BAC Information

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BAC

Clone NameB6Ng01-134N02
Chromosome6 (Build37)
Map Location 8,127,809 - 8,267,891
singlet/doubletdoublet
Overlap geneCol28a1, BC020002, Rpa3, LOC100036521
Upstream geneEG667500, Tac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661
Downstream geneLOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134N02.bB6Ng01-134N02.g
ACCDH935019DH935020
length1,0421,070
definitionDH935019|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N02, 5' end.DH935020|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,266,845 - 8,267,891)(8,127,809 - 8,128,902)
sequence
gaattcaagcataatattttagtatattttccttctaccaatttttatat
gtgaattaaatgtaatgaaaacacttttagaatagtaactggataaaaat
acaaaggagatttgatgattaaactttagtgaaaatggctgagagtttaa
ctagaaacataaattttatacaaaaaagtgcctttttatataacttttga
catgtcaataagcatttactaataaatatattacgtaccagagcccgttt
tatacaacagagatggttcaagacagtattagtttagtgacaaaattcct
gataatttcatattttaatttaactaaatcaaccaatcacattagaagca
cgatgggaaagagccacagaaactcaatcacattatctatttacctaaaa
ctatatataatacgtgcaagtctatgtttacctatagagctgaaaaacat
cccaactagaaaccagtcaggatgcaggcaagggaccaaacagtatccag
tcccaactgatacagctacaacacaacagcacctaaggctcagggaccaa
agtaggaaaggagacagcaaacctagaagagccacaagaacaagaagttt
gctgtgagatttttttctcctagatatatcagagaaggtacactaaggaa
gtctcatcaacatggctgtctaagactagaacaaggataacaccggcaac
accaagttcataggcttcaactctagacaactaaggatgatgaggatggg
agagagtctcccccagcagaaatcccccagaaccgttatccaagatcaaa
gagtcagtcctgaaattgtatacatataagtaaaatacagactgagcagg
ttgtatttatgtaggaatacacacacacacacacacacacacacacacac
acccacacaccccgaaatacaggctatgcatttaagatggttggtacatg
aagaatggttggagaaaaggaaatgagtaggaggaaatgatgtattatac
tctatttaaaacatattttaaaaccccctcaagggatacatc

gaattcaggtgactgcatgtttgttatattcatttttactataactgatg
cttagcaaagccaactctttgggtcacacagaaccactacgttttcagtc
ttgctgtgatgtgcacacagcgtcagtgaatcaagtcaagttagaataaa
attcttcctcagctttccatagctcctttctcttttcttttctcttttct
cttttctcctttctcttttctcttctcttttctcttttctcttttctctc
tcctcttttctcttttctcttttctcttttctcttttctcctttctcttt
tctcttctcttttctctcttctcttttctcttttctcttttctcttgctt
tggaaagtttatcttcatcaggttccacagtggaactgcatatctaatga
ataaaaattaatttgactacaaaacccactaggtttgcttaaaagagact
tccaagcaaaatggggaaagatctgaagtcagaggcctacccctttaacc
caactatttttttctatgtaaacaatgaaaactctaattctctattaaaa
ttctcagtcatctgtatcagttcaatatgcccagctgcacacacagtgat
gtttaaatccacagaatttcctgacaaaaggagactgatatgttgctagc
tcaggatacccaagggaacaggaacaaaaggtttatttagaattgacaat
cggcgtggtttccgagtgcttgcctccttcggctgcattaactccacaag
gtctggaaaaggaatcacattttcctccttttggcaccttgccttcagaa
aatgtgaactggaaattcacgaccatgatttttccagactcttcaatcca
gggtgggaataatacatgcaacggcagtgatgggtgagctgggagacgga
cttctttcagacagcagatgataaatcccacaagagcaaactgtttgctg
agatacgctactgctgcttcagccactgtttctctcaaatagcagcagca
gagcttattaacgactcacttcttgtggagcacctggttggccatgtgct
ggagcaattgtctaatgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8266845_8267891
seq2: B6Ng01-134N02.b_47_1088 (reverse)

seq1  GATGTATCCCCTTGTGGGGTTTTTAAAATATGTTTTTAATTAGAGTATAA  50
      ||||||| |||||| |||| |||||||||||| |||||| ||||||||||
seq2  GATGTAT-CCCTTGAGGGGGTTTTAAAATATG-TTTTAAATAGAGTATAA  48

seq1  TTACATCATTTCCTCCTACTCATTTTCCTTTTCCTCCAACCATTC-TCAT  99
       ||||||||||||||||||||| ||||||||| |||||||||||| ||||
seq2  -TACATCATTTCCTCCTACTCA-TTTCCTTTT-CTCCAACCATTCTTCAT  95

seq1  GTACCAACCATCTTAAATGCATAGCCTGTATTTCGTGTGTGTGTGTGTGT  149
      ||||||||||||||||||||||||||||||||||| | ||||||| ||||
seq2  GTACCAACCATCTTAAATGCATAGCCTGTATTTCG-GGGTGTGTGGGTGT  144

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTCCTACATAAATACAACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTCCTACATAAATACAACC  194

seq1  TGCTCAGTCTGTATTTTACTTATATGTATACAATTTCAGGACTGACTCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTCTGTATTTTACTTATATGTATACAATTTCAGGACTGACTCTT  244

seq1  TGATCTTGGATAACGGTTCTGGGGGATTTCTGCTGGGGGAGACTCTCTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTGGATAACGGTTCTGGGGGATTTCTGCTGGGGGAGACTCTCTCC  294

seq1  CATCCTCATCATCCTTAGTTGTCTAGAGTTGAAGCCTATGAACTTGGTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCATCATCCTTAGTTGTCTAGAGTTGAAGCCTATGAACTTGGTGT  344

seq1  TGCCGGTGTTATCCTTGTTCTAGTCTTAGACAGCCATGTTGATGAGACTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGTGTTATCCTTGTTCTAGTCTTAGACAGCCATGTTGATGAGACTT  394

seq1  CCTTAGTGTACCTTCTCTGATATATCTAGGAGAAAAAAATCTCACAGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTGTACCTTCTCTGATATATCTAGGAGAAAAAAATCTCACAGCAA  444

seq1  ACTTCTTGTTCTTGTGGCTCTTCTAGGTTTGCTGTCTCCTTTCCTACTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGTTCTTGTGGCTCTTCTAGGTTTGCTGTCTCCTTTCCTACTTT  494

seq1  GGTCCCTGAGCCTTAGGTGCTGTTGTGTTGTAGCTGTATCAGTTGGGACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTGAGCCTTAGGTGCTGTTGTGTTGTAGCTGTATCAGTTGGGACT  544

seq1  GGATACTGTTTGGTCCCTTGCCTGCATCCTGACTGGTTTCTAGTTGGGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTGTTTGGTCCCTTGCCTGCATCCTGACTGGTTTCTAGTTGGGAT  594

seq1  GTTTTTCAGCTCTATAGGTAAACATAGACTTGCACGTATTATATATAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAGCTCTATAGGTAAACATAGACTTGCACGTATTATATATAGTT  644

seq1  TTAGGTAAATAGATAATGTGATTGAGTTTCTGTGGCTCTTTCCCATCGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAAATAGATAATGTGATTGAGTTTCTGTGGCTCTTTCCCATCGTG  694

seq1  CTTCTAATGTGATTGGTTGATTTAGTTAAATTAAAATATGAAATTATCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAATGTGATTGGTTGATTTAGTTAAATTAAAATATGAAATTATCAG  744

seq1  GAATTTTGTCACTAAACTAATACTGTCTTGAACCATCTCTGTTGTATAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGTCACTAAACTAATACTGTCTTGAACCATCTCTGTTGTATAAA  794

seq1  ACGGGCTCTGGTACGTAATATATTTATTAGTAAATGCTTATTGACATGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCTCTGGTACGTAATATATTTATTAGTAAATGCTTATTGACATGTC  844

seq1  AAAAGTTATATAAAAAGGCACTTTTTTGTATAAAATTTATGTTTCTAGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTATATAAAAAGGCACTTTTTTGTATAAAATTTATGTTTCTAGTT  894

seq1  AAACTCTCAGCCATTTTCACTAAAGTTTAATCATCAAATCTCCTTTGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCAGCCATTTTCACTAAAGTTTAATCATCAAATCTCCTTTGTAT  944

seq1  TTTTATCCAGTTACTATTCTAAAAGTGTTTTCATTACATTTAATTCACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCAGTTACTATTCTAAAAGTGTTTTCATTACATTTAATTCACAT  994

seq1  ATAAAAATTGGTAGAAGGAAAATATACTAAAATATTATGCTTGAATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTGGTAGAAGGAAAATATACTAAAATATTATGCTTGAATTC  1042


seq1: chr6_8127809_8128902
seq2: B6Ng01-134N02.g_69_1138

seq1  GAATTCAGGTGACTGCATGTTTGTTATATTCATTTTTACTATAACTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGACTGCATGTTTGTTATATTCATTTTTACTATAACTGATG  50

seq1  CTTAGCAAAGCCAACTCTTTGGGTCACACAGAACCACTACGTTTTCAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAAAGCCAACTCTTTGGGTCACACAGAACCACTACGTTTTCAGTC  100

seq1  TTGCTGTGATGTGCACACAGCGTCAGTGAATCAAGTCAAGTTAGAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGATGTGCACACAGCGTCAGTGAATCAAGTCAAGTTAGAATAAA  150

seq1  ATTCTTCCTCAGCTTTCCATAGCTCCTTTCTCTTTTCTTTTCTCTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCTCAGCTTTCCATAGCTCCTTTCTCTTTTCTTTTCTCTTTTCT  200

seq1  CTTTTCTCCTTTCTCTTTTCTCTTCTCTTTTCTCTTTTCTCTTTTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCCTTTCTCTTTTCTCTTCTCTTTTCTCTTTTCTCTTTTCTCTC  250

seq1  TCCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCCTTTCTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCCTTTCTCTTT  300

seq1  TCTCTTCTCTTTTCTCTCTTCTCTTTTCTCTTTTCTCTTTTCTCTTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCTTTTCTCTCTTCTCTTTTCTCTTTTCTCTTTTCTCTTGCTT  350

seq1  TGGAAAGTTTATCTTCATCAGGTTCCACAGTGGAACTGCATATCTAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTTTATCTTCATCAGGTTCCACAGTGGAACTGCATATCTAATGA  400

seq1  ATAAAAATTAATTTGACTACAAAACCCACTAGGTTTGCTTAAAAGAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTAATTTGACTACAAAACCCACTAGGTTTGCTTAAAAGAGACT  450

seq1  TCCAAGCAAAATGGGGAAAGATCTGAAGTCAGAGGCCTACCCCTTTAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCAAAATGGGGAAAGATCTGAAGTCAGAGGCCTACCCCTTTAACC  500

seq1  CAACTATTTTTTTCTATGTAAACAATGAAAACTCTAATTCTCTATTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATTTTTTTCTATGTAAACAATGAAAACTCTAATTCTCTATTAAAA  550

seq1  TTCTCAGTCATCTGTATCAGTTCAATATGCCCAGCTGCACACACAGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTCATCTGTATCAGTTCAATATGCCCAGCTGCACACACAGTGAT  600

seq1  GTTTAAATCCACAGAATTTCCTGACAAAAGGAGACTGATATGTTGCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATCCACAGAATTTCCTGACAAAAGGAGACTGATATGTTGCTAGC  650

seq1  TCAGGATACCCAAGGGAACAGGAACAAAAGGTTTATTTAGAATTGACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATACCCAAGGGAACAGGAACAAAAGGTTTATTTAGAATTGACAAT  700

seq1  CGGCGTGGTTTCCGAGTGCTTGCCTCCTTCGGCTGCATTAACTCCACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGTGGTTTCCGAGTGCTTGCCTCCTTCGGCTGCATTAACTCCACAAG  750

seq1  GTCTGGAAAAGGAATCACATTTTCCTCCTTTTGGCACCTTGCCTTCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAAAAGGAATCACATTTTCCTCCTTTTGGCACCTTGCCTTCAGAA  800

seq1  AATGTGAACTGGAAATTCACGACCATGATTTTTCCAGACTCTTCAATCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAACTGGAAATTCACGACCATGATTTTTCCAGACTCTTCAATCCA  850

seq1  GGGTGGGAATAATACATGCAACGGCAGTGATGGGTGAGCTGGGAGACGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGAATAATACATGCAACGGCAGTGATGGGTGAGCTGGGAGACGGA  900

seq1  CTTCTTTCAGACAGGCAGATGGATTAAATCCCACAAAGAAGCAAAACTGT  950
      ||||||||||||| |||||||   ||||||||||||   ||| |||||||
seq2  CTTCTTTCAGACA-GCAGATG--ATAAATCCCACAA--GAGC-AAACTGT  944

seq1  TTGGCTGGAGATAACGCTACTGCTGGCTTCAGGCCACTGTTTCTTCCTCA  1000
      || ||| ||||| ||||||||||| |||||| ||||||||||||  ||||
seq2  TT-GCT-GAGAT-ACGCTACTGCT-GCTTCA-GCCACTGTTTCT--CTCA  987

seq1  AATAGCAGGCAGCAGGAAGCTTATTAACAGAACTTCACTTCTGTGTGAAG  1050
      ||||||| |||||||  ||||||||||| ||   |||||||| |||| ||
seq2  AATAGCA-GCAGCAG--AGCTTATTAAC-GA--CTCACTTCT-TGTGGAG  1030

seq1  CACCTGTGTTGGCGCATGTGCTGAGAGCAATTGTCTAAATGTCA  1094
      |||||| |||||| ||||||||| |||||||||||| |||||||
seq2  CACCTG-GTTGGC-CATGTGCTG-GAGCAATTGTCT-AATGTCA  1070


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