BAC Information

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BAC

Clone NameB6Ng01-138G16
Chromosome6 (Build37)
Map Location 21,325,279 - 21,326,357
singlet/doubletsinglet
Overlap geneKcnd2
Upstream geneLOC100040838
Downstream geneLOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138G16.b
ACCDH937684
length1,001
definitionDH937684|Mus musculus domesticus DNA, BAC clone: B6Ng01-138G16, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtgttgggacatcatggtctttagttagtgtcaaacaaaatag
attaaccaaataagctagggatggcccactttggggataaggttctttct
tctcaagttgtattgtacgttgattgcaaaccactgagaaaggtagcaca
ctcaacagggcattgattgcacagaacagccactcaacaatgctgaagaa
cagaacgtgaattgaggaacaggaccgacttacctgttagtgggttctgt
ccatggcatcgtcgggtgagaagattagcaggcaaattactctgcttttc
tgtcctgattcccaatgtaacaaaatccagcaaaattttatagcatttgc
aatatactactgggaacagaaggaaaaagctgtgctgagggacagagtcc
tgtcatagagcttccttcagagacagtctggatagctatggtagtgggtg
agacagttcaacacaagcagttggtggaagaaagacttcagcctgagatt
ttgttccacctgtaaaagagtacataggcaccaaaaacagagtggaaaaa
ggatgggaacatcatggttcttcgcaatacatagcttgactatggtggat
gctaacaagaacttgttgacaggagcctgatataggatcttccagtgcct
gacaaatacagaagtggatgctcacagccatccattggacagggcacagg
gtctccaatgaaggagctagagaaaggacccaaggagctgaaggggtttg
cagtcccataggaggaacaacaatatgaactaaccagtaaccccagggcc
ccctggaactaaccaatcaaagaaaacacatggtgggactcatggctcta
gccacatatgtagcagaggatgggctagttggtcatcaatgggaggagag
gctcttggtcctgtgaaggttctatgctcccagtataaaaagatgccaag
ggcaagaaagcagagtgggtaggttggtgagcaggggagtgggaagagga
a
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21325279_21326357
seq2: B6Ng01-138G16.b_44_1044 (reverse)

seq1  TTCCTCTTTTTATTAGATATTTTCTTTATTTACATTTCAAATGTTATCTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTCCTTGATTCCCATCCCAAGCCCCACTATCCTC-TCCCACTCCCCTG  99
                                     ||||| |||||||||||||
seq2  ------------------------------TTCCTCTTCCCACTCCCCTG  20

seq1  CTCACCAACCTACCCACTCCTGCTTCCTGGCCC-TGGCATTCTTCTATAC  148
      |||||||||||||||||| |||||| || |||| ||||||  || |||||
seq2  CTCACCAACCTACCCACT-CTGCTTTCTTGCCCTTGGCATCTTTTTATAC  69

seq1  TGGG-GCATAGAACCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATGA  197
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGGAGCATAGAACCTTCACAGGACCAAGAGCCTCTCCTCCCATTGATGA  119

seq1  CCAACTAGGCCATCCTCTGCTACATATGTGGCTAGAGCCATGAGTCCCAC  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTAGCCCATCCTCTGCTACATATGTGGCTAGAGCCATGAGTCCCAC  169

seq1  CATGTGTTTTCTTTGATTGGTTAGTTCCAGGGGGCCCTGGGGTTACTGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTTTCTTTGATTGGTTAGTTCCAGGGGGCCCTGGGGTTACTGGT  219

seq1  TAGTTCATATTGTTGTTCCTCCTATGGGACTGCAAACCCCTTCAGCTCCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCATATTGTTGTTCCTCCTATGGGACTGCAAACCCCTTCAGCTCCT  269

seq1  TGGGTCCTTTCTCTAGCTCCTTCATTGGAGACCCTGTGCCCTGTCCAATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTTTCTCTAGCTCCTTCATTGGAGACCCTGTGCCCTGTCCAATG  319

seq1  GATGGCTGTGAGCATCCACTTCTGTATTTGTCAGGCACTGGAAGATCCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTGTGAGCATCCACTTCTGTATTTGTCAGGCACTGGAAGATCCTA  369

seq1  TATCAGGCTCCTGTCAACAAGTTCTTGTTAGCATCCACCATAGTCAAGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGCTCCTGTCAACAAGTTCTTGTTAGCATCCACCATAGTCAAGCT  419

seq1  ATGTATTGCGAAGAACCATGATGTTCCCATCCTTTTTCCACTCTGTTTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTGCGAAGAACCATGATGTTCCCATCCTTTTTCCACTCTGTTTTT  469

seq1  GGTGCCTATGTACTCTTTTACAGGTGGAACAAAATCTCAGGCTGAAGTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTATGTACTCTTTTACAGGTGGAACAAAATCTCAGGCTGAAGTCT  519

seq1  TTCTTCCACCAACTGCTTGTGTTGAACTGTCTCACCCACTACCATAGCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCACCAACTGCTTGTGTTGAACTGTCTCACCCACTACCATAGCTA  569

seq1  TCCAGACTGTCTCTGAAGGAAGCTCTATGACAGGACTCTGTCCCTCAGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACTGTCTCTGAAGGAAGCTCTATGACAGGACTCTGTCCCTCAGCA  619

seq1  CAGCTTTTTCCTTCTGTTCCCAGTAGTATATTGCAAATGCTATAAAATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTTTCCTTCTGTTCCCAGTAGTATATTGCAAATGCTATAAAATTT  669

seq1  TGCTGGATTTTGTTACATTGGGAATCAGGACAGAAAAGCAGAGTAATTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGATTTTGTTACATTGGGAATCAGGACAGAAAAGCAGAGTAATTTG  719

seq1  CCTGCTAATCTTCTCACCCGACGATGCCATGGACAGAACCCACTAACAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTAATCTTCTCACCCGACGATGCCATGGACAGAACCCACTAACAGG  769

seq1  TAAGTCGGTCCTGTTCCTCAATTCACGTTCTGTTCTTCAGCATTGTTGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCGGTCCTGTTCCTCAATTCACGTTCTGTTCTTCAGCATTGTTGAG  819

seq1  TGGCTGTTCTGTGCAATCAATGCCCTGTTGAGTGTGCTACCTTTCTCAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTCTGTGCAATCAATGCCCTGTTGAGTGTGCTACCTTTCTCAGT  869

seq1  GGTTTGCAATCAACGTACAATACAACTTGAGAAGAAAGAACCTTATCCCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCAATCAACGTACAATACAACTTGAGAAGAAAGAACCTTATCCCC  919

seq1  AAAGTGGGCCATCCCTAGCTTATTTGGTTAATCTATTTTGTTTGACACTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGCCATCCCTAGCTTATTTGGTTAATCTATTTTGTTTGACACTA  969

seq1  ACTAAAGACCATGATGTCCCAACACTGAATTC  1079
      ||||||||||||||||||||||||||||||||
seq2  ACTAAAGACCATGATGTCCCAACACTGAATTC  1001