BAC Information

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BAC

Clone NameB6Ng01-136A12
Chromosome6 (Build37)
Map Location 73,077,712 - 73,203,117
singlet/doubletdoublet
Overlap geneDnahc6, Suclg1
Upstream geneSt3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10
Downstream geneOlfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136A12.bB6Ng01-136A12.g
ACCDH935920DH935921
length1,1211,097
definitionDH935920|Mus musculus domesticus DNA, BAC clone: B6Ng01-136A12, 5' end.DH935921|Mus musculus domesticus DNA, BAC clone: B6Ng01-136A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,201,982 - 73,203,117)(73,077,712 - 73,078,803)
sequence
gaattcacaaatgtaaactcaccaccctactggcccacctgcagccaact
tcacaaagtaactgacttttaacaaagtaactaatttaaaagaaaaccag
tttgttcaactcacactttagggcagccttatctgtccagcctgtggtga
ggacccctctgcctgtctataacatggcagaaaaccaacaagcgaacagg
atgccaaggcgctggtcaagttcatggggcagccatgcttggtaactcac
ctcaggaggggtaagttgggcaggctaccagtaacctcttctaggcacag
ggatctcacagttcaccacctcactgggaactcagagttccctcctagca
tgggaactcttggggaacactcaaacctgctctaatatagcattaaccat
gaattatacatatgcaaaacaaaggctattgtggtccccaaatgaagaga
ccttgttgtgtgacaaaacttttcctggggagatgcaacacacataggga
gtccaggacagaccaaagtacaaacactaacaaagtccaacttggtgaac
cactgagttttactggggttacttacaggaatatgggtgaggggttactg
actggagacagctgcagaaccacaggccacccagcatggatgacatctca
caaagctgggaacctggaacactttgcacaacctgcagcagcttaacagg
ctggagaatggcctctgctggtgcctcagttggtctaaattacttccaag
cagcttggcttgtttctgcttctgccaggtatgagagtcttctttgcagc
ttggctctcttccgtctgaggggaaggctcagcttttatggcctactcta
agagtaaatctgatcagtttagggacttcctgaaactactcagagatgtt
tactttcctgcttaaggagcttcgtcctacaaagtggaatattttaattg
taaaagaactgtacatagtagactacatacatgggagtatctcagcagct
ccttaccctaaataccaatcagctatcaacataaaacctatatatcacta
tactatgatgcatcaatactatggctcatgatcacaagcaccatgttttg
taaatgtaaagccctttgttt
gaattcagggatttgcagacaagctgaaagcacggcattcctctaatctc
acatgccacgagagtgattcacatttgtgcactgcagggcaacgagagcc
ccaacagatgcagggagacttgagaagacatgcagctgcgcttacttttt
tagacatggtcctcatccacgttttaacataaggcatccacttgagttct
tcggggtccacgaacaccattccacatcggctgaccgtggcaggagaggc
caccctgaggtcttgtacctaaagttgaacagctaataggttattttcat
atcccttcaactttagcactaatgaatctctctctctgctctctctcgct
tttcaagacaggatttctctgtatagccctggctgtcctgaaacccactc
tgtagactacactcttaaagtgtgatctaacatggaaagggagagcgtgg
agaagagtggaagagtagtatgcaatttgaaaacagacagacaagttagg
tgaaggtttaaaatagaacacattatcagtctttctgtgcctctgtctct
gtctgcctctatctctctgtctgtctgtccatccgtccatccatctgtct
ctgtctgcctctatctctctgtctgtctgtccatccgtccatccatctgt
ctctgtctgcctctatctctgtctgtccatccatctgtctgtctctgtct
ctgtttctgtctctctgtctctctctgtctctctgtctctctctctctgt
ctctctctctttgtctctctctctccctctcacgagacccaccagcctct
ctacctttccattgctggaattacaggtgtgccccaccacacttagcgta
ttatctaattctttagtttttgttgattttttttatattatctacttctt
aagggtacatgatttgtcttcccccttttcatccgccatttttgtatcct
aacatctagccacatacatggtgcacagcagataatctacatatctgacg
gacagcaagattacgagtgatattttctttggatttttgtagccgtgttt
gactcctcatcctttctcacaagaggaaggtcatgcccagtcttggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_73201982_73203117
seq2: B6Ng01-136A12.b_46_1166 (reverse)

seq1  AAACAAGAGTGCTTTACATTTTACAAAACATGGTGCTTGTGATCAATTGA  50
      |||||| || |||||||| ||||||||||||||||||||||||||  |||
seq2  AAACAA-AGGGCTTTACA-TTTACAAAACATGGTGCTTGTGATCA--TGA  46

seq1  GCCAATAGTATTGAATGCATCATTAGTATAAGTGAATATATA-GTTTTAT  99
      ||| ||||||||| |||||||| |||||| |||| ||||||| |||||||
seq2  GCC-ATAGTATTG-ATGCATCA-TAGTAT-AGTG-ATATATAGGTTTTAT  91

seq1  GTTTGAATAGCTGATTGGTATTTAGGGTAAGGAGCTGCTGAGATACTCCC  149
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTT--GATAGCTGATTGGTATTTAGGGTAAGGAGCTGCTGAGATACTCCC  139

seq1  ATGTATTGTAGGTCTACTATGTAACAGTTCCTTTTACAATTAAAATATTC  199
      ||||| |||| ||||||||||| |||||| ||||||||||||||||||||
seq2  ATGTA-TGTA-GTCTACTATGT-ACAGTT-CTTTTACAATTAAAATATTC  185

seq1  CACCTTGTAGGACGAAGCTCCTTAAGCAGGAAAGTAAACATCTCTGAGTA  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTAGGACGAAGCTCCTTAAGCAGGAAAGTAAACATCTCTGAGTA  235

seq1  GTTTCAGGAAGTCCCTAAAACTGATCAGATTTACTCTTAGAGTAGGCCAT  299
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTTCAGGAAGTCCCT-AAACTGATCAGATTTACTCTTAGAGTAGGCCAT  284

seq1  AAAAGCTGAGCCTTCCCCTCAGACGGAAGGGAGCCAAGCTGCAAAGAAGA  349
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAAGCTGAGCCTTCCCCTCAGACGGAAGAGAGCCAAGCTGCAAAGAAGA  334

seq1  CTCTCATACCTGGCAGAAGCAGAAACAAGCCAAGCTGCTTGGAAGTAATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATACCTGGCAGAAGCAGAAACAAGCCAAGCTGCTTGGAAGTAATT  384

seq1  TAGACCAACTGAGGCACCAGCAGAGGCCATTCTCCAGCCTGTTAAGCTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAACTGAGGCACCAGCAGAGGCCATTCTCCAGCCTGTTAAGCTGC  434

seq1  TGCAGGTTGTGCAAAGTGTTCCAGGTTCCCAGCTTTGTGAGATGTCATCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTTGTGCAAAGTGTTCCAGGTTCCCAGCTTTGTGAGATGTCATCC  484

seq1  ATGCTGGGTGGCCTGTGGTTCTGCAGCTGTCTCCAGTCAGTAACCCCTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGTGGCCTGTGGTTCTGCAGCTGTCTCCAGTCAGTAACCCCTCA  534

seq1  CCCATATTCCTGTAAGTAACCCCAGTAAAACTCAGTGGTTCACCAAGTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATTCCTGTAAGTAACCCCAGTAAAACTCAGTGGTTCACCAAGTTG  584

seq1  GACTTTGTTAGTGTTTGTACTTTGGTCTGTCCTGGACTCCCTATGTGTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTTAGTGTTTGTACTTTGGTCTGTCCTGGACTCCCTATGTGTGT  634

seq1  TGCATCTCCCCAGGAAAAGTTTTGTCACACAACAAGGTCTCTTCATTTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCCCCAGGAAAAGTTTTGTCACACAACAAGGTCTCTTCATTTGG  684

seq1  GGACCACAATAGCCTTTGTTTTGCATATGTATAATTCATGGTTAATGCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACAATAGCCTTTGTTTTGCATATGTATAATTCATGGTTAATGCTA  734

seq1  TATTAGAGCAGGTTTGAGTGTTCCCCAAGAGTTCCCATGCTAGGAGGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGCAGGTTTGAGTGTTCCCCAAGAGTTCCCATGCTAGGAGGGAA  784

seq1  CTCTGAGTTCCCAGTGAGGTGGTGAACTGTGAGATCCCTGTGCCTAGAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTTCCCAGTGAGGTGGTGAACTGTGAGATCCCTGTGCCTAGAAG  834

seq1  AGGTTACTGGTAGCCTGCCCAACTTACCCCTCCTGAGGTGAGTTACCAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACTGGTAGCCTGCCCAACTTACCCCTCCTGAGGTGAGTTACCAAG  884

seq1  CATGGCTGCCCCATGAACTTGACCAGCGCCTTGGCATCCTGTTCGCTTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGCCCCATGAACTTGACCAGCGCCTTGGCATCCTGTTCGCTTGT  934

seq1  TGGTTTTCTGCCATGTTATAGACAGGCAGAGGGGTCCTCACCACAGGCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCTGCCATGTTATAGACAGGCAGAGGGGTCCTCACCACAGGCTG  984

seq1  GACAGATAAGGCTGCCCTAAAGTGTGAGTTGAACAAACTGGTTTTCTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATAAGGCTGCCCTAAAGTGTGAGTTGAACAAACTGGTTTTCTTTT  1034

seq1  AAATTAGTTACTTTGTTAAAAGTCAGTTACTTTGTGAAGTTGGCTGCAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTTACTTTGTTAAAAGTCAGTTACTTTGTGAAGTTGGCTGCAGG  1084

seq1  TGGGCCAGTAGGGTGGTGAGTTTACATTTGTGAATTC  1136
      |||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAGTAGGGTGGTGAGTTTACATTTGTGAATTC  1121

seq1: chr6_73077712_73078803
seq2: B6Ng01-136A12.g_69_1165

seq1  GAATTCAGGGATTTGCAGACAAGCTGAAAGCACGGCATTCCTCTAATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGATTTGCAGACAAGCTGAAAGCACGGCATTCCTCTAATCTC  50

