BAC Information

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BAC

Clone NameB6Ng01-137D18
Chromosome6 (Build37)
Map Location 70,156,340 - 70,157,605
singlet/doubletsinglet
Overlap geneIgk
Upstream geneGm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26
Downstream geneLOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137D18.bB6Ng01-137D18.g
ACCDH936803DH936804
length1,2361,240
definitionDH936803|Mus musculus domesticus DNA, BAC clone: B6Ng01-137D18, 5' end.DH936804|Mus musculus domesticus DNA, BAC clone: B6Ng01-137D18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacacaaaggataagatcattgataatgcaagatacatggtatc
aattccccaataagacacagacaatagattgtggttgaatatagtatcca
aatttctgttgcaagaaagaatattgcagaatatgaaaacaataaataat
ttcagattaccaaaatcaaaatagggggaaattttcttatactaacacag
tgaaataagagtaaccaataagcactcatcactgataatgcaacatccat
ggtatcaattttcccaataaaagacacagaaaatgtccatctttctgttg
catctgaaaaaacatctttataccttcatgccttcacatcaaggatagac
attacctcaaggtaaaagaagggaaaaggtattccaatgaagtggaccca
aggagccagcgggtttatccattctaatacctgtgacaaaatggacttaa
catccaaactaatctctttgattagcttttcatcactatgacaacaagtg
atgataatcttggacgaacaaagagtcttttagatgtgtctccatatatc
tcctttatatagttcttttcttcatttctgaagtcctatatttacttaag
tattatttatgttcaacctgaagaatattcttccagtgtttttatttgaa
agctgagttggaggtgactctctggataaagtgcttcccatgtaagtttg
agaatctggtttataccccaagaatccacataaaatgagatgcagtggca
acatgtgactgtacttggagttatgctatcacacatgagagacagagaca
agagaatctctagaagacactgggccatggtgcctttcgtgagaattgtg
aaccccacctcagataggtcaatggcaacagccacacacaagattgtctc
ctgatattcacccacatgccatggcaaggggaaatttccttcaaatcata
tgaacacatatagacaccaccgaaaaacatagagaaaaataaatagtaat
tatcctaggaataattatattagtcctctaatggagtctttatttttatt
cgtcttagaaaacattatcattgtgttgtaatatctgaggatcaggtgtt
cttgaatttctttacatctttaactgtacattgttttgcatctccatatc
aactctagaaaaaacttacggaaagaattataaagaccttgctatcttta
gatacatgtggaagtgtgataaatctgctgacacca
gaattccttgaatttgttgccatatctggaacttaggagcatttggttgc
tctgggttgcctagtagagagtacttatgagttcctgccagatatggcca
ttgtttgtcttggactgaatgtgtttcagtatgttggagattgacaagag
tggagatgagctcaaagatgtggtcagaggggcttcaagtgctccataga
aaagaggaaaactgagtctccctgaagtttaaacaggcccctgcaagatg
tctactaaagctctggggatgagaggaagcaatagtaattagagaacaga
aagaagagtgagaatgtcctacctgatccccagtccaggagtgagaaagt
ggagttcaacaagagaaactgtggggtgcctctggaattgaggccgaaag
gatgatctgtttcagggctgggcaagagactaggtaattgaatatacaag
agagggagaaaagtgaatattacctacataatttccagtctgtgagggct
agctggttttcaggcaaagagtacctaagggtttggtgggtggaaaaaaa
atggatggagagtgggaaattgactggtgtatgctgcctgcttggtggtt
cagtgtttgacagatctctgatgtccatattagttgagactgctggtcct
cctaaagggtggctttcctcctcagcttctttcaatctttcccaagatgg
aaagacttctgtccattagttgtgtgcaactaattgcctcttactctttc
agctacatgttcagtctttctgagtgcgatcatgccaggttccttatttg
tgagtgttccacagccacagtaatagtgtcaggcccttggacctcctctt
gagctggatccctctttgggctatagctgaatcttctttaactcaagctc
ctctccatttccatccctgtcattctttaagcaggaacaattatcactca
gagttgtgacaatgggaatgcccttcctttctcatttgatgccttgggta
ctgctggggatgggatctacagttccttctcctactgtcaggcacttcat
ctagatctctgcctttgagttcctgagatactctcattctcaggcctggg
tcatttcgggaagggacacccaaacttctatcctctctaggttggtctgg
tttcatttctatcctgcctaaggctcagattctatttctctcacgaatac
cgaagatgaaggttccgctgtcggacgcaccgcacagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_70156340_70157605
seq2: B6Ng01-137D18.b_47_1282

seq1  GAATTCCACACAAAGGATAAGATCATTGATAATGCAAGATACATGGTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACAAAGGATAAGATCATTGATAATGCAAGATACATGGTATC  50

seq1  AATTCCCCAATAAGACACAGACAATAGATTGTGGTTGAATATAGTATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCCAATAAGACACAGACAATAGATTGTGGTTGAATATAGTATCCA  100

seq1  AATTTCTGTTGCAAGAAAGAATATTGCAGAATATGAAAACAATAAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGTTGCAAGAAAGAATATTGCAGAATATGAAAACAATAAATAAT  150

seq1  TTCAGATTACCAAAATCAAAATAGGGGGAAATTTTCTTATACTAACACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTACCAAAATCAAAATAGGGGGAAATTTTCTTATACTAACACAG  200

seq1  TGAAATAAGAGTAACCAATAAGCACTCATCACTGATAATGCAACATCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAGAGTAACCAATAAGCACTCATCACTGATAATGCAACATCCAT  250

seq1  GGTATCAATTTTCCCAATAAAAGACACAGAAAATGTCCATCTTTCTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCAATTTTCCCAATAAAAGACACAGAAAATGTCCATCTTTCTGTTG  300

seq1  CATCTGAAAAAACATCTTTATACCTTCATGCCTTCACATCAAGGATAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAAAAAACATCTTTATACCTTCATGCCTTCACATCAAGGATAGAC  350

seq1  ATTACCTCAAGGTAAAAGAAGGGAAAAGGTATTCCAATGAAGTGGACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTCAAGGTAAAAGAAGGGAAAAGGTATTCCAATGAAGTGGACCCA  400

seq1  AGGAGCCAGCGGGTTTATCCATTCTAATACCTGTGACAAAATGGACTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCAGCGGGTTTATCCATTCTAATACCTGTGACAAAATGGACTTAA  450

seq1  CATCCAAACTAATCTCTTTGATTAGCTTTTCATCACTATGACAACAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAACTAATCTCTTTGATTAGCTTTTCATCACTATGACAACAAGTG  500

seq1  ATGATAATCTTGGACGAACAAAGAGTCTTTTAGATGTGTCTCCATATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATCTTGGACGAACAAAGAGTCTTTTAGATGTGTCTCCATATATC  550

seq1  TCCTTTATATAGTTCTTTTCTTCATTTCTGAAGTCCTATATTTACTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATATAGTTCTTTTCTTCATTTCTGAAGTCCTATATTTACTTAAG  600

seq1  TATTATTTATGTTCAACCTGAAGAATATTCTTCCAGTGTTTTTATTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTATGTTCAACCTGAAGAATATTCTTCCAGTGTTTTTATTTGAA  650

seq1  AGCTGAGTTGGAGGTGACTCTCTGGATAAAGTGCTTCCCATGTAAGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGTTGGAGGTGACTCTCTGGATAAAGTGCTTCCCATGTAAGTTTG  700

seq1  AGAATCTGGTTTATACCCCAAGAATCCACATAAAATGAGATGCAGTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTGGTTTATACCCCAAGAATCCACATAAAATGAGATGCAGTGGCA  750

seq1  ACATGTGACTGTACTTGGAGTTATGCTATCACACATGAGAGACAGAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGACTGTACTTGGAGTTATGCTATCACACATGAGAGACAGAGACA  800

seq1  AGAGAATCTCTAGAAGACACTGGGCCATGGTGCCTTTCGTGAGAATTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATCTCTAGAAGACACTGGGCCATGGTGCCTTTCGTGAGAATTGTG  850

seq1  AACCCCACCTCAGATAAGGTCAATGGCAACAGCCACACACAAGATTGTCT  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACCCCACCTCAGAT-AGGTCAATGGCAACAGCCACACACAAGATTGTCT  899

seq1  CCTGATATTCACCCACATGCCATGGCAA-GGGAAATTTCCTTCAAATCAA  949
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  CCTGATATTCACCCACATGCCATGGCAAGGGGAAATTTCCTTCAAATC-A  948

seq1  TATGAACACATATAGACACCACC-AAAAACATAGAGAAAAAATAAAATAA  998
      ||||||||||||||||||||||| |||||||||||| |||||||||   |
seq2  TATGAACACATATAGACACCACCGAAAAACATAGAG-AAAAATAAA--TA  995

seq1  GTAATTATCCTAGGAATTAATTATATTAGTCCTCTTAATTGAGTCTTTAT  1048
      |||||||||||||||| ||||||||||||||||| |||| ||||||||||
seq2  GTAATTATCCTAGGAA-TAATTATATTAGTCCTC-TAATGGAGTCTTTAT  1043

seq1  TTTTATTCCGTCTTAGAAAACATTATCATTGTGTGTATATAATCT-TGAG  1097
      ||||||| ||||||||||||||||||||||||||   | |||| | ||| 
seq2  TTTTATT-CGTCTTAGAAAACATTATCATTGTGT---TGTAATATCTGA-  1088

seq1  GGATCAAGTTGTTCTTGAAATATCTTTACATCCTTTACACTGTACATTTG  1147
      ||||| || |||||||| ||| ||||||||| ||||| |||||||| |||
seq2  GGATC-AGGTGTTCTTG-AATTTCTTTACAT-CTTTA-ACTGTACA-TTG  1133

seq1  TTTTGCATTCTTCCATATCACACCTCAGAAAAACTACAGGGAAAAGATTT  1197
      ||||||||   |||||||||   ||   |||||||   ||  ||||| ||
seq2  TTTTGCAT--CTCCATATCAACTCTAGAAAAAACTTACGG--AAAGAATT  1179

seq1  AATAAAATAGA-CTTGCAAACTCCTTTAAGATACACATGTGATGTTGTAG  1246
       ||||   ||| ||||| | |    || ||||  |||||||    |||  
seq2  -ATAA---AGACCTTGCTATC----TTTAGAT--ACATGTGGAAGTGTGA  1219

seq1  TAAATTTTCTGCTGACACCA  1266
      ||||   |||||||||||||
seq2  TAAA---TCTGCTGACACCA  1236