BAC Information

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BAC

Clone NameB6Ng01-137N05
Chromosome6 (Build37)
Map Location 125,062,286 - 125,063,449
singlet/doubletsinglet
Overlap geneChd4
Upstream geneEG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92
Downstream geneNol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137N05.bB6Ng01-137N05.g
ACCDH937239DH937240
length1,156887
definitionDH937239|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N05, 5' end.DH937240|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaataaataaggagagaaggaaggtgagacgcttcagaaaacca
agcaattgtcagcacggtgctctgatagatactgcatcaacatccaagct
tatgaacaaaaagacattagcataatcaagcttctccctcaaaatatgta
ggaatttcaatgggaaaaagtaactttacagtagagaatttcagcagaca
ccatgacaaccaagtgaccaataatcactagaaaggacaaatatcaacat
cacgtacagtatcccatcggtggcattcttgaacaagcatcttttcagaa
agagacactacttggaataactggctagaaacttgaagtaccaatgccat
gcaaggacaggggtgaaatgtcagctaaggagctttttatctagctgcga
gtgtgaatagtggaatctacacttagagctatggctgggactggatcctc
aaacaggaaaggagagtaagagaaaaactggcgacattcagttgacagtg
tggccccatgtttcttcatttcctactgttggaaactctaccacagttcc
ataacttgctatttggtttggtttggagacatgacctcatcattaccagg
ttggccttgaactcttcagatcgccaggatgactctgaacttcctgtctc
cccttccccgatgctgaggttacagttgcatcaccacttacgcggtgctg
gggacctcacgaaatgttaggtaagcactcctcaccagacaacacccttt
gactttgagtacacttatgtgtcagcgtgtcagagtttgcatgccagtgc
acacatcaagtcgggggacagaggagtcttcttccactgtgacgtccaga
cgcaggaactcgggacataaccaagcagcatgcaccttctgtactcaaac
atctcactggccttcttatttatcttgtgtgtattacaagtgtgtgtaca
ttcgtgtagaagtcagaggacttctcacaggaactggtctttttcacata
ataggaaagaaatcagataaactgcttgggtgacaagtaccttcacctgc
tggccctcgctgcccctcaccttttgtttcagacaggtctcatgtagtct
tgcaaccagaaatcctggaatattttaaattttttaatcttaattttatt
tatatg
gaattcaggcggatttctgagtttgaggccagcctggtctacaaagtgaa
ttccaagacagccagggctatacagagaaaccctgtctagaaaaaacaaa
acaaaacaaacaaaacaaaataaaacaaaacaaaataaaaatgatgaatt
cataaagttcttaggtaaatggacagaactagaaaatatcatcctgagtg
aggtaacccagtcacaaaagaacacacatgatatgcactctcactgataa
gaggatattagcccagaaacttagaatgcccaagatacaattcacaaacc
acatgaaactcaagaaggaagaccaacgtgtggaagcttcggtccttctt
agaatataacaaaatactcacaggagaaaatagggagataaagtgtagag
cagagactgaaggaaaggccatccagagactgtctcatcccatatacagt
tatcaaacctagacactattgtggatgccaagaagtgcatctgacaggag
cctgatatggctgtctcctgagagaccctgccagagccttacaaatacag
aggcagatgctcgcagtcaaccattggactgagcacagggtccctaatag
agaggagttagagaaaggactgaaggagtttaaggggtttgtaaccccat
aggaagaacaacaatatcaacccatcagatcccccagagctctcagggac
taaaccaccaaccaaagagtacacatggagggacccttggctccagccac
atatgtagcagaggatagccttgtcaggcatcaatgggaggagaggacct
tagtcctatgaaggctggatagatgccccagtgtaggggaatcaagggca
gagaggcaggagtaggtgggtgagtggaggaacaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_125062286_125063449
seq2: B6Ng01-137N05.b_47_1202 (reverse)

seq1  CATAAAATAAAAATAAAGATATAAAAAAAATTTAAAAATAATTCAAAGAT  50
      |||| ||  ||||| |||||    |||||||||||||   |||| | |||
seq2  CATATAAATAAAATTAAGAT---TAAAAAATTTAAAA--TATTCCAGGAT  45

seq1  ATCTGGGTTGCATGACTACATGAGACCCTGTCTGGAAACAAAAGGTGGAG  100
       ||| ||||||| |||||||||||| ||||||| |||||||||||| |||
seq2  TTCT-GGTTGCAAGACTACATGAGA-CCTGTCT-GAAACAAAAGGT-GAG  91

seq1  GGGCAGCGAGGGGCCAGCAGGTGAAGGTACTTGTCACCC-AGCAGTTTAT  149
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  GGGCAGCGA-GGGCCAGCAGGTGAAGGTACTTGTCACCCAAGCAGTTTAT  140

seq1  CTGATTTCTGTCCTA-TATGTGAAAGAGAACCAGTTCCTGTGAGAAGTCC  198
      ||||||||| ||||| ||||||||| || |||||||||||||||||||||
seq2  CTGATTTCTTTCCTATTATGTGAAAAAG-ACCAGTTCCTGTGAGAAGTCC  189

seq1  TCTGAC-TCTACACGAATGTACACACACTTGT-ATACACACAAGATAAAT  246
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTGACTTCTACACGAATGTACACACACTTGTAATACACACAAGATAAAT  239

seq1  AAGAAGGCCAGTGAGATGTTTGAGTACAGAAGGTGCCTGCTGCTTGGTTA  296
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGAAGGCCAGTGAGATGTTTGAGTACAGAAGGTGCATGCTGCTTGGTTA  289

seq1  TGTCCCCGAGTTCCTGCGTCTGGACGTCACAGTGGAAGAAGACTCCTCTG  346
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGT-CCCGAGTTCCTGCGTCTGGACGTCACAGTGGAAGAAGACTCCTCTG  338

seq1  TCCCCCGACTTGATGTGTGCACTGGCATGCAAACTCTGACACGCTGACAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCGACTTGATGTGTGCACTGGCATGCAAACTCTGACACGCTGACAC  388

seq1  ATAAGTGTACTCAAAGTCAAAGGGTGTTGTCTGGTGAGGAGTGCTTACCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGTACTCAAAGTCAAAGGGTGTTGTCTGGTGAGGAGTGCTTACCT  438

seq1  AACATTTCGTGAGGTCCCCAGCACCGCGTAAGTGGTGATGCAACTGTAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCGTGAGGTCCCCAGCACCGCGTAAGTGGTGATGCAACTGTAAC  488

seq1  CTCAGCATCGGGGAAGGGGAGACAGGAAGTTCAGAGTCATCCTGGCGATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATCGGGGAAGGGGAGACAGGAAGTTCAGAGTCATCCTGGCGATC  538

seq1  TGAAGAGTTCAAGGCCAACCTGGTAATGATGAGGTCATGTCTCCAAACCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTTCAAGGCCAACCTGGTAATGATGAGGTCATGTCTCCAAACCA  588

seq1  AACCAAATAGCAAGTTATGGAACTGTGGTAGAGTTTCCAACAGTAGGAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATAGCAAGTTATGGAACTGTGGTAGAGTTTCCAACAGTAGGAAA  638

seq1  TGAAGAAACATGGGGCCACACTGTCAACTGAATGTCGCCAGTTTTTCTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAACATGGGGCCACACTGTCAACTGAATGTCGCCAGTTTTTCTCT  688

seq1  TACTCTCCTTTCCTGTTTGAGGATCCAGTCCCAGCCATAGCTCTAAGTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCCTTTCCTGTTTGAGGATCCAGTCCCAGCCATAGCTCTAAGTGT  738

seq1  AGATTCCACTATTCACACTCGCAGCTAGATAAAAAGCTCCTTAGCTGACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCACTATTCACACTCGCAGCTAGATAAAAAGCTCCTTAGCTGACA  788

seq1  TTTCACCCCTGTCCTTGCATGGCATTGGTACTTCAAGTTTCTAGCCAGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCCCTGTCCTTGCATGGCATTGGTACTTCAAGTTTCTAGCCAGTT  838

seq1  ATTCCAAGTAGTGTCTCTTTCTGAAAAGATGCTTGTTCAAGAATGCCACC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAGTAGTGTCTCTTTCTGAAAAGATGCTTGTTCAAGAATGCCACC  888

seq1  GATGGGATACTGTACGTGATGTTGATATTTGTCCTTTCTAGTGATTATTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGATACTGTACGTGATGTTGATATTTGTCCTTTCTAGTGATTATTG  938

seq1  GTCACTTGGTTGTCATGGTGTCTGCTGAAATTCTCTACTGTAAAGTTACT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTGGTTGTCATGGTGTCTGCTGAAATTCTCTACTGTAAAGTTACT  988

seq1  TTTTCCCATTGAAATTCCTACATATTTTGAGGGAGAAGCTTGATTATGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCATTGAAATTCCTACATATTTTGAGGGAGAAGCTTGATTATGCT  1038

seq1  AATGTCTTTTTGTTCATAAGCTTGGATGTTGATGCAGTATCTATCAGAGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTTTTGTTCATAAGCTTGGATGTTGATGCAGTATCTATCAGAGC  1088

seq1  ACCGTGCTGACAATTGCTTGGTTTTCTGAAGCGTCTCACCTTCCTTCTCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGCTGACAATTGCTTGGTTTTCTGAAGCGTCTCACCTTCCTTCTCT  1138

seq1  CCTTATTTATTGGAATTC  1164
      ||||||||||||||||||
seq2  CCTTATTTATTGGAATTC  1156