seq1  ACATGCCACGAGAGTGATTCACATTTGTGCACTGCAGGGCAACGAGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCACGAGAGTGATTCACATTTGTGCACTGCAGGGCAACGAGAGCC  100

seq1  CCAACAGATGCAGGGAGACTTGAGAAGACATGCAGCTGCGCTTACTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGATGCAGGGAGACTTGAGAAGACATGCAGCTGCGCTTACTTTTT  150

seq1  TAGACATGGTCCTCATCCACGTTTTAACATAAGGCATCCACTTGAGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATGGTCCTCATCCACGTTTTAACATAAGGCATCCACTTGAGTTCT  200

seq1  TCGGGGTCCACGAACACCATTCCACATCGGCTGACCGTGGCAGGAGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGTCCACGAACACCATTCCACATCGGCTGACCGTGGCAGGAGAGGC  250

seq1  CACCCTGAGGTCTTGTACCTAAAGTTGAACAGCTAATAGGTTATTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGAGGTCTTGTACCTAAAGTTGAACAGCTAATAGGTTATTTTCAT  300

seq1  ATCCCTTCAACTTTAGCACTAATGAATCTCTCTCTCTGCTCTCTCTCGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCAACTTTAGCACTAATGAATCTCTCTCTCTGCTCTCTCTCGCT  350

seq1  TTTCAAGACAGGATTTCTCTGTATAGCCCTGGCTGTCCTGAAACCCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGACAGGATTTCTCTGTATAGCCCTGGCTGTCCTGAAACCCACTC  400

seq1  TGTAGACTACACTCTTAAAGTGTGATCTAACATGGAAAGGGAGAGCGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACTACACTCTTAAAGTGTGATCTAACATGGAAAGGGAGAGCGTGG  450

seq1  AGAAGAGTGGAAGAGTAGTATGCAATTTGAAAACAGACAGACAAGTTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTGGAAGAGTAGTATGCAATTTGAAAACAGACAGACAAGTTAGG  500

seq1  TGAAGGTTTAAAATAGAACACATTATCAGTCTTTCTGTGCCTCTGTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTTTAAAATAGAACACATTATCAGTCTTTCTGTGCCTCTGTCTCT  550

seq1  GTCTGCCTCTATCTCTCTGTCTGTCTGTCCATCCGTCCATCCATCTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTCTATCTCTCTGTCTGTCTGTCCATCCGTCCATCCATCTGTCT  600

seq1  CTGTCTGCCTCTATCTCTCTGTCTGTCTGTCCATCCGTCCATCCATCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCCTCTATCTCTCTGTCTGTCTGTCCATCCGTCCATCCATCTGT  650

seq1  CTCTGTCTGCCTCTATCTCTGTCTGTCCATCCATCTGTCTGTCTCTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTGCCTCTATCTCTGTCTGTCCATCCATCTGTCTGTCTCTGTCT  700

seq1  CTGTTTCTGTCTCTCTGTCTCTCTCTGTCTCTCTGTCTCTCTCTCTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTGTCTCTCTGTCTCTCTCTGTCTCTCTGTCTCTCTCTCTCTGT  750

seq1  CTCTCTCTCTTTGTCTCTCTCTCTCCCTCTCACGAGACCCACCAGCCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTTTGTCTCTCTCTCTCCCTCTCACGAGACCCACCAGCCTCT  800

seq1  CTACCTTCCAATTGCTGGAATTACAGGTGTGCCCCACCACAC-TAGCGTA  849
      ||||||| | |||||||||||||||||||||||||||||||| |||||||
seq2  CTACCTTTCCATTGCTGGAATTACAGGTGTGCCCCACCACACTTAGCGTA  850

seq1  TTATCTAATTCTTTAGTTTTTGTTGATTTTTTTTATATTATCTACTTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAATTCTTTAGTTTTTGTTGATTTTTTTTATATTATCTACTTCTT  900

seq1  AAGGGTACATGA-TTGTCTTCCCCC-TTTCATCCGCCATTTTTGTATCCT  947
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  AAGGGTACATGATTTGTCTTCCCCCTTTTCATCCGCCATTTTTGTATCCT  950

seq1  AACATCTAGCCACATACATGGTGCACAGCAGATAATCTACATATCTGACG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTAGCCACATACATGGTGCACAGCAGATAATCTACATATCTGACG  1000

seq1  GACAGCAAGATTACGAGTGATATTTTCTGTGAATTTTTGTAGCCGTGTTT  1047
      |||||||||||||||||||||||||||| || ||||||||||||||||||
seq2  GACAGCAAGATTACGAGTGATATTTTCTTTGGATTTTTGTAGCCGTGTTT  1050

seq1  GACT-CTCATCC-TTCTCACAAAGAGAAGGTCATGCCCAGTCCTGGC  1092
      |||| ||||||| |||||||||   ||||||||||||||||| ||||
seq2  GACTCCTCATCCTTTCTCACAAGAGGAAGGTCATGCCCAGTCTTGGC  1097