BAC Information

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BAC

Clone NameB6Ng01-134D17
ChromosomeX (Build37)6 (Build37)
Map Location 43,430,515 - 43,431,06114,636,682 - 14,637,881
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1110059M19Rik, LOC100040038, EG385346
Downstream geneLOC100040075, Actrt1, EG245405, LOC665632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134D17.bB6Ng01-134D17.g
ACCDH934582DH934583
length9451,191
definitionDH934582|Mus musculus domesticus DNA, BAC clone: B6Ng01-134D17, 5' end.DH934583|Mus musculus domesticus DNA, BAC clone: B6Ng01-134D17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,430,515 - 43,431,061)(14,636,682 - 14,637,881)
sequence
gaattctttgtttagctctgtactctacagaacagtaatgataaaaactg
tatggtattgatacagaagcaggcagaaaaatcaaaggaatagaattgaa
gacccagaaatgaacccacacacctgtagtcacttcatctttgacaaaag
agtgaaaaccatccagttaaaaacaaagagcattttcaacaaaatttcaa
aaatttcaaaatgccagcactcagaactgaatcttagtagtaattttttg
atgataggataattctaaaatttaaatggaattgtaaagttccaaagata
aattgaaggatatgcttgagacattcttgacaatatatgaagatatcaaa
atcccaaatatttggaattttatacttaagaaaaaacattgaaaaatgat
gtagcattattgaatgggccccattagcacatatatttgaatgcttagtc
atcgggaaatgcaactccttgacaggattagaaggtgtggccttgttgga
ggaagtgtgtcacttgggtgggctttgaggtttctttttttaaaaaatta
ttagatattttcttcatttacatttcaaataatattccctttcctagttt
ctgctccaaaagtccccataccttccccctgccctgctccccaacccacc
cactcctgcctcctggccctggcatttccctgtactgggggacacatgct
ccactatgttcatagcagcctaatttataatagccagaagctggaaagag
cccaaatgtccctcatcagaggaatggatacagaaaatgtggttcattta
cacaatggaatactactcagctattaataacaatgaatttatgaaatact
ttggcaaatggatgtatctggaggatatcatcctgagtgaggaattcaag
cacaaatgcactcactgataagtagatgttaccccagaaacatag
gaattcattactcttggttgtccaaactttacaaataaggaaactgagac
cacagaatgataagtgctgtgatccagatcataccattccaaatagatct
gagatcacacaatcagcctggttctaatgttttaatcagtatggtctcta
ttgaggtgcttataatcaataagagataagccattgttccaagccaaatg
tattattttcattttttatgggtttagaaatgaatcctcagatgcttttc
cattcattaaaaggctgattgcccaacttccccagcggcactctctgtag
cttagaaccttgtaacaaaaggagtattcttaattatttctcttgtttga
acctgaaagactcccatcatgtcagttactcaaaaccccattaaataacc
atgaacaattgagtagtgtaaaaattaaacaggtaaattaaaagtagtca
atacaggaacaacttttgagtaaaatttcattctagatgaaacacataaa
tattgtgctaggtcattaataatttattattttatagaatattaatttta
attgccttagtctcttacttttataattcagtcttgagttctgaatttag
ccatgtaaatatttttataaggaccaaaaattgaggttagagactttgat
acagagcattctgataacaatataatatgtctaagggcatatgcttcaaa
ttatattcagcttgttaatattttcaacagatgttatagcatcataaaat
actacaataaattttgactacatgatttctattggaaaattatgaattat
acaagcttataaagtaaagcaatatttaaatcatctgtttccattcatga
aaacaattagaatttgtcaacttctaccttaatgaaggaaaacacatgaa
taagcatttttggagcttcagtcttgatcatgttatccttatacacatat
cagaaatggagaggagcaactgattcctcactactttctcgtgtaaaggc
tgggcccattgaactgaagttcatttatttttcactaatgtttattgata
cccacaatacaaggaactacattaggtacttctataataggcacaagaac
ttgggcatgaataaaggtttccacacattcgaagacattgtctggccctt
gagttattggattgcacctggtatggaactgactccagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_43430515_43431061
seq2: B6Ng01-134D17.b_304_835

seq1  AATTCTAGAAAGGCAAATTTATAATATTTGTAATTGTAAAGTTCC-AAGT  49
      |||||||       ||||||| |     || |||||||||||||| ||| 
seq2  AATTCTA-------AAATTTAAA-----TGGAATTGTAAAGTTCCAAAGA  38

seq1  TACCTTGGA----AT-----AAAAATTCTAAACATTGTGAGAGGCAAATC  90
      ||  ||| |    ||     | | |||||  ||| | |  || | | |||
seq2  TAAATTGAAGGATATGCTTGAGACATTCTTGACAATATATGAAG-ATATC  87

seq1  AAA--------------CAATCAGAGCCT------AAAGCATT----ACT  116
      |||               |||   |  ||      ||| ||||    | |
seq2  AAAATCCCAAATATTTGGAATTTTATACTTAAGAAAAAACATTGAAAAAT  137

seq1  GGTGTACAATACAGTGTATCAAGAC--TTTCCCCATGT-TCTGA---GAA  160
      | ||||  ||  | || ||     |  ||  | ||| | | |||      
seq2  GATGTAGCAT-TATTGAATGGGCCCCATTAGCACATATATTTGAATGCTT  186

seq1  AGTCCAAAAGAGAAGTG-AACTCC-------------AAATT----TCTT  192
      ||||  |  | ||| || ||||||             ||  |     |||
seq2  AGTC--ATCGGGAAATGCAACTCCTTGACAGGATTAGAAGGTGTGGCCTT  234

seq1  GCTAAAGTACATGTTTATATT---TGAGTACAGAGAAAGTATATTCTAAA  239
      | |  || |  ||| |   ||   || |    |||    | | || | ||
seq2  GTTGGAGGAAGTGTGTCACTTGGGTGGGCTTTGAG-GTTTCTTTTTTTAA  283

seq1  AACATTCAAAAACATCTCTCTCTCTCTCTCTCTC---TCTCTCTCTCTCT  286
      || |||   | | || | |||   | |   | ||   |     || || |
seq2  AAAATTATTAGATAT-TTTCTTCATTTACATTTCAAATAATATTCCCTTT  332

seq1  CTCTCTCTCT-CTCACACACACACACACACACACACACACACACACACAC  335
      |    | ||| |||         || |    | || ||   | | |   |
seq2  CCTAGTTTCTGCTC---------CAAAAGTCCCCATACCTTCCCCCTGCC  373

seq1  ATAGACACACACACACACACACACAAAGAAAATTGGACATAGTACTACCG  385
       |   | |  || ||| |||                              
seq2  CTGCTCCCCAACCCACCCAC------------------------------  393

seq1  GAGGATCCCGCAATACCTCTCCTGGGCATATATCAAGAAGATGTCCCAAC  435
           ||| ||       ||||||| | |           || ||    |
seq2  -----TCCTGC-------CTCCTGGCCCT--------GGCATTTC----C  419

seq1  CGGTA-TGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATA  484
      | ||| ||  |||||||||||||||||||||||||||||||| |||||||
seq2  CTGTACTGGGGGACACATGCTCCACTATGTTCATAGCAGCCTAATTTATA  469

seq1  ATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGAT  534
      |||||||||||||||||||| |||| ||| |||||| |||||||||||||
seq2  ATAGCCAGAAGCTGGAAAGAGCCCAAATGTCCCTCATCAGAGGAATGGAT  519

seq1  ACAGAAAATGTGG  547
      |||||||||||||
seq2  ACAGAAAATGTGG  532

seq1: chr6_14636682_14637881
seq2: B6Ng01-134D17.g_69_1259

seq1  GAATTCATTACTCTTGGTTGTCCAAACTTTACAAATAAGGAAACTGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACTCTTGGTTGTCCAAACTTTACAAATAAGGAAACTGAGAC  50

seq1  CACAGAATGATAAGTGCTGTGATCCAGATCATACCATTCCAAATAGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATGATAAGTGCTGTGATCCAGATCATACCATTCCAAATAGATCT  100

seq1  GAGATCACACAATCAGCCTGGTTCTAATGTTTTAATCAGTATGGTCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCACACAATCAGCCTGGTTCTAATGTTTTAATCAGTATGGTCTCTA  150

seq1  TTGAGGTGCTTATAATCAATAAGAGATAAGCCATTGTTCCAAGCCAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTGCTTATAATCAATAAGAGATAAGCCATTGTTCCAAGCCAAATG  200

seq1  TATTATTTTCATTTTTTATGGGTTTAGAAATGAATCCTCAGATGCTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTCATTTTTTATGGGTTTAGAAATGAATCCTCAGATGCTTTTC  250

seq1  CATTCATTAAAAGGCTGATTGCCCAACTTCCCCAGCGGCACTCTCTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTAAAAGGCTGATTGCCCAACTTCCCCAGCGGCACTCTCTGTAG  300

