BAC Information

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BAC

Clone NameB6Ng01-136E15
Chromosome6 (Build37)
Map Location 36,894,948 - 36,896,120
singlet/doubletsinglet
Overlap geneDgki
Upstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514
Downstream geneEG665024, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136E15.bB6Ng01-136E15.g
ACCDH936102DH936103
length1,162895
definitionDH936102|Mus musculus domesticus DNA, BAC clone: B6Ng01-136E15, 5' end.DH936103|Mus musculus domesticus DNA, BAC clone: B6Ng01-136E15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccaaagctcacatatattcccccatacaagggcatccacacta
tgtactgttccttagagactggatcatagaaagagacccctgtaggcatc
caaagaacaggcttagggcatcttggctaggaactgtaagaacctaaagc
atagtcaagaaaaacaagaaaagatctccaataaatggtctgatgctaat
ccagccaattgtgatttttagattctaaacaaaatgtcgatagctagctc
actatgatttaattattggaaatttttctgatcaaaataattttcaactt
taataattgtaatgtacgagaaaactaagataatcccaggaagcagtgtt
tagctagaaagggcctcagtggggtatgccaaacctgggggtgtggagtc
tcctcacataaaacctagagggaactctgacttggaattctcaaggatca
gtttgcctagctcacataaagagtttgaagtacaaagcttttcccaagaa
tctcgatgtatatggctgtgtgtcggtgcgtgggtgggtacacatgaatg
tgggtgcttgcagaggcaggaaagggcactggaacttctggacctgaagg
tgcaggctgcctaaagtacatactgggaaccaaatcccggtccttttcag
agcagctactgcccatctcgccagtcatggttttcatgtttaacaataaa
cagaaatgtagaaaatgatgggagaactgggacaaccaactaaagcagaa
ggtagggaataaaatttttaaaaagaagttttgttataggataaaaatat
gtgaggtagtagaaatgggcaatccaaagccaaagggaatctcccagtgt
cagccacaagatcttaggacatgagatgcattgacttccaaacaatagga
gcatgtgagtccaagacagatgtgcacaaaatgctcaccactaagactgt
catgtcccttatagagctggtttcaaaccaaacacaaaatgtgagaaagc
ttaaccagctacgcgtccagtgtgtatgtgtgtggtaatatacacctatg
acaagactattattccaaatatgctttaccttaccactcttataacaaga
gttagatcacaataaatcaggcaactgcaaatacttatccttgagcgctc
tctccatttaac

gaattcagaatcaccatggcaacatagctgtgagtgtgactgtaaggtgt
ttccaaaaggaaaacttcacctctgaatcttggctccagtcctggattga
ataaaaaggagaaagagggctgagcgccagcaatcaccctctctgtgtct
gtctgcctgcctgtctctgtgtgtctatctgtctctctctttccctcctc
tctctctctctctctctctctctctctctctctctctctctcttcacccc
ctctctgcagctacagacacagtgagaccaactgcctggactcatgctcc
tgccgtcatgccttctctgccatgacagactgccccgtgtgtctgtgagc
cgaacaaacccttccttccttcagtcgcttttagcaggcagcttgttaca
gcaacaaggaaagtaacctcagcacctagaaatcttaggtggcagagatg
aaaataacaactggagagacaaaggaaagaattagagaattctcagagtt
agggagttagagaagggagtgatttaaaagaaaatcccacatgtgtgtgg
gatgtaaatgtgtaaataaatgaaaacacgtaacaaacaaacatgtacct
aagaataaaaaaaaaaaaacccaaaaccaaacgtgtagaatccctgtgat
tttagggaaaggaaggaaggctgaggaaagggactggagcaaaaaacaac
ctgcacagagactgaaaggagtctgatcccacaagttgaccttccctgct
gactgtgtgtatcaggaacatccctgctgaccaggctgggagggggactt
gcgaaaccttcccgttcacagtgtggtctgccatggaagaaactaacgat
ggaatggaatgatatggtgctttgacccgcacccctttttgcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_36894948_36896120
seq2: B6Ng01-136E15.b_48_1209

seq1  GAATTCTCCAAAGCTCACATATATTCCCCCATACAAGGGCATCCACACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAAGCTCACATATATTCCCCCATACAAGGGCATCCACACTA  50

seq1  TGTACTGTTCCTTAGAGACTGGATCATAGAAAGAGACCCCTGTAGGCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGTTCCTTAGAGACTGGATCATAGAAAGAGACCCCTGTAGGCATC  100

seq1  CAAAGAACAGGCTTAGGGCATCTTGGCTAGGAACTGTAAGAACCTAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACAGGCTTAGGGCATCTTGGCTAGGAACTGTAAGAACCTAAAGC  150

seq1  ATAGTCAAGAAAAACAAGAAAAGATCTCCAATAAATGGTCTGATGCTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAAGAAAAACAAGAAAAGATCTCCAATAAATGGTCTGATGCTAAT  200

seq1  CCAGCCAATTGTGATTTTTAGATTCTAAACAAAATGTCGATAGCTAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAATTGTGATTTTTAGATTCTAAACAAAATGTCGATAGCTAGCTC  250

seq1  ACTATGATTTAATTATTGGAAATTTTTCTGATCAAAATAATTTTCAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATTTAATTATTGGAAATTTTTCTGATCAAAATAATTTTCAACTT  300

seq1  TAATAATTGTAATGTACGAGAAAACTAAGATAATCCCAGGAAGCAGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTGTAATGTACGAGAAAACTAAGATAATCCCAGGAAGCAGTGTT  350

seq1  TAGCTAGAAAGGGCCTCAGTGGGGTATGCCAAACCTGGGGGTGTGGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGAAAGGGCCTCAGTGGGGTATGCCAAACCTGGGGGTGTGGAGTC  400

seq1  TCCTCACATAAAACCTAGAGGGAACTCTGACTTGGAATTCTCAAGGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACATAAAACCTAGAGGGAACTCTGACTTGGAATTCTCAAGGATCA  450

seq1  GTTTGCCTAGCTCACATAAAGAGTTTGAAGTACAAAGCTTTTCCCAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCTAGCTCACATAAAGAGTTTGAAGTACAAAGCTTTTCCCAAGAA  500

seq1  TCTCGATGTATATGGCTGTGTGTCGGTGCGTGGGTGGGTACACATGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGATGTATATGGCTGTGTGTCGGTGCGTGGGTGGGTACACATGAATG  550

seq1  TGGGTGCTTGCAGAGGCAGGAAAGGGCACTGGAACTTCTGGACCTGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTTGCAGAGGCAGGAAAGGGCACTGGAACTTCTGGACCTGAAGG  600

seq1  TGCAGGCTGCCTAAAGTACATACTGGGAACCAAATCCCGGTCCTTTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCTGCCTAAAGTACATACTGGGAACCAAATCCCGGTCCTTTTCAG  650

seq1  AGCAGCTACTGCCCATCTCGCCAGTCATGGTTTTCATGTTTAACAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTACTGCCCATCTCGCCAGTCATGGTTTTCATGTTTAACAATAAA  700

seq1  CAGAAATGTAGAAAATGATGGGAGAACTGGGACAACCAACTAAAGCAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGTAGAAAATGATGGGAGAACTGGGACAACCAACTAAAGCAGAA  750

seq1  GGTAGGGAATAAAATTTTTAAAAAGAAGTTTTGTTATAGGATAAAAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGAATAAAATTTTTAAAAAGAAGTTTTGTTATAGGATAAAAATAT  800

seq1  GTGAGGTAGTAGAAATGGGCAATCCAAAGCCAAAGGGAATCTCCCAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTAGTAGAAATGGGCAATCCAAAGCCAAAGGGAATCTCCCAGTGT  850

seq1  CAGCCACAAGATCTTAGGACATGAGATGCATTGACTTCCAAACAATAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACAAGATCTTAGGACATGAGATGCATTGACTTCCAAACAATAGGA  900

seq1  GCATGTGAGTCCAAAGACAGATGTGCACAAAATGCTCACCACTAAGACTG  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCATGTGAGTCC-AAGACAGATGTGCACAAAATGCTCACCACTAAGACTG  949

seq1  TCATGTCCCTTATAGAGCTGGTTTCCAAACCAAACACAAAATGTGAGAAA  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCATGTCCCTTATAGAGCTGGTTT-CAAACCAAACACAAAATGTGAGAAA  998

seq1  GCCTAAACCAGCTACGCGTCCAAGTGTGTATGTGTGTGTAAATATACACA  1050
      | || |||||||||||||||| ||||||||||||||||  ||||||||| 
seq2  G-CTTAACCAGCTACGCGTCC-AGTGTGTATGTGTGTGGTAATATACACC  1046

seq1  TATGACAAGACTATTATTCCCAAATATGCTTTACCTTAACCCACTCCTTA  1100
      |||||||||||||||||| |||||||||||||||||||  ||||| ||||
seq2  TATGACAAGACTATTATT-CCAAATATGCTTTACCTTA--CCACT-CTTA  1092

seq1  TAACAAGAGTTAGATCACAATAAATCAGGCAAACTGCAAATACTTACTCC  1150
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  TAACAAGAGTTAGATCACAATAAATCAGGC-AACTGCAAATACTTA-TCC  1140

seq1  TTGGAGCAGCATCTCCATTTAAC  1173
      || ||||    ||||||||||||
seq2  TT-GAGCGCTCTCTCCATTTAAC  1162


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