BAC Information

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BAC

Clone NameB6Ng01-136A09
Chromosome6 (Build37)
Map Location 16,449,975 - 16,636,075
singlet/doubletdoublet
Overlap genenone
Upstream geneMdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136A09.bB6Ng01-136A09.g
ACCDH935914DH935915
length9701,150
definitionDH935914|Mus musculus domesticus DNA, BAC clone: B6Ng01-136A09, 5' end.DH935915|Mus musculus domesticus DNA, BAC clone: B6Ng01-136A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,449,975 - 16,450,944)(16,634,920 - 16,636,075)
sequence
gaattcattgagctctattgttttcatcaatttggttttatatgataaat
acataaatcagtaccatcctaagggattggaactatgacagagggcatgc
acaagaacctgagtttacttcaccagccttcaaagtttcaattaaataat
taatgaggaaatatatattatctaaggaagatattcacaaaaccgaatga
gatagggttctacacacaggttttcttttgtcctccatatgctgctccta
tcaggagtcccaggatctatgtacttaggaaggcttcttgcaggagaagc
tgacataagcatctgttcaaaattgaatttaggcctggttgcctagggaa
gatgacttattagaagcccagatggttgaatccagtcttcatgccagttg
gtattacataactgaagccccacttgaaatcacatggctcgtctttctag
tatgacactttctcatcctgacagtggtatgcatactccatcctcactaa
ccaaaggactgggcactgccatcagaagctgagagcagaggccagatctc
tatttgaaagtccactttctctcttggatgaatgtgtctccagtgtcatg
taagcagagcaatgtttgctgtttgaagcattcttgtgaccttttccatg
tctttttctgttccaaacagtccgttccatcagatttctttatgtcttat
gtattcataataagaggggcaaacagaagattattttttatatttttttt
tattcttaggtatgtatttcatttacatttccaatgctattccaaaaagt
cccccacaccctcccacacccacccactaccacctcttggccctggcatt
cccctgtactgaggtatataaagtctgcatgatcaatgggcctctctttc
cactgatggccgaccaggccatcttctgatacatatgcagctagagacac
gagctggggggggggggggt
gaattcctaatacggaatgggaaaatgtatgttcttcaggccaatataaa
atgtcttcactaattcagtgatgatggagcacaaatatcatgagtaagaa
gagtgaagatactttagtaacttttaatgtacatttcaaaatgttgaaat
aaaaaaccaaaggtactcagaaaatcactattttagtttatctgtaagca
gagtggagtccactaaaacccatcaattctctatacttatcttatgtggt
ccaataaagttcagtatagtgaaagaacacacataaaaatctattactgg
gattccccacagcacaatctaggtttcagttgctccaaattaataatagt
ttcataatatagttttaaatataactaatattagcactgttaaagataaa
acataccttgagtgtgctaaaacccaaattcataaacttagagacccttg
caaatcaaaagcaagtgacatcaatatttgagctgtacatgtactgaaac
taaagaaaagtgatgacatccttctgatatttgtcatcaaagctgtctca
gtgactgcaggggatgtgttcaacttttaaaaaatgaagttagatgccaa
atccgaaggatacctagcaagataaagtctcatgataagtgaaggaaaaa
aaaaatactgagaagcattcactcttggcaacccaaaatagtcttacacg
atgcagaggcaacacgtgaagagttttgatctgtgggttgtggaaggctt
tattcaaggaatgttaggaagtatgttctacaggaaagagaaaagaggga
aagagaagaaagaataaaacaaaaggaataaaataattccattaattaag
acagcagttcttgtactgaagatcgataattccaagttcctgggagtggt
cctagctattctgagcagagcagtcctctccaccactcctgtgtcctgtg
ctgatatgttgtctgtccccacaggatcatagctaatccttatgctcctt
gcttctccctgtcttttttcctccctgcctaccaatcccaccaaagcata
ttttcctcggtcttctaaagtggatgtaattttttcttggaattaagatg
caagggttcggccttcaccacacccgaacattattgacattactactttg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16449975_16450944
seq2: B6Ng01-136A09.b_44_1013

seq1  GAATTCATTGAGCTCTATTGTTTTCATCAATTTGGTTTTATATGATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAGCTCTATTGTTTTCATCAATTTGGTTTTATATGATAAAT  50

seq1  ACATAAATCAGTACCATCCTAAGGGATTGGAACTATGACAGAGGGCATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATCAGTACCATCCTAAGGGATTGGAACTATGACAGAGGGCATGC  100

seq1  ACAAGAACCTGAGTTTACTTCACCAGCCTTCAAAGTTTCAATTAAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAACCTGAGTTTACTTCACCAGCCTTCAAAGTTTCAATTAAATAAT  150