seq1  CTTAGAACCTTGTAACAAAAGGAGTATTCTTAATTATTTCTCTTGTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAACCTTGTAACAAAAGGAGTATTCTTAATTATTTCTCTTGTTTGA  350

seq1  ACCTGAAAGACTCCCATCATGTCAGTTACTCAAAACCCCATTAAATAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAGACTCCCATCATGTCAGTTACTCAAAACCCCATTAAATAACC  400

seq1  ATGAACAATTGAGTAGTGTAAAAATTAAACAGGTAAATTAAAAGTAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAATTGAGTAGTGTAAAAATTAAACAGGTAAATTAAAAGTAGTCA  450

seq1  ATACAGGAACAACTTTTGAGTAAAATTTCATTCTAGATGAAACACATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGAACAACTTTTGAGTAAAATTTCATTCTAGATGAAACACATAAA  500

seq1  TATTGTGCTAGGTCATTAATAATTTATTATTTTATAGAATATTAATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGCTAGGTCATTAATAATTTATTATTTTATAGAATATTAATTTTA  550

seq1  ATTGCCTTAGTCTCTTACTTTTATAATTCAGTCTTGAGTTCTGAATTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTTAGTCTCTTACTTTTATAATTCAGTCTTGAGTTCTGAATTTAG  600

seq1  CCATGTAAATATTTTTATAAGGACCAAAAATTGAGGTTAGAGACTTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAAATATTTTTATAAGGACCAAAAATTGAGGTTAGAGACTTTGAT  650

seq1  ACAGAGCATTCTGATAACAATATAATATGTCTAAGGGCATATGCTTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCATTCTGATAACAATATAATATGTCTAAGGGCATATGCTTCAAA  700

seq1  TTATATTCAGCTTGTTAATATTTTCAACAGATGTTATAGCATCATAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCAGCTTGTTAATATTTTCAACAGATGTTATAGCATCATAAAAT  750

seq1  ACTACAATAAATTTTGACTACATGATTTCTATTGGAAAATTATGAATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAATAAATTTTGACTACATGATTTCTATTGGAAAATTATGAATTAT  800

seq1  ACAAGCTTATAAAGTAAAGCAATATTTAAATCATCTGTTTCCATTCATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTTATAAAGTAAAGCAATATTTAAATCATCTGTTTCCATTCATGA  850

seq1  AAACAATTAGAATTTGTCAACTTCTACCTTAATGAAGGAAAACACATGAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAACAATTAGAATTTGTCAACTTCTACCTTAATGAAGGAAAACACATG-A  899

seq1  ATAAGCATTTTTGGAGCTTCAGTCTTGATCATGTTATCCTTATACACATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATTTTTGGAGCTTCAGTCTTGATCATGTTATCCTTATACACATA  949

seq1  TCAGAAATGGAAGAGGAGCAACTGATTCCTCCACTACTTTTCTCCGTGTA  1000
      |||||||||| ||||||||||||||||||| |||||| ||||| ||||| 
seq2  TCAGAAATGG-AGAGGAGCAACTGATTCCT-CACTAC-TTTCT-CGTGT-  994

seq1  AAAGGCTGGGCCCATTGAACTGAAGTTCCATTTATTTTTCACTTAATGTT  1050
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  AAAGGCTGGGCCCATTGAACTGAAGTT-CATTTATTTTTCAC-TAATGTT  1042

seq1  TATTGAATACCCACAATACAAGGGAACTACATTAAGTAC-TCTATAATA-  1098
      ||||| ||||||||||||||| |||||||||||| |||| ||||||||| 
seq2  TATTG-ATACCCACAATACAA-GGAACTACATTAGGTACTTCTATAATAG  1090

seq1  GCACAAG-ACTTGGGCATGATAAAGGGTTTCCA-ACATCCAAAAGCATTG  1146
      ||||||| ||||||||||||  || |||||||| |||| | ||  |||||
seq2  GCACAAGAACTTGGGCATGAATAAAGGTTTCCACACATTCGAAGACATTG  1140

seq1  TCTTG-CTTTGAGTTATGAGATAGGCAACACTGGTATGAAACTGACTCCC  1195
      ||| | | |||||||||  |||  |||   |||||||| |||||||| ||
seq2  TCTGGCCCTTGAGTTATTGGAT-TGCA--CCTGGTATGGAACTGACT-CC  1186

seq1  AGCAT  1200
      |||||
seq2  AGCAT  1191