BAC Information

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BAC

Clone NameB6Ng01-134M12
Chromosome6 (Build37)
Map Location 94,042,660 - 94,171,974
singlet/doubletdoublet
Overlap geneMagi1
Upstream geneLOC384461, LOC100043253, LOC665831
Downstream geneLOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134M12.bB6Ng01-134M12.g
ACCDH934992DH934993
length1,1101,055
definitionDH934992|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M12, 5' end.DH934993|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,042,660 - 94,043,775)(94,170,914 - 94,171,974)
sequence
gaattcctatcccacatcctggtgatccgctctaacagctgggataattg
agcaccctgggacctaggcttctttctggacacttcagcaatccagatgg
agtaggtgatttaagacctttacaaccaggtaccaactgtcaaccattcc
aaggggacgctgaataagtaggtgagagggttttacacaaaccttcacct
agcagaggaattcagctctcagacacagcttgcacacagtcccctgactg
gaggcagcaaaggtagatataagtgagaaggaagaaacaatgactgggaa
gaacacataatttaaatgataagtctttcaaaaacactttatccagggct
tctgctccttgctagcaacctacaaaaatcacagaagctgataacagaaa
aaccaatacaaacccaaggccaggggctccctttggttggcaacagtcac
gtgaccagtgtcacgtccttgttaacaaaggagaggccagaggctgggga
agagagccagcctcctagaggaaaagtggaaccccacagccaccataggg
gactagggatattacacaagaacactttgtctgacacccagttcaacttc
tcaggtgtgtaacatggcggccttagcacagggtttcttgctgtgtgagt
tcacaatcagtctcaaaatcccatgggtccccttcctttgccctctgcag
gcagcacctgaaatgccccgcccccaccccacccccaccccgccccaccc
ccgactttcggttcctgcacacaacctcacccttttcactcgcctccctc
ttaaggcctgtcttgctagataagttttctctgccaagagaaaaggtctc
tattacttgttctctatcatgtaccttcattcaggtctctcctcttttca
ccagtatcttatgaacacaatacaggagaaacctgaacagcacgtagatt
tcatttgtcaaatgtcttccttcactggtaagaggcctacctagacaagc
cactgcagctacctgaatgcatccgcacccaactctttctcttttgtttg
atctgggctcttgttgggctggggttcggattgtgttgagaataatcttt
cctgtgtaga
gaattctggtagcgcagtgctttcagccgtcctcatgacacagcccttta
atacagttcctcatgttgcggtgaccccacccatgcacttattttccatg
ccacttcatagctgtaatttttgccactgttatgacttgtaatgtaaatg
tctgtgttttctgatggtcttaggtgacacttgtaaaagggtcatttgac
ccccccacccccaaagtggtcacaagaggttgaaattaagtcattgagaa
ttcatgtagtagttcctcacagctcactggctagctagtcacactcactt
gttccaggccaactaagaaaccctgtctgaaaaaagcaaggtggctgact
cctgaggagcagtttccagagttgtatccacttgaacacgcccacccacg
cacccacccacccactgttctctagaaacatcttaaataaggaaagaaat
tcatgccaaataacgaggccaaaggttagtactgtgagggaagatctcag
gctccagcagtccacttgctacttaagacataacttcagtccaagcctga
gtgacacttggttacagacgaagatgcgatgctttttgtgatgtagcagc
tgtcttggattcagatgttttggggcatcctggcagggtgttttctctta
cctcatttcttatataaagtatggtgctccaggaagggttagaagtgaca
aggctgtcttttgggcctttccgctcttttatgtctagcctatgcttcat
aaagaagattttggaaattggtctctgggtactaatataattgctgagtc
aagccctgatttttcagaatgaagattattcttgccaagagttgcaagtt
ggacagcaagaacatttcagttgtttttgggtgaggcagaaatttcaagt
tgacatttctcatggatattgctgtttttaaatagatacttcctttccaa
accattatgatgagtgtataagtgatgcaactatgcaaataccgtgcctt
ctcatgcttgtggtttgtcacttgttcagacctgggatggagagttattc
acgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_94042660_94043775
seq2: B6Ng01-134M12.b_47_1156

seq1  GAATTCCTATCCCACATCCTGGTGATCCGCTCTAACAGCTGGGATAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCCCACATCCTGGTGATCCGCTCTAACAGCTGGGATAATTG  50

seq1  AGCACCCTGGGACCTAGGCTTCTTTCTGGACACTTCAGCAATCCAGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCTGGGACCTAGGCTTCTTTCTGGACACTTCAGCAATCCAGATGG  100

seq1  AGTAGGTGATTTAAGACCTTTACAACCAGGTACCAACTGTCAACCATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGATTTAAGACCTTTACAACCAGGTACCAACTGTCAACCATTCC  150

seq1  AAGGGGACGCTGAATAAGTAGGTGAGAGGGTTTTACACAAACCTTCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACGCTGAATAAGTAGGTGAGAGGGTTTTACACAAACCTTCACCT  200

seq1  AGCAGAGGAATTCAGCTCTCAGACACAGCTTGCACACAGTCCCCTGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGAATTCAGCTCTCAGACACAGCTTGCACACAGTCCCCTGACTG  250

seq1  GAGGCAGCAAAGGTAGATATAAGTGAGAAGGAAGAAACAATGACTGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCAAAGGTAGATATAAGTGAGAAGGAAGAAACAATGACTGGGAA  300

seq1  GAACACATAATTTAAATGATAAGTCTTTCAAAAACACTTTATCCAGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACATAATTTAAATGATAAGTCTTTCAAAAACACTTTATCCAGGGCT  350

seq1  TCTGCTCCTTGCTAGCAACCTACAAAAATCACAGAAGCTGATAACAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCTTGCTAGCAACCTACAAAAATCACAGAAGCTGATAACAGAAA  400

seq1  AACCAATACAAACCCAAGGCCAGGGGCTCCCTTTGGTTGGCAACAGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATACAAACCCAAGGCCAGGGGCTCCCTTTGGTTGGCAACAGTCAC  450

seq1  GTGACCAGTGTCACGTCCTTGTTAACAAAGGAGAGGCCAGAGGCTGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAGTGTCACGTCCTTGTTAACAAAGGAGAGGCCAGAGGCTGGGGA  500

seq1  AGAGAGCCAGCCTCCTAGAGGAAAAGTGGAACCCCACAGCCACCATAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCAGCCTCCTAGAGGAAAAGTGGAACCCCACAGCCACCATAGGG  550

seq1  GACTAGGGATATTACACAAGAACACTTTGTCTGACACCCAGTTCAACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGGATATTACACAAGAACACTTTGTCTGACACCCAGTTCAACTTC  600

seq1  TCAGGTGTGTAACATGGCGGCCTTAGCACAGGGTTTCTTGCTGTGTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTGTAACATGGCGGCCTTAGCACAGGGTTTCTTGCTGTGTGAGT  650

seq1  TCACAATCAGTCTCAAAATCCCATGGGTCCCCTTCCTTTGCCCTCTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCAGTCTCAAAATCCCATGGGTCCCCTTCCTTTGCCCTCTGCAG  700

seq1  GCAGCACCTGAAATGCCCCGCCCCCACCCCACCCCCACCCCGCCCCACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACCTGAAATGCCCCGCCCCCACCCCACCCCCACCCCGCCCCACCC  750

seq1  CCGAC-TTCGGTTCCTGCACACAACCTCACCCTTTTCACTCGCCTCCCTC  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTTTCGGTTCCTGCACACAACCTCACCCTTTTCACTCGCCTCCCTC  800

seq1  TTAAGGCCTGTCTTGCTAGATAAGTTTTCTCTGCCAAGAGAAAAGGTCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCCTGTCTTGCTAGATAAGTTTTCTCTGCCAAGAGAAAAGGTCTC  850

seq1  TATTACTTGTTCTCTATCATGTACCTTCATTTCAGGGTCTCTCCTCTTTT  899
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  TATTACTTGTTCTCTATCATGTACCTTCA-TTCA-GGTCTCTCCTCTTTT  898

seq1  CACCAGTATCTTATGAACACAATAACAGGAGAAACCTGAACAGCACGTAG  949
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CACCAGTATCTTATGAACACAAT-ACAGGAGAAACCTGAACAGCACGTAG  947

seq1  ATTTCATTTGTCAAATGTCTTCC-TCACTGGTAAGAGGCCTACCTAGACA  998
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  ATTTCATTTGTCAAATGTCTTCCTTCACTGGTAAGAGGCCTACCTAGAC-  996

seq1  AAGCCACTGCAGCTACCTGAATGCATCCGCACACCATCTCTTTCTCTTTT  1048
      |||||||||||||||||||||||||||||||| ||| |||||||||  ||
seq2  AAGCCACTGCAGCTACCTGAATGCATCCGCAC-CCAACTCTTTCTC--TT  1043

seq1  TTGTTTGTTCTGGGCTCTTGTTGTGCTGGTGTTCTGTTTTGTTTGGAGAT  1098
      ||||||| ||||||||||||||| ||||| |||| |  |||| | |||| 
seq2  TTGTTTGATCTGGGCTCTTGTTGGGCTGGGGTTC-GGATTGTGTTGAGAA  1092

seq1  AAGTTCTTCCTGTGTAGA  1116
       | |  ||||||||||||
seq2  TAATCTTTCCTGTGTAGA  1110

seq1: chr6_94170914_94171974
seq2: B6Ng01-134M12.g_68_1122 (reverse)

seq1  ATCGTGATAAACTCTCCATCCCAGGTTCTGA--CAGTGACAAACCAACAA  48
      |||||||  |||||||||||||||| |||||   ||||||||||| ||||
seq2  ATCGTGAATAACTCTCCATCCCAGG-TCTGAACAAGTGACAAACC-ACAA  48

seq1  GCATGAG-AGGCACGGTTATTTTGCATAGTTGCATCAACTTATACAACTC  97
      ||||||| |||||||||   |||||||||||||||| |||||||| ||||
seq2  GCATGAGAAGGCACGGT--ATTTGCATAGTTGCATC-ACTTATAC-ACTC  94

seq1  ATTCATAATGGTTTGGAAAGGAAGTATCTATTTAAAAAACAGCAATTATC  147
      | ||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  A-TCATAATGGTTTGGAAAGGAAGTATCTATTT-AAAAACAGCAA-TATC  141

seq1  CATGAGAAATGTCAACTTGAATTTTCTGCCTCACCCAAAAACAACTGAAA  197
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATGAGAAATGTCAACTTGAAATTTCTGCCTCACCCAAAAACAACTGAAA  191

seq1  TGTTCTTGCTGTCCAACTTGCAACTCTTGGCAAGAATAATCTTCATTCTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGCTGTCCAACTTGCAACTCTTGGCAAGAATAATCTTCATTCTG  241

seq1  AAAAATCAGGGCTTGACTCAGCAATTATATTAGTACCCAGAGACCAATTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAGGGCTTGACTCAGCAATTATATTAGTACCCAGAGACCAATTT  291

seq1  CCAAAATCTTCTTTATGAAGCATAGGCTAGACATAAAAGAGCGGAAAGGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATCTTCTTTATGAAGCATAGGCTAGACATAAAAGAGCGGAAAGGC  341

seq1  CCAAAAGACAGCCTTGTCACTTCTAACCCTTCCTGGAGCACCATACTTTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGACAGCCTTGTCACTTCTAACCCTTCCTGGAGCACCATACTTTA  391

seq1  TATAAGAAATGAGGTAAGAGAAAACACCCTGCCAGGATGCCCCAAAACAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAAATGAGGTAAGAGAAAACACCCTGCCAGGATGCCCCAAAACAT  441

seq1  CTGAATCCAAGACAGCTGCTACATCACAAAAAGCATCGCATCTTCGTCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCCAAGACAGCTGCTACATCACAAAAAGCATCGCATCTTCGTCTG  491

seq1  TAACCAAGTGTCACTCAGGCTTGGACTGAAGTTATGTCTTAAGTAGCAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAGTGTCACTCAGGCTTGGACTGAAGTTATGTCTTAAGTAGCAAG  541

seq1  TGGACTGCTGGAGCCTGAGATCTTCCCTCACAGTACTAACCTTTGGCCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGCTGGAGCCTGAGATCTTCCCTCACAGTACTAACCTTTGGCCTC  591

seq1  GTTATTTGGCATGAATTTCTTTCCTTATTTAAGATGTTTCTAGAGAACAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGGCATGAATTTCTTTCCTTATTTAAGATGTTTCTAGAGAACAG  641

seq1  TGGGTGGGTGGGTGCGTGGGTGGGCGTGTTCAAGTGGATACAACTCTGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGTGGGTGCGTGGGTGGGCGTGTTCAAGTGGATACAACTCTGGA  691

seq1  AACTGCTCCTCAGGAGTCAGCCACCTTGCTTTTTTCAGACAGGGTTTCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTCCTCAGGAGTCAGCCACCTTGCTTTTTTCAGACAGGGTTTCTT  741

seq1  AGTTGGCCTGGAACAAGTGAGTGTGACTAGCTAGCCAGTGAGCTGTGAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCCTGGAACAAGTGAGTGTGACTAGCTAGCCAGTGAGCTGTGAGG  791

seq1  AACTACTACATGAATTCTCAATGACTTAATTTCAACCTCTTGTGACCACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTACATGAATTCTCAATGACTTAATTTCAACCTCTTGTGACCACT  841

seq1  TTGGGGGTGGGGGGGTCAAATGACCCTTTTACAAGTGTCACCTAAGACCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGTGGGGGGGTCAAATGACCCTTTTACAAGTGTCACCTAAGACCA  891

seq1  TCAGAAAACACAGACATTTACATTACAAGTCATAACAGTGGCAAAAATTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAACACAGACATTTACATTACAAGTCATAACAGTGGCAAAAATTA  941

seq1  CAGCTATGAAGTGGCATGGAAAATAAGTGCATGGGTGGGGTCACCGCAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATGAAGTGGCATGGAAAATAAGTGCATGGGTGGGGTCACCGCAAC  991

seq1  ATGAGGAACTGTATTAAAGGGCTGTGTCATGAGGACGGCTGAAAGCACTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAACTGTATTAAAGGGCTGTGTCATGAGGACGGCTGAAAGCACTG  1041

seq1  CGCTACCAGAATTC  1061
      ||||||||||||||
seq2  CGCTACCAGAATTC  1055