BAC Information

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BAC

Clone NameB6Ng01-138I18
Chromosome6 (Build37)
Map Location 70,755,448 - 70,875,889
singlet/doubletdoublet
Overlap geneEif2ak3, 1700011F03Rik
Upstream geneIgk, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia
Downstream geneLOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138I18.bB6Ng01-138I18.g
ACCDH937777DH937778
length1,103383
definitionDH937777|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I18, 5' end.DH937778|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,874,772 - 70,875,889)(70,755,448 - 70,755,836)
sequence
gaattccagtacagggctacacacaaaacctctttctctgggaaaaaaaa
attaatattcgtgcttctcccctgccttccccatcaaattttggtttgga
gaatctgggatggggcaaggcagtctctattcatcgtcaccacttgagga
gtactggccacatgctaagatcctcactgccaacatttctgtgacttttc
ctcagcctccccttgcctgctctatgttctgaggtgcgagcaggccggct
gaccctaaagtgacttgctggtctgtcaacaccactcccagggaaggtgc
tcttctctctaccttattccaatgtgatggcataaagggagatgctctct
tgagattacacatcggcagccaggtcgagcacgcagagaatgaaggtgtg
acttactgaccaccttaccctttcaacatctaaatggcctgacccagcac
tgaccctggacacatggcccaaaaagcatttgaaagaatttaggaaagtt
gacagaggaaccaggaggcaaaataagctcagataatatgctgcagtgat
ggttgggcgaaatagatctctcagaagcagtgtgctttcagctctttgtg
gcatcaactcctttccattatctctgccatcaggagtagcaatgggacct
tactgaccaccctcaggacacaatcctacgcttattatggggtagagatg
ctgacagctgtcatttccatttcgtttccaagctttttatttttcttatt
tatttgtctggtttttgtttgtttattgtttctcattatggatggttgtg
agccaccatatattgctaggatttaaactcatgacctccagaagagcagt
caattctcttaaccactgagccatctctccagcccttgtttccaagattt
taggcaggaagacctttatctattttatcctcaaagatatcaaattatat
tttactatcttcacgaatgtttttttcttcttctcatggtcctgggcatc
tttccatagcatctctgatgaatatttatttcttatatcactatgtttta
taattgcatgcatctaaatagtgttagtttcttaaagtaaattaggtaca
tac
tttacggttagggacggcaactctgccttcttgtaccactaggtggcagc
aacatctcagttgtggctaccataaacctctgcatgcccctccccccccc
ccccccccccccaatcaggtgtacagaagctgtgctccctggaaaatctc
tttagcctggatcaagtaattgtcagcatccagtttcaaatttcttttct
cttcactagttttctccatctcagagcaagaatcccctttcagagaggtt
tcaagtaaggacatctttccctttgaatatagtaacaatattaaagggtg
ataagtttagtaggcggtaggttataagggcataatcctcattacactta
gaagagagggagaggttgtgtgtgttgggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_70874772_70875889
seq2: B6Ng01-138I18.b_45_1147 (reverse)

seq1  GTATGTACCTAAATCTACTTTTACAGAAACTAACACTAATTTAGATGCAT  50
      |||||||||| ||| ||||||   ||||||||||||| ||||||||||||
seq2  GTATGTACCT-AATTTACTTT--AAGAAACTAACACT-ATTTAGATGCAT  46

seq1  GCAAATTATAAAACATTAGTGATATTTAAAGAAAATAAAATAATTCATCA  100
      || |||||||||||| |||||||||   ||| |||||||   ||||||||
seq2  GC-AATTATAAAACA-TAGTGATAT---AAG-AAATAAA--TATTCATCA  88

seq1  GAAGGATTGCTATGGAAAGATGCCCAGGACCATGAGAAGAAGAAAAAAAC  150
      ||  || |||||||||||||||||||||||||||||||||||||||||||
seq2  GA--GA-TGCTATGGAAAGATGCCCAGGACCATGAGAAGAAGAAAAAAAC  135

seq1  ATTTCGTGAAGATAGTAAAATATAATTTTGATATCTTTGAGGAT-AAATA  199
      | ||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  A-TTCGTGAAGATAGTAAAATATAA-TTTGATATCTTTGAGGATAAAATA  183

seq1  GAT-AAGGTCTTCCTGCCTAAAATCTTGGAAACAAGGGCTGGAGAGATGG  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGGTCTTCCTGCCTAAAATCTTGGAAACAAGGGCTGGAGAGATGG  233

seq1  CTCAGTGGTTAAGAGAATTGACTGCTCTTCTGGAGGTCATGAGTTTAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGTTAAGAGAATTGACTGCTCTTCTGGAGGTCATGAGTTTAAAT  283

seq1  CCTAGCAATATATGGTGGCTCACAACCATCCATAATGAGAAACAATAAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCAATATATGGTGGCTCACAACCATCCATAATGAGAAACAATAAAC  333

seq1  AAACAAAAACCAGACAAATAAATAAGAAAAATAAAAAGCTTGGAAACGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAACCAGACAAATAAATAAGAAAAATAAAAAGCTTGGAAACGAA  383

seq1  ATGGAAATGACAGCTGTCAGCATCTCTACCCCATAATAAGCGTAGGATTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATGACAGCTGTCAGCATCTCTACCCCATAATAAGCGTAGGATTG  433

seq1  TGTCCTGAGGGTGGTCAGTAAGGTCCCATTGCTACTCCTGATGGCAGAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGAGGGTGGTCAGTAAGGTCCCATTGCTACTCCTGATGGCAGAGA  483

seq1  TAATGGAAAGGAGTTGATGCCACAAAGAGCTGAAAGCACACTGCTTCTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAAAGGAGTTGATGCCACAAAGAGCTGAAAGCACACTGCTTCTGA  533

seq1  GAGATCTATTTCGCCCAACCATCACTGCAGCATATTATCTGAGCTTATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTATTTCGCCCAACCATCACTGCAGCATATTATCTGAGCTTATTT  583

seq1  TGCCTCCTGGTTCCTCTGTCAACTTTCCTAAATTCTTTCAAATGCTTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTGGTTCCTCTