BAC Information

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BAC

Clone NameB6Ng01-138H21
Chromosome6 (Build37)
Map Location 115,033,486 - 115,181,188
singlet/doubletdoublet
Overlap geneLOC100043420, Syn2
Upstream geneSlc6a11, LOC666491, Slc6a1, Hrh1, Atg7, Vgll4, 1500001M20Rik
Downstream geneTimp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138H21.bB6Ng01-138H21.g
ACCDH937739DH937740
length1,114817
definitionDH937739|Mus musculus domesticus DNA, BAC clone: B6Ng01-138H21, 5' end.DH937740|Mus musculus domesticus DNA, BAC clone: B6Ng01-138H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,033,486 - 115,034,546)(115,180,371 - 115,181,188)
sequence
gaattcctacacttggctcatctgtgcagcctcagtcaggtccagggtag
cctggattaaaggtatacaccatgaaatccagctagaggaaggcttttga
atattttcaataagaagaaataataaacaggcctggggagatggctcagt
aaagtacttacattgcaagtgggaagacctgagttcaataccagctggaa
gcccatgtccataactccatcacgtgggaggcagagcgaggaggatccct
ggagctcactgaccagttcagcctactcggggaagtgccaggctgaggag
agacccttactcaaaccaaaagatgtaaggtacctgagaaacgacatcaa
gattgtcctctgacccttacaaaactgcatgtacacaccagtacacacac
acacacacacacacacacacacacacacacacacacacgatgtcaaatgt
atgaggaagttcggaataagtttattccaacataaacattatgcaatgca
taggtgtacagtaccctataaatatgtacaatttttaggtcttcacttat
cagttaaaaaaataataaaatttgagggctggggagatgggccagccatc
tcagcagagtacttgctgctctggcagaggactggagtttgggtcctagg
acctttgcaggtgtctcgcaatcacctgtaactccagctctaggagatct
aatgctctttttttggtctttgctggcaccagacacgcacatgacacaca
ggcatacatgcaggcaaaacacttatacacataaaataatgttttgttca
aagaaaagataacaacagaagagatgaagtgaaagacccggctgtatgct
caacaccaactacactccaggccctcacagacctgtcctcctttaatccc
tccgacaacccttggaggcctgtattatgatctgcgctttccagacagca
cagaggcccagaggctctttgtactaactcagtgggtaagcacagagcct
gatttaaaatttttaatttattttttattctacttttggtactagggatg
gagcccagagttctacactgagcgaggcacattccagccaagcctctgag
cccaaattcctttt
gaattcctgatgcaagaaatggacacagcttcttacagaattatcaaact
acttccctcctaacaaagtttgaaagtttggaaatgtatttcacctacct
tggttttctcatactatcccttacataagacggcaacagagtaagcactt
agcatggatttctgattgacaatcttataaaataatccagattcataccc
ttgtgctcaatcctaaacagaacccaagatgtacacccttgcagcacaaa
ctaaaaatatctgtattgcctgtgttgtcaatttccccccattgtaacat
tttcttaataagcctagcagctggggatccatgggagtttaacagcttgc
agcttccttaacgggccaggtaataaaacatctccccttattactaaaac
gagcagaggcgtctagatataactcttgttattcaaggaaaagaatatct
ttagtggtgcatgatgggggaggtgggagatggcttgcacccaaaagttt
gagattaacctgggcaacatattaagactttatctcaaaacaaaagaaaa
caaaacaaatgtgggtgggggagctaatgacaacttaataattagcagta
aagacttgctgagaaccaaacactaaatgctttatgtattttaccatatt
tgataatgtctggcatgcagatgctatgaagagaattatgggtatgagag
tgagataagagatggtaacagatgtgtgtgaatatggtcagaacatatat
ccaggtgtgaaagtttcatgcccaaaaccccttattacacataataatat
tactcataaaaataagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_115033486_115034546
seq2: B6Ng01-138H21.b_109_1162

seq1  AGGTATACACCATGAAATCCAGCTAGAGGAAGGCTTTTGAATATTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATACACCATGAAATCCAGCTAGAGGAAGGCTTTTGAATATTTTCAA  50

seq1  TAAGAAGAAATAATAAACAGGCCTGGGGAGATGGCTCAGTAAAGTACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGAAATAATAAACAGGCCTGGGGAGATGGCTCAGTAAAGTACTTA  100

seq1  CATTGCAAGTGGGAAGACCTGAGTTCAATACCAGCTGGAAGCCCATGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAAGTGGGAAGACCTGAGTTCAATACCAGCTGGAAGCCCATGTCC  150

seq1  ATAACTCCATCACGTGGGAGGCAGAGCGAGGAGGATCCCTGGAGCTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCCATCACGTGGGAGGCAGAGCGAGGAGGATCCCTGGAGCTCACT  200

seq1  GACCAGTTCAGCCTACTCGGGGAAGTGCCAGGCTGAGGAGAGACCCTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTTCAGCCTACTCGGGGAAGTGCCAGGCTGAGGAGAGACCCTTAC  250

seq1  TCAAACCAAAAGATGTAAGGTACCTGAGAAACGACATCAAGATTGTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCAAAAGATGTAAGGTACCTGAGAAACGACATCAAGATTGTCCTC  300

seq1  TGACCCTTACAAAACTGCATGTACACACCAGTACACACACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTTACAAAACTGCATGTACACACCAGTACACACACACACACACAC  350

seq1  ACACACACACACACACACACACACACACGATGTCAAATGTATGAGGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACGATGTCAAATGTATGAGGAAGT  400

seq1  TCGGAATAAGTTTATTCCAACATAAACATTATGCAATGCATAGGTGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAATAAGTTTATTCCAACATAAACATTATGCAATGCATAGGTGTACA  450

seq1  GTACCCTATAAATATGTACAATTTTTAGGTCTTCACTTATCAGTTAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCTATAAATATGTACAATTTTTAGGTCTTCACTTATCAGTTAAAAA  500

seq1  AATAATAAAATTTGAGGGCTGGGGAGATGGGCCAGCCATCTCAGCAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAAATTTGAGGGCTGGGGAGATGGGCCAGCCATCTCAGCAGAGT  550

seq1  ACTTGCTGCTCTGGCAGAGGACTGGAGTTTGGGTCCTAGGACCTTTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGCTCTGGCAGAGGACTGGAGTTTGGGTCCTAGGACCTTTGCAG  600

seq1  GTGTCTCGCAATCACCTGTAACTCCAGCTCTAGGAGATCTAATGCTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCGCAATCACCTGTAACTCCAGCTCTAGGAGATCTAATGCTCTTT  650

seq1  TTTTGGTCTTTGCTGGCACCAGACACGCACATGACACACAGGCATACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTCTTTGCTGGCACCAGACACGCACATGACACACAGGCATACATG  700

seq1  CAGGCAAAACACTTATACACATAAAATAATGTTTTGTTCAAAGAAAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAACACTTATACACATAAAATAATGTTTTGTTCAAAGAAAAGAT  750

seq1  AACAACAGAAGAGATGAAGTGAAAGACCCGGCTGTATGCTCAACACCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGAAGAGATGAAGTGAAAGACCCGGCTGTATGCTCAACACCAAC  800

seq1  TACACTCCAGGCCCTCACAGACCTGTCCTCCTTTAATCCCTCCGACAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCCAGGCCCTCACAGACCTGTCCTCCTTTAATCCCTCCGACAACC  850

seq1  CTTGGAGGCCTGTATTATGATCTGCGCTTTCCAGACAGCACAGAGGCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGCCTGTATTATGATCTGCGCTTTCCAGACAGCACAGAGGCCCA  900

seq1  GAGGCTCTTTGTACTAACTCAGTGGGTAAGCAACAGAGCCTGGATTTAAA  950
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  GAGGCTCTTTGTACTAACTCAGTGGGTAAGC-ACAGAGCCT-GATTTAAA  948

seq1  ATTTTTTAATTTA-TTTTTATTCTACTTTTTGGTACTAGGAATGGAGCCC  999
      | ||||||||||| |||||||||||| ||||||||||||| |||||||||
seq2  A-TTTTTAATTTATTTTTTATTCTAC-TTTTGGTACTAGGGATGGAGCCC  996

seq1  AGAGTTCTACCACTGAGCGAGGCACATTCCCAGCCCAAAGCTCTGAGCCC  1049
      ||||||||| |||||||||||||||||| |||| ||||  ||||||||||
seq2  AGAGTTCTA-CACTGAGCGAGGCACATT-CCAG-CCAAGCCTCTGAGCCC  1043

seq1  AATATTCTTTTT  1061
      || |||| ||||
seq2  AA-ATTCCTTTT  1054

seq1: chr6_115180371_115181188
seq2: B6Ng01-138H21.g_66_882 (reverse)

seq1  ACTTATTTTTATGAGTATATATTAGTTATGTGTAATGATGGGTTTT-GGC  49
      ||||||||||||||||| |||||| ||||||||||| | ||||||| |||
seq2  ACTTATTTTTATGAGTA-ATATTA-TTATGTGTAATAAGGGGTTTTGGGC  48

seq1  ATGAAACTTTCACACATGGATATATGTTCTGACCATATTCACACACATCT  99
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGAAACTTTCACACCTGGATATATGTTCTGACCATATTCACACACATCT  98

seq1  GTTACCATCTCTTATCTCACTCTCATACCCATAATTCTCTTCATAGCATC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCATCTCTTATCTCACTCTCATACCCATAATTCTCTTCATAGCATC  148

seq1  TGCATGCCAGACATTATCAAATATGGTAAAATACATAAAGCATTTAGTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCCAGACATTATCAAATATGGTAAAATACATAAAGCATTTAGTGT  198

seq1  TTGGTTCTCAGCAAGTCTTTACTGCTAATTATTAAGTTGTCATTAGCTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTCAGCAAGTCTTTACTGCTAATTATTAAGTTGTCATTAGCTCC  248

seq1  CCCACCCACATTTGTTTTGTTTTCTTTTGTTTTGAGATAAAGTCTTAATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACATTTGTTTTGTTTTCTTTTGTTTTGAGATAAAGTCTTAATA  298

seq1  TGTTGCCCAGGTTAATCTCAAACTTTTGGGTGCAAGCCATCTCCCACCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCCAGGTTAATCTCAAACTTTTGGGTGCAAGCCATCTCCCACCTC  348

seq1  CCCCATCATGCACCACTAAAGATATTCTTTTCCTTGAATAACAAGAGTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCATGCACCACTAAAGATATTCTTTTCCTTGAATAACAAGAGTTA  398

seq1  TATCTAGACGCCTCTGCTCGTTTTAGTAATAAGGGGAGATGTTTTATTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGACGCCTCTGCTCGTTTTAGTAATAAGGGGAGATGTTTTATTAC  448

seq1  CTGGCCCGTTAAGGAAGCTGCAAGCTGTTAAACTCCCATGGATCCCCAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCGTTAAGGAAGCTGCAAGCTGTTAAACTCCCATGGATCCCCAGC  498

seq1  TGCTAGGCTTATTAAGAAAATGTTACAATGGGGGGAAATTGACAACACAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGCTTATTAAGAAAATGTTACAATGGGGGGAAATTGACAACACAG  548

seq1  GCAATACAGATATTTTTAGTTTGTGCTGCAAGGGTGTACATCTTGGGTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACAGATATTTTTAGTTTGTGCTGCAAGGGTGTACATCTTGGGTTC  598

seq1  TGTTTAGGATTGAGCACAAGGGTATGAATCTGGATTATTTTATAAGATTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGGATTGAGCACAAGGGTATGAATCTGGATTATTTTATAAGATTG  648

seq1  TCAATCAGAAATCCATGCTAAGTGCTTACTCTGTTGCCGTCTTATGTAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAGAAATCCATGCTAAGTGCTTACTCTGTTGCCGTCTTATGTAAG  698

seq1  GGATAGTATGAGAAAACCAAGGTAGGTGAAATACATTTCCAAACTTTCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTATGAGAAAACCAAGGTAGGTGAAATACATTTCCAAACTTTCAA  748

seq1  ACTTTGTTAGGAGGGAAGTAGTTTGATAATTCTGTAAGAAGCTGTGTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTAGGAGGGAAGTAGTTTGATAATTCTGTAAGAAGCTGTGTCCA  798

seq1  TTTCTTGCATCAGGAATTC  818
      |||||||||||||||||||
seq2  TTTCTTGCATCAGGAATTC  817