BAC Information

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BAC

Clone NameB6Ng01-135L08
Chromosome6 (Build37)
Map Location 72,508,516 - 72,674,096
singlet/doubletdoublet
Overlap geneCapg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3
Upstream geneVps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6
Downstream geneKcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135L08.bB6Ng01-135L08.g
ACCDH935678DH935679
length614695
definitionDH935678|Mus musculus domesticus DNA, BAC clone: B6Ng01-135L08, 5' end.DH935679|Mus musculus domesticus DNA, BAC clone: B6Ng01-135L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,673,483 - 72,674,096)(72,508,516 - 72,509,210)
sequence
gaattcttgaacattggaatgggttattttttttttaaatcctattcttg
acatttacaaatgggaaacaaaaataaaacccacacgatgaagtattcat
gagatgtcagcattccagagaccaccggtgctcaaacccggcactgccag
ggaggcacacacagtatgtatccctgcccgccactctgtctctagtggaa
tatcttgtaaatgtggcattggttagggagcttgtagctgagcacacggg
gctcctctcacggtgtcagccagatgcttgtgtgtgctctcaatgggctt
ggctcagggtggcatcccagcacagacgtgtgtgcatcttctcatcgtgt
tttatgtgcatgacagggaaacaggagtggctattccgtgggaaggtagt
agggcttaggctggacccctcaactgagccacttggctcctaggtgacct
tctgtaggccatctagtcctacctaccgaattccgtcaagagccagatga
ctatggggctggtgatgtagctcaggggcagagaaaaatcacctagtttg
tgtgaggccctgggttcatgccatctcaggaggagagtgagagtaggggg
aggggaaaggggga
gaattcacttcttcccctaggggtttgtggcctttggactgcagtgatag
acaagagagagtctttctggagcttgattttttttgtaggggtggggtgg
gagggctcttcctgcctgtttctcagaactgttggtagagacaactgggt
aacccatgattccaggtgaggactgaattgtgtctgtgtcacactgggaa
ctgtctttcctctccaggtctctgatgccactggacagatgaatctgacc
aaggtggctgactccagcccttttgcctctgaactgctaattccagatga
ctgctttgttctggacaacgggctgtgtggcaaaatctacatctggaagg
gtatgtatggctcctctgtgtgagcctgagggcaccgcagctgctctgaa
cccagcgggctcagccatctctgaaaacctcagcccatctctatctcaga
acttcaagggcctgtttagtatacggctgggcccatcccagacattcaga
ttcatctggtctggcttggagcctgaccacctgtatatttaacatgttcc
cagggcttgcctgaggggcgttgagaactctttggcccatgtccaggcct
tcagggctctgcagtgcctgatcttgaggttctttataactataatagaa
ttaaataaaatttaaatagatggtcttaataagcactttatacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_72673483_72674096
seq2: B6Ng01-135L08.b_47_660 (reverse)

seq1  TCCCCCTTTCCCCTCCCCCTACTCTCACTCTCCTCCTGAGATGGCATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTTCCCCTCCCCCTACTCTCACTCTCCTCCTGAGATGGCATGAA  50

seq1  CCCAGGGCCTCACACAAACTAGGTGATTTTTCTCTGCCCCTGAGCTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCCTCACACAAACTAGGTGATTTTTCTCTGCCCCTGAGCTACAT  100

seq1  CACCAGCCCCATAGTCATCTGGCTCTTGACGGAATTCGGTAGGTAGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCCCATAGTCATCTGGCTCTTGACGGAATTCGGTAGGTAGGACT  150

seq1  AGATGGCCTACAGAAGGTCACCTAGGAGCCAAGTGGCTCAGTTGAGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCCTACAGAAGGTCACCTAGGAGCCAAGTGGCTCAGTTGAGGGGT  200

seq1  CCAGCCTAAGCCCTACTACCTTCCCACGGAATAGCCACTCCTGTTTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTAAGCCCTACTACCTTCCCACGGAATAGCCACTCCTGTTTCCCT  250

seq1  GTCATGCACATAAAACACGATGAGAAGATGCACACACGTCTGTGCTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCACATAAAACACGATGAGAAGATGCACACACGTCTGTGCTGGGA  300

seq1  TGCCACCCTGAGCCAAGCCCATTGAGAGCACACACAAGCATCTGGCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCCTGAGCCAAGCCCATTGAGAGCACACACAAGCATCTGGCTGAC  350

seq1  ACCGTGAGAGGAGCCCCGTGTGCTCAGCTACAAGCTCCCTAACCAATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGAGAGGAGCCCCGTGTGCTCAGCTACAAGCTCCCTAACCAATGCC  400

seq1  ACATTTACAAGATATTCCACTAGAGACAGAGTGGCGGGCAGGGATACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACAAGATATTCCACTAGAGACAGAGTGGCGGGCAGGGATACATA  450

seq1  CTGTGTGTGCCTCCCTGGCAGTGCCGGGTTTGAGCACCGGTGGTCTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGCCTCCCTGGCAGTGCCGGGTTTGAGCACCGGTGGTCTCTGG  500

seq1  AATGCTGACATCTCATGAATACTTCATCGTGTGGGTTTTATTTTTGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGACATCTCATGAATACTTCATCGTGTGGGTTTTATTTTTGTTTC  550

seq1  CCATTTGTAAATGTCAAGAATAGGATTTAAAAAAAAAATAACCCATTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTAAATGTCAAGAATAGGATTTAAAAAAAAAATAACCCATTCCA  600

seq1  ATGTTCAAGAATTC  614
      ||||||||||||||
seq2  ATGTTCAAGAATTC  614

seq1: chr6_72508516_72509210
seq2: B6Ng01-135L08.g_70_764

seq1  GAATTCACTTCTTCCCCTAGGGGTTTGTGGCCTTTGGACTGCAGTGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTTCCCCTAGGGGTTTGTGGCCTTTGGACTGCAGTGATAG  50

seq1  ACAAGAGAGAGTCTTTCTGGAGCTTGATTTTTTTTGTAGGGGTGGGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAGAGTCTTTCTGGAGCTTGATTTTTTTTGTAGGGGTGGGGTGG  100

seq1  GAGGGCTCTTCCTGCCTGTTTCTCAGAACTGTTGGTAGAGACAACTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTCTTCCTGCCTGTTTCTCAGAACTGTTGGTAGAGACAACTGGGT  150

seq1  AACCCATGATTCCAGGTGAGGACTGAATTGTGTCTGTGTCACACTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATGATTCCAGGTGAGGACTGAATTGTGTCTGTGTCACACTGGGAA  200

seq1  CTGTCTTTCCTCTCCAGGTCTCTGATGCCACTGGACAGATGAATCTGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTCCTCTCCAGGTCTCTGATGCCACTGGACAGATGAATCTGACC  250

seq1  AAGGTGGCTGACTCCAGCCCTTTTGCCTCTGAACTGCTAATTCCAGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGCTGACTCCAGCCCTTTTGCCTCTGAACTGCTAATTCCAGATGA  300

seq1  CTGCTTTGTTCTGGACAACGGGCTGTGTGGCAAAATCTACATCTGGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGTTCTGGACAACGGGCTGTGTGGCAAAATCTACATCTGGAAGG  350

seq1  GTATGTATGGCTCCTCTGTGTGAGCCTGAGGGCACCGCAGCTGCTCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATGGCTCCTCTGTGTGAGCCTGAGGGCACCGCAGCTGCTCTGAA  400

seq1  CCCAGCGGGCTCAGCCATCTCTGAAAACCTCAGCCCATCTCTATCTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCGGGCTCAGCCATCTCTGAAAACCTCAGCCCATCTCTATCTCAGA  450

seq1  ACTTCAAGGGCCTGTTTAGTATACGGCTGGGCCCATCCCAGACATTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAGGGCCTGTTTAGTATACGGCTGGGCCCATCCCAGACATTCAGA  500

seq1  TTCATCTGGTCTGGCTTGGAGCCTGACCACCTGTATATTTAACATGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTGGTCTGGCTTGGAGCCTGACCACCTGTATATTTAACATGTTCC  550

seq1  CAGGGCTTGCCTGAGGGGCGTTGAGAACTC-TTGGCCCATGTCCAGGCCT  599
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAGGGCTTGCCTGAGGGGCGTTGAGAACTCTTTGGCCCATGTCCAGGCCT  600

seq1  TCAGGGCTCTGCAGTGCCTGATCTTGAGGTTCTTTATTAACTATAATAGA  649
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAGGGCTCTGCAGTGCCTGATCTTGAGGTTCTTTA-TAACTATAATAGA  649

seq1  ATTAAATAGAATTTAAATAGATGGTCTTAGTAGGCACTTTATACAG  695
      |||||||| |||||||||||||||||||| || |||||||||||||
seq2  ATTAAATAAAATTTAAATAGATGGTCTTAATAAGCACTTTATACAG  695