seq1  TAATGAGGAAATATATATTATCTAAGGAAGATATTCACAAAACCGAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGGAAATATATATTATCTAAGGAAGATATTCACAAAACCGAATGA  200

seq1  GATAGGGTTCTACACACAGGTTTTCTTTTGTCCTCCATATGCTGCTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGTTCTACACACAGGTTTTCTTTTGTCCTCCATATGCTGCTCCTA  250

seq1  TCAGGAGTCCCAGGATCTATGTACTTAGGAAGGCTTCTTGCAGGAGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTCCCAGGATCTATGTACTTAGGAAGGCTTCTTGCAGGAGAAGC  300

seq1  TGACATAAGCATCTGTTCAAAATTGAATTTAGGCCTGGTTGCCTAGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAAGCATCTGTTCAAAATTGAATTTAGGCCTGGTTGCCTAGGGAA  350

seq1  GATGACTTATTAGAAGCCCAGATGGTTGAATCCAGTCTTCATGCCAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTTATTAGAAGCCCAGATGGTTGAATCCAGTCTTCATGCCAGTTG  400

seq1  GTATTACATAACTGAAGCCCCACTTGAAATCACATGGCTCGTCTTTCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACATAACTGAAGCCCCACTTGAAATCACATGGCTCGTCTTTCTAG  450

seq1  TATGACACTTTCTCATCCTGACAGTGGTATGCATACTCCATCCTCACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACACTTTCTCATCCTGACAGTGGTATGCATACTCCATCCTCACTAA  500

seq1  CCAAAGGACTGGGCACTGCCATCAGAAGCTGAGAGCAGAGGCCAGATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGACTGGGCACTGCCATCAGAAGCTGAGAGCAGAGGCCAGATCTC  550

seq1  TATTTGAAAGTCCACTTTCTCTCTTGGATGAATGTGTCTCCAGTGTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAAGTCCACTTTCTCTCTTGGATGAATGTGTCTCCAGTGTCATG  600

seq1  TAAGCAGAGCAATGTTTGCTGTTTGAAGCATTCTTGTGACCTTTTCCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGAGCAATGTTTGCTGTTTGAAGCATTCTTGTGACCTTTTCCATG  650

seq1  TCTTTTTCTGTTCCAAACAGTCCGTTCCATCAGATTTCTTTATGTCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTGTTCCAAACAGTCCGTTCCATCAGATTTCTTTATGTCTTAT  700

seq1  GTATTCATAATAAGAGGGGCAAACAGAAGATTATTTTTTATATTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCATAATAAGAGGGGCAAACAGAAGATTATTTTTTATATTTTTTTT  750

seq1  TATTCTTAGGTATGTATTTCATTTACATTTCCAATGCTATTCCAAAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTAGGTATGTATTTCATTTACATTTCCAATGCTATTCCAAAAAGT  800

seq1  CCCCCACACCCTCCCACACCCACCCACTACCACCTCTTGGCCCTGGCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACACCCTCCCACACCCACCCACTACCACCTCTTGGCCCTGGCATT  850

seq1  CCCCTGTACTGAGGTATATAAGGTCTGCATGATCAATGGGCCTCTCTTTC  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCCCTGTACTGAGGTATATAAAGTCTGCATGATCAATGGGCCTCTCTTTC  900

seq1  CACTGATGGCCGACCAGGCCATCTTCTGATACATATGCAGCTAGAGACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATGGCCGACCAGGCCATCTTCTGATACATATGCAGCTAGAGACAC  950

seq1  GAGCTGGGGGGGGGGGGGGT  970
      ||||||||||||||||||||
seq2  GAGCTGGGGGGGGGGGGGGT  970

seq1: chr6_16634920_16636075
seq2: B6Ng01-136A09.g_70_1219 (reverse)

seq1  CAAAGTAGT-ATGTCAATAATGTCTGGGGTGTGGTGATAGCCCCGAAACA  49
      ||||||||| ||||||||||||| | |||||||||||  |  ||||| | 
seq2  CAAAGTAGTAATGTCAATAATGT-TCGGGTGTGGTGAAGG--CCGAACCC  47

seq1  CTGCATCTTAATTTCAAAGAAAAAATATCATCTCACTTTAGAAGACCGAG  99
       |||||||||| ||| ||||||||||  |||| |||||||||||||||||
seq2  TTGCATCTTAA-TTCCAAGAAAAAATTACATC-CACTTTAGAAGACCGAG  95

seq1  GAAAATATGCTTTGTGTGGAATT-GTAGGCAGTGAGAAAAAAAGACAGAG  148
      |||||||||||||| |||| ||| |||||||| ||| ||||||||||| |
seq2  GAAAATATGCTTTG-GTGGGATTGGTAGGCAGGGAGGAAAAAAGACAGGG  144

seq1  AGAAGCAAAGAGCATAAGGATTAAGCTATGATCCTGTGGGGACAGACAAA  198
      |||||||| ||||||||||||| |||||||||||||||||||||||| ||
seq2  AGAAGCAAGGAGCATAAGGATT-AGCTATGATCCTGTGGGGACAGAC-AA  192

seq1  CATATCAGCCACAGGACACAGG-GTGGTGGAGAGGACTGCTCTGCTCAGA  247
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  CATATCAG-CACAGGACACAGGAGTGGTGGAGAGGACTGCTCTGCTCAGA  241

seq1  ATAGCTAGGACCACTCCCAGGAACTTGGAATTATCGATCTTCAGTACAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAGGACCACTCCCAGGAACTTGGAATTATCGATCTTCAGTACAAG  291

seq1  AACTGCTGTCTTAATTAATGGAATTATTTTATTCCTTTTGTTTTATTCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGTCTTAATTAATGGAATTATTTTATTCCTTTTGTTTTATTCTT  341

seq1  TCTTCTCTTTCCCTCTTTTCTCTTTCCTGTAGAACATACTTCCTAACATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTTTCCCTCTTTTCTCTTTCCTGTAGAACATACTTCCTAACATT  391

seq1  CCTTGAATAAAGCCTTCCACAACCCACAGATCAAAACTCTTCACGTGTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAATAAAGCCTTCCACAACCCACAGATCAAAACTCTTCACGTGTTG  441

seq1  CCTCTGCATCGTGTAAGACTATTTTGGGTTGCCAAGAGTGAATGCTTCTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCATCGTGTAAGACTATTTTGGGTTGCCAAGAGTGAATGCTTCTC  491

seq1  AGTATTTTTTTTTTCCTTCACTTATCATGAGACTTTATCTTGCTAGGTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTTTTTTCCTTCACTTATCATGAGACTTTATCTTGCTAGGTAT  541

seq1  CCTTCGGATTTGGCATCTAACTTCATTTTTTAAAAGTTGAACACATCCCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGGATTTGGCATCTAACTTCATTTTTTAAAAGTTGAACACATCCCC  591

seq1  TGCAGTCACTGAGACAGCTTTGATGACAAATATCAGAAGGATGTCATCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCACTGAGACAGCTTTGATGACAAATATCAGAAGGATGTCATCAC  641

seq1  TTTTCTTTAGTTTCAGTACATGTACAGCTCAAATATTGATGTCACTTGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTAGTTTCAGTACATGTACAGCTCAAATATTGATGTCACTTGCT  691

seq1  TTTGATTTGCAAGGGTCTCTAAGTTTATGAATTTGGGTTTTAGCACACTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTGCAAGGGTCTCTAAGTTTATGAATTTGGGTTTTAGCACACTC  741

seq1  AAGGTATGTTTTATCTTTAACAGTGCTAATATTAGTTATATTTAAAACTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATGTTTTATCTTTAACAGTGCTAATATTAGTTATATTTAAAACTA  791

seq1  TATTATGAAACTATTATTAATTTGGAGCAACTGAAACCTAGATTGTGCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGAAACTATTATTAATTTGGAGCAACTGAAACCTAGATTGTGCTG  841

seq1  TGGGGAATCCCAGTAATAGATTTTTATGTGTGTTCTTTCACTATACTGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAATCCCAGTAATAGATTTTTATGTGTGTTCTTTCACTATACTGAA  891

seq1  CTTTATTGGACCACATAAGATAAGTATAGAGAATTGATGGGTTTTAGTGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGGACCACATAAGATAAGTATAGAGAATTGATGGGTTTTAGTGG  941

seq1  ACTCCACTCTGCTTACAGATAAACTAAAATAGTGATTTTCTGAGTACCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACTCTGCTTACAGATAAACTAAAATAGTGATTTTCTGAGTACCTT  991

seq1  TGGTTTTTTATTTCAACATTTTGAAATGTACATTAAAAGTTACTAAAGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTTATTTCAACATTTTGAAATGTACATTAAAAGTTACTAAAGTA  1041

seq1  TCTTCACTCTTCTTACTCATGATATTTGTGCTCCATCATCACTGAATTAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTCTTCTTACTCATGATATTTGTGCTCCATCATCACTGAATTAG  1091

seq1  TGAAGACATTTTATATTGGCCTGAAGAACATACATTTTCCCATTCCGTAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACATTTTATATTGGCCTGAAGAACATACATTTTCCCATTCCGTAT  1141

seq1  TAGGAATTC  1156
      |||||||||
seq2  TAGGAATTC  1150