BAC Information

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BAC

Clone NameB6Ng01-135B06
Chromosome6 (Build37)
Map Location 57,086,126 - 57,087,221
singlet/doubletsinglet
Overlap genenone
Upstream genePde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1
Downstream geneV1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135B06.bB6Ng01-135B06.g
ACCDH935212DH935213
length1,0821,125
definitionDH935212|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B06, 5' end.DH935213|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaattaacctatatctttaacttttgaggttccagactgttca
tcatagcctatatttctagatgccctctatgtatcttctgtatctataga
ctattagatattgtaaatacattcatggtcatacccatacagaaagcaca
ctttctgtgcctggattgcacctgagtctaatgtcttagaaatacaatcc
tagtgatttaaattccctcattttataatgatgagcacagaatattaacc
atatatgtccaactgaacaaaagtatgtcagtctgagggaaaaaaatcac
aaaagatatccaaaagtacaggtgagtcagtcttatattctatcatttta
ctataccctcttttgcaactatccatgttttttaaccataattctaatgg
aatctcaatgataattcatgattataccactattataattagaaaagaac
aatctaagttcattttttccttacatcctcataagttagaattatgtttt
atcgtatcttgcatcctcaaaatctagaatggaagacataaatgcagtgg
gagatcattagtggactttccacatcctattaattggataaccattattg
gtataaatggctagatggcttccaggtcattttccacctcatttaagcca
tttgtgaactccaattcagaattaaaaagctgactcccagctatcaagac
aaacactattttcctttatattttgtgggagaggaaaataaatcatgaac
agtatgatcccttagggctttttaagccattcattttgttattttaccta
tcttctccttcgctatttatctccttccccttctataagaactcaagcat
tttccctggtttccctctttgatcaattgtgttctactaatcccctttac
cttcatcccaccttctttgcatttacctccctcttccccactaaggaacc
ctccctttcccatttcccgatagatgtgccctgctatttgttctcatgct
cccatcagcaccctatttggtatggtctgtttgctttctgtttcacagtt
attatagcttaataatcatgcgtggaatgtga
gaattcctgatctttccaagactttaatcatgaatgggtgttggatcttt
tcaaatgctttctcgcatctaacgagatgatcatgtggtttttgtctttg
agtttgttgatataatggattacgttgatgtatttccgtatattaaaagc
tccctgcatcactggaataaaacctacttggtcaggatggatgattgctt
taatgtgttcttggattctgttagcaagaattttattgagtatttttgca
ttgatattcataggggaaattggtttgaagttctctgtctttgttggatc
tttctgtggttcaggtatcagagtaattgtggcttcataaaatgagttgg
gtagagtaccttctacttctattttgtggaatagtttgtgcagaactgga
attagatcttctttgaaggtttggtagaactctgcactaaacccatctgg
tcctgggctgttttttggctgggagactattaatgactgcttctaatttt
ttgggaaacatggaactgtttagatcgataacttgatcctgatttaactt
tggtacctggcatctgtctaagaatttgtccatttcgtccaggttttcca
gttttgttgagtataaccttttgtagaaggatctgatgatgttttggatt
tctttcaggatctgttgttatgtctcccttttcatttctgattttgttaa
ttaggattttgtccctgtgccctctagtgggtgtagttaagggtttatct
atcttgttcattttctcaaataccaactcctcgtttggttaattctttga
atagttcttcttgtttccactgggttgattttgcccatgagtttgtttat
tttgtgccgtgaactcctcttgtgtcatttgcttccttttttttctagag
catttagatgtttgtcaagctgctagtgtgtgctctctctagtttctttt
cgaggcatcagaggtatgagtttccctcttagaaatgctttcattgtgtc
ccatagttggctagtgtgcttcatttcataacttaaagtcttaattcttc
ttatcttcctgagcaggatcatgagagagagtgtgtcagttcaccgtgaa
gtgtgcttctcaatttaggtgtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_57086126_57087221
seq2: B6Ng01-135B06.b_48_1129 (reverse)

seq1  TCACATTTCCACGCATGATTATATAGCCTATAATAACTGTGGAAACCAGG  50
      ||||| |||||||||||||||| ||  ||||||||||||| |||||   |
seq2  TCACA-TTCCACGCATGATTAT-TAAGCTATAATAACTGT-GAAAC--AG  45

seq1  AAAGCAAAACAGGACCATTACCAAAATAGGGGTGCTGATGGGAGCAATGA  100
      ||||| ||||| ||||| |||| ||||| |||||||||||||||| ||| 
seq2  AAAGC-AAACA-GACCA-TACC-AAATA-GGGTGCTGATGGGAGC-ATG-  88

seq1  AGAACAAAATAGCAGGGCACATCTAATCGGGAAATGGGAAAGGGAGGGTT  150
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  AGAAC-AAATAGCAGGGCACATCT-ATCGGGAAATGGGAAAGGGAGGGTT  136

seq1  CCTTAGTGGGGAAGAGGGAGGTAAATGCAAAGAAGGTGGGATGAAGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTGGGGAAGAGGGAGGTAAATGCAAAGAAGGTGGGATGAAGGTAA  186

seq1  AGGGGATTAGTAGAACACAATTGATCAAAGAGGGAAACCAGGGAAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATTAGTAGAACACAATTGATCAAAGAGGGAAACCAGGGAAAATGC  236

seq1  TTGAGTTCTTATAGAAGGGGAAGGAGATAAATAGCGAAGGAGAAGATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCTTATAGAAGGGGAAGGAGATAAATAGCGAAGGAGAAGATAGG  286

seq1  TAAAATAACAAAATGAATGGCTTAAAAAGCCCTAAGGGATCATACTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAACAAAATGAATGGCTTAAAAAGCCCTAAGGGATCATACTGTTC  336

seq1  ATGATTTATTTTCCTCTCCCACAAAATATAAAGGAAAATAGTGTTTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTATTTTCCTCTCCCACAAAATATAAAGGAAAATAGTGTTTGTCT  386

seq1  TGATAGCTGGGAGTCAGCTTTTTAATTCTGAATTGGAGTTCACAAATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCTGGGAGTCAGCTTTTTAATTCTGAATTGGAGTTCACAAATGGC  436

seq1  TTAAATGAGGTGGAAAATGACCTGGAAGCCATCTAGCCATTTATACCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAGGTGGAAAATGACCTGGAAGCCATCTAGCCATTTATACCAAT  486

seq1  AATGGTTATCCAATTAATAGGATGTGGAAAGTCCACTAATGATCTCCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTATCCAATTAATAGGATGTGGAAAGTCCACTAATGATCTCCCAC  536

seq1  TGCATTTATGTCTTCCATTCTAGATTTTGAGGATGCAAGATACGATAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTATGTCTTCCATTCTAGATTTTGAGGATGCAAGATACGATAAAA  586

seq1  CATAATTCTAACTTATGAGGATGTAAGGAAAAAATGAACTTAGATTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTCTAACTTATGAGGATGTAAGGAAAAAATGAACTTAGATTGTTC  636

seq1  TTTTCTAATTATAATAGTGGTATAATCATGAATTATCATTGAGATTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATTATAATAGTGGTATAATCATGAATTATCATTGAGATTCCAT  686

seq1  TAGAATTATGGTTAAAAAACATGGATAGTTGCAAAAGAGGGTATAGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTATGGTTAAAAAACATGGATAGTTGCAAAAGAGGGTATAGTAAA  736

seq1  ATGATAGAATATAAGACTGACTCACCTGTACTTTTGGATATCTTTTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGAATATAAGACTGACTCACCTGTACTTTTGGATATCTTTTGTGA  786

seq1  TTTTTTTCCCTCAGACTGACATACTTTTGTTCAGTTGGACATATATGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCCTCAGACTGACATACTTTTGTTCAGTTGGACATATATGGTT  836

seq1  AATATTCTGTGCTCATCATTATAAAATGAGGGAATTTAAATCACTAGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTGTGCTCATCATTATAAAATGAGGGAATTTAAATCACTAGGAT  886

seq1  TGTATTTCTAAGACATTAGACTCAGGTGCAATCCAGGCACAGAAAGTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCTAAGACATTAGACTCAGGTGCAATCCAGGCACAGAAAGTGTG  936

seq1  CTTTCTGTATGGGTATGACCATGAATGTATTTACAATATCTAATAGTCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTATGGGTATGACCATGAATGTATTTACAATATCTAATAGTCTA  986

seq1  TAGATACAGAAGATACATAGAGGGCATCTAGAAATATAGGCTATGATGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACAGAAGATACATAGAGGGCATCTAGAAATATAGGCTATGATGAA  1036

seq1  CAGTCTGGAACATCAAAAGTTAAAGATATAGGTTAATTAAGAATTC  1096
      ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGTCTGGAACCTCAAAAGTTAAAGATATAGGTTAATTAAGAATTC  1082