatcatacttgcttttatctc
tgaataaagcatatctccctctcccaacaggcaagaacctgacattttaa
ttttcagttgttcattgaaacatacagagattgaaaacccaacagagtgc
ttgtgtttcacttcccctttccaagattccaggttcatccccatctcctt
cccatcctgtatcctataccatattgattaaatggaagcaaaagaaactc
agcacataaaattgaattcactaccatctcctatcatatcagttctcttt
cccctcctgatagtgaagaccaggaaaagaccctgatgcactcattcctt
ttatacttccctagcaaacacacagtgacccagtatgttctgattatcca
ttcatgctgactaccattcattcttaatgggcattagagggttgtcgttg
ttaagaacaatcttaggaccggttaaaatgtatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21054193_21055360
seq2: B6Ng01-133F05.b_49_1190

seq1  GAATTCAATTTAATCTGAGGAAAAACAGTATTAGCCTAACATGAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAATCTGAGGAAAAACAGTATTAGCCTAACATGAAAAAAC  50

seq1  AACAACAACAACAACAACAACAACAAAACAACAAAAACAAAAAAAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAACAACAACAACAACAAAACAACAAAAACAAAAAAAAAACA  100

seq1  ATTCTTCCCATTTGGGACTCCCAAAGAAATGGCATCTCATCTCCACTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCCATTTGGGACTCCCAAAGAAATGGCATCTCATCTCCACTGTG  150

seq1  TTCTTCACTGGTTTTTGGTAAGTTTGTTTTTGCTTTCCTGAATAGAGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACTGGTTTTTGGTAAGTTTGTTTTTGCTTTCCTGAATAGAGGTA  200

seq1  GGGTATTTGCTTTGCCCTTCCAGGGGCTTAGATATCATTTTTATGATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTTGCTTTGCCCTTCCAGGGGCTTAGATATCATTTTTATGATGTT  250

seq1  TAATAATTAGCATTCAGAACTTTAAATCTTGCATATCAAAGTAAGATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTAGCATTCAGAACTTTAAATCTTGCATATCAAAGTAAGATAGA  300

seq1  ATCACTTTTAACTTTAATATACACAACGTTGTGGTCAGGATGCTTCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTTAACTTTAATATACACAACGTTGTGGTCAGGATGCTTCCACA  350

seq1  AGAAGTGATGATGGCTATACATATAAATTTAAAACTGTATAATTAAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGATGATGGCTATACATATAAATTTAAAACTGTATAATTAAGGTT  400

seq1  GGATATTATGACTCTTACACTTCTTGAAAGATATCAGGAGTTACAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTATGACTCTTACACTTCTTGAAAGATATCAGGAGTTACAAAAGC  450

seq1  AACTCCTGTCCTGTGTAACACAAGAGTGTTAAATTGCTACAAACAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGTCCTGTGTAACACAAGAGTGTTAAATTGCTACAAACAAAAAT  500

seq1  TTTAATGAAATTCTGAGTTCAGGGAAAGCAATCATAATATTATGACAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGAAATTCTGAGTTCAGGGAAAGCAATCATAATATTATGACAAGC  550

seq1  CAATTAAAGAACAAAGAGGGTAAAATTAGGCCTGTTTAAAAACAATAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAGAACAAAGAGGGTAAAATTAGGCCTGTTTAAAAACAATAAGA  600

seq1  ATTGTTGTACTTCAGGAAATAGTCATTGCAAAAAAATCTCAATTCTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTACTTCAGGAAATAGTCATTGCAAAAAAATCTCAATTCTGGAA  650

seq1  ACAAACTTTGAATTCATACCAAATTATGATCGCATAAGATAGCACCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTTGAATTCATACCAAATTATGATCGCATAAGATAGCACCTTTC  700

seq1  AAAGACACTTAAATAGTTCCAGAATAAATATAGTCCCTAATAAGGAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACTTAAATAGTTCCAGAATAAATATAGTCCCTAATAAGGAAAGT  750

seq1  GGACCAGTGTCTAGAACACAGAAATAATAATTTCAGAGCTCCTTTCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGTGTCTAGAACACAGAAATAATAATTTCAGAGCTCCTTTCTTCT  800

seq1  GTCCTGCTAGCATCTTCTCCCATTTCTATTCTTGGTGCAGCAGCTGACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTAGCATCTTCTCCCATTTCTATTCTTGGTGCAGCAGCTGACAA  850

seq1  TGGCATGTTCATCTCTAGTTGCTGCTCTTTTTAAACATACCACTATCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGTTCATCTCTAGTTGCTGCTCTTTTTAAACATACCACTATCCAA  900

seq1  ATGGTGCTCTTTTCTTTTTTTAACTTATTTTCTCCACCTTGATTTTTTGT  950
      |||||||||||||| ||||||||||||||||||||||||||||||||   
seq2  ATGGTGCTCTTTTC-TTTTTTAACTTATTTTCTCCACCTTGATTTTT--G  947

seq1  AGACTTTAATTTTTCAAAACCTATTTTAATAAGGGTTCTTAAATGCTTTG  1000
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  AGACTTTAA-TTTTCAAAACCTATTTTAATAAGGG-TCTTAAATGCTTTG  995

seq1  ACCTCCCTTCTAGCCCACCATTCACCAGAGGTAGTAGAACTGAAAGGTTA  1050
      |||||||| |||| |||||||||||||||||||||||||||| |||||  
seq2  ACCTCCCTCCTAG-CCACCATTCACCAGAGGTAGTAGAACTG-AAGGT--  1041

seq1  ATAGAGCAAGGGAGGATATGGAGCTGTTTATAAATAGTTTCTTGGTGTGA  1100
      ||||||||  ||| ||||| |||||| ||||||||||||   ||| ||||
seq2  ATAGAGCA--GGA-GATAT-GAGCTG-TTATAAATAGTT--CTGGGGTGA  1084

seq1  ATCCAGTCTGCATTGTCAGGATACCAGCAGTTTAGTTCGCATGAATCAGC  1150
      || ||||||||| ||||| |||| ||||||  ||||||||||| ||||||
seq2  AT-CAGTCTGCA-TGTCA-GATA-CAGCAG--TAGTTCGCATG-ATCAGC  1127

seq1  AGTGGTAGCTCAATCAAC  1168
      |   |||||| |||||||
seq2  A--TGTAGCT-AATCAAC  1142

seq1: chr6_21162238_21163431
seq2: B6Ng01-133F05.g_68_1253 (reverse)

seq1  CCTAT---TTTTAACTGGTCTTAAGATTGTTCTTAACAACAACAACACCT  47
      |||||   ||||||| |||| ||||||||||||||||||| ||||| |||
seq2  CCTATACATTTTAACCGGTCCTAAGATTGTTCTTAACAACGACAAC-CCT  49

seq1  CTAAATGCCATGTAAGAATGAATTGGTAGTCAGCATGGGATGGATAGTCA  97
      || ||||||   |||||||||| ||||||||||||| | ||||||| |||
seq2  CT-AATGCCCATTAAGAATGAA-TGGTAGTCAGCAT-GAATGGATAATCA  96

seq1  G-ACATACTGGGTCACTGTGTGTCTGCTAGGGGAAGTAATAAAGGAATGA  146
      | ||||||||||||||||||||| ||||| ||||||||  ||||||||||
seq2  GAACATACTGGGTCACTGTGTGTTTGCTA-GGGAAGTATAAAAGGAATGA  145

seq1  GTGCCATCAGGGTCCTTTCCTGGTCTTCACTTATCAGGAGAGGAAAGGAG  196
      ||| |||||||||| ||||||||||||||| ||||||||| ||||| |||
seq2  GTG-CATCAGGGTCTTTTCCTGGTCTTCAC-TATCAGGAGGGGAAA-GAG  192

seq1  AAACTGATATGATTAGGAGATGGTAGTGAATTCAATTTTATTGTGCTGAG  246
       ||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  -AACTGATATGA-TAGGAGATGGTAGTGAATTCAATTTTA-TGTGCTGAG  239

seq1  TTTTCTTTTGCTTCCCATTTAATCAATATGGTATAGGATACAGGATGGGA  296
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  -TTTCTTTTGCTT-CCATTTAATCAATATGGTATAGGATACAGGATGGGA  287

seq1  AGGAGATGGGGATGAA-CTGGAATCTTGGGAAGGGGAAGTGAAACACAAG  345
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  AGGAGATGGGGATGAACCTGGAATCTTGGAAAGGGGAAGTGAAACACAAG  337

seq1  CACTCTGTTGGGTTTTCAATCTCTGTATGTTTCAATGAACAACTGAAAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTTGGGTTTTCAATCTCTGTATGTTTCAATGAACAACTGAAAAT  387

seq1  TAAAATGTCAGGTTCTTGCCTGTTGGGAGAGGGAGATATGCTTTATTCAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTCAGGTTCTTGCCTGTTGGGAGAGGGAGATATGCTTTATTCAG  437

seq1  AGATAAAAGCAAGTATGATGTCTGTGGGAATTTCATGCACAGGCTGGATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAGCAAGTATGATGTCTGTGGGAATTTCATGCACAGGCTGGATA  487

seq1  AGATGAATTGTGTGAGCATTAAAATAATAAAACAGCTAGTTTCCATGTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATTGTGTGAGCATTAAAATAATAAAACAGCTAGTTTCCATGTTC  537

seq1  TTAGTAAAACACATTGAAACTTGAAAATATTATCTTTCATTTTTACAACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAAACACATTGAAACTTGAAAATATTATCTTTCATTTTTACAACA  587

seq1  GGGCTAAAATGTTTTGCTTTATTATCTTTATTTTTCATTCATAGACGTTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAAAATGTTTTGCTTTATTATCTTTATTTTTCATTCATAGACGTTA  637

seq1  ACTAGTTTGTTAAATAAAATCAAATCAGTACACTATTTCCTGAGCAAGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTTGTTAAATAAAATCAAATCAGTACACTATTTCCTGAGCAAGGA  687

seq1  TCTGAATATAGATGTGTTTAACCTAAGCTTAAATCTAGGTAAGTTTAATT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATATAGATGTGTTTAACCTAAGCTTAAATCTAGGTAAGTTTAATT  737

seq1  CTCTGCACCGTGAGTAGCTGCTTGTGAAGAACGGATTACAACGCCTTCCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACCGTGAGTAGCTGCTTGTGAAGAACGGATTACAACGCCTTCCC  787

seq1  AAATTGTAGATGTTATGTTTTCTAAGGCTTCTCATGAAGTTAAGTATTTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTAGATGTTATGTTTTCTAAGGCTTCTCATGAAGTTAAGTATTTA  837

seq1  TTTTATGCTTGTAAGTATTTGATCTCCCAGTGGAAAGGGTCTGCTTCAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCTTGTAAGTATTTGATCTCCCAGTGGAAAGGGTCTGCTTCAAA  887

seq1  GTCTGTTCCATCCTTACAGGGTAGGACGATATAATGGGCTTTTAGTACCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCCATCCTTACAGGGTAGGACGATATAATGGGCTTTTAGTACCT  937

seq1  ATGCCTCCTACTTATTTGGGTGGCTTGCTTTCTTCATCTTGCCAAGGTGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCCTACTTATTTGGGTGGCTTGCTTTCTTCATCTTGCCAAGGTGC  987

seq1  CATCTTTTTTATTTGTGCTAGCTTATTTTTTTATAGCAATTGGAAGGCAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTTTATTTGTGCTAGCTTATTTTTTTATAGCAATTGGAAGGCAA  1037

seq1  CCCCCTCCTTTCAATTTGCTAGTTTTCAGCCTTGCAAGCCTTGCAAGCAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCTTTCAATTTGCTAGTTTTCAGCCTTGCAAGCCTTGCAAGCAT  1087

seq1  CCTTCACTTGGCTAATACAAACAAACAAACAAACAGCAGGTGTCCTAAAC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTTGGCTAATACAAACAAACAAACAAACAGCAGGTGTCCTAAAC  1137

seq1  TTCCCTGGCACATTAGCTCCAGCCTTACGACCTACCAGCCCTGGAATTC  1194
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGCACATTAGCTCCAGCCTTACGACCTACCAGCCCTGGAATTC  1186