BAC Information

Click to search

BAC

Clone NameB6Ng01-133J05
Chromosome6 (Build37)
Map Location 7,613,009 - 7,777,969
singlet/doubletdoublet
Overlap geneAsns
Upstream geneLOC545826, Dlx6as, Dlx5, Acn9, EG667500, Tac1, LOC667511
Downstream geneEG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133J05.bB6Ng01-133J05.g
ACCDH934086DH934087
length975586
definitionDH934086|Mus musculus domesticus DNA, BAC clone: B6Ng01-133J05, 5' end.DH934087|Mus musculus domesticus DNA, BAC clone: B6Ng01-133J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,613,009 - 7,613,526)(7,777,384 - 7,777,969)
sequence
gaattcacatattaagaattcacatattaagaattgatattcttggattc
gctaaccgaatccaagaacacattaaagcaatcatccatcctgaccaagt
aggttttattccagggatgcagggatggtttaatatacgaaaatccatca
atgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatc
tcgttagatgcagaaaaagcatttgacaagatccaacacccattcatgat
aaaagttctggaaagatcaggaattcaaggccaatacctaaacatgataa
aagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaag
ctggaagcaatcccactaaaatcagggactagacaaggctgcccactttc
tccctaccttttcaacatagtacttgaagtattagccagagcaattcgac
aacaaaaggagatcaaggggatacaaataggaaaagaggaagtcaaaata
tcactttttgcagatgatatgatagtatatataagtgaccctaaaaattc
caacagagaactcctaaacctgataaacagcttcggtgaagtagctggat
ataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaa
caggctgagaaagaaattagggaaacaacacccttctcaatagccacaaa
taatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgt
atgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcaga
agatggaaagatctcccatgctcatggattggcaggaccaacattgtaaa
aatggctatcttgccaaaagcaatctacagattcaatgcaatccccatta
aaattccaactcaattcttcaacgaattagaagagcaatttgcaaattca
tctgaataacaaaaaccgaggatag
gaattcaggaacaaactagagccctcagtaccactgccccctgacgttga
aagcagacttctaatgggccacagagatgataatagtgactgtggagtgc
tcagctctgtcacccttccaaagctcgggaactctgcagaagaaagttca
gaagactgcagagccagatcttgggaaggagtgctgagaactgctgtctt
ctggacgtgatggagctgtcatacccatacaccccacagttgtaattacc
tgtacaagacctgctcaagactgcggccatcatcgctctaccaaccacag
atgggcaagcagcttacaagacctcaatccatggggctacaggcagggaa
tgcttcctaggggaggggcagccatattctttagtggtacagccactcgt
aagttgcccttactcaaacctccactcatgttatgtaggcaataccagtt
aaatgaagcagtaggcccacacaaccacgcacaaacattaaagaggaaga
ggttgttgaagaagaagagggatgtttggtctggaagggagatatgagat
gatttatatgtacgtgtatatgtatatatatgcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_7613009_7613526
seq2: B6Ng01-133J05.b_49_566

seq1  GAATTCACATATTAAGAATTCACATATTAAGAATTGATATTCTTGGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATATTAAGAATTCACATATTAAGAATTGATATTCTTGGATTC  50

seq1  GCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGT  100

seq1  AGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCA  150

seq1  ATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATC  200

seq1  TCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT  250

seq1  AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAA  300

seq1  AAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAG  350

seq1  CTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTC  400

seq1  TCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGAC  450

seq1  AACAAAAGGAGATCAAGGGGATACAAATAGGAAAAGAGGAAGTCAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGGAGATCAAGGGGATACAAATAGGAAAAGAGGAAGTCAAAATA  500

seq1  TCACTTTTTGCAGATGAT  518
      ||||||||||||||||||
seq2  TCACTTTTTGCAGATGAT  518

seq1: chr6_7777384_7777969
seq2: B6Ng01-133J05.g_69_654 (reverse)

seq1  TTTGCATATATATACATATACACGTACATATAAATCATCTCATATCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATATATATACATATACACGTACATATAAATCATCTCATATCTCCC  50

seq1  TTCCAGACCAAACATCCCTCTTCTTCTTCAACAACCTCTTCCTCTTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGACCAAACATCCCTCTTCTTCTTCAACAACCTCTTCCTCTTTAAT  100

seq1  GTTTGTGCGTGGTTGTGTGGGCCTACTGCTTCATTTAACTGGTATTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGCGTGGTTGTGTGGGCCTACTGCTTCATTTAACTGGTATTGCCT  150

seq1  ACATAACATGAGTGGAGGTTTGAGTAAGGGCAACTTACGAGTGGCTGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACATGAGTGGAGGTTTGAGTAAGGGCAACTTACGAGTGGCTGTAC  200

seq1  CACTAAAGAATATGGCTGCCCCTCCCCTAGGAAGCATTCCCTGCCTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAGAATATGGCTGCCCCTCCCCTAGGAAGCATTCCCTGCCTGTAG  250

seq1  CCCCATGGATTGAGGTCTTGTAAGCTGCTTGCCCATCTGTGGTTGGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGGATTGAGGTCTTGTAAGCTGCTTGCCCATCTGTGGTTGGTAGA  300

seq1  GCGATGATGGCCGCAGTCTTGAGCAGGTCTTGTACAGGTAATTACAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGATGGCCGCAGTCTTGAGCAGGTCTTGTACAGGTAATTACAACTG  350

seq1  TGGGGTGTATGGGTATGACAGCTCCATCACGTCCAGAAGACAGCAGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTATGGGTATGACAGCTCCATCACGTCCAGAAGACAGCAGTTCT  400

seq1  CAGCACTCCTTCCCAAGATCTGGCTCTGCAGTCTTCTGAACTTTCTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTCCTTCCCAAGATCTGGCTCTGCAGTCTTCTGAACTTTCTTCTG  450

seq1  CAGAGTTCCCGAGCTTTGGAAGGGTGACAGAGCTGAGCACTCCACAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCCCGAGCTTTGGAAGGGTGACAGAGCTGAGCACTCCACAGTCA  500

seq1  CTATTATCATCTCTGTGGCCCATTAGAAGTCTGCTTTCAACGTCAGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATCATCTCTGTGGCCCATTAGAAGTCTGCTTTCAACGTCAGGGGG  550

seq1  CAGTGGTACTGAGGGCTCTAGTTTGTTCCTGAATTC  586
      ||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTACTGAGGGCTCTAGTTTGTTCCTGAATTC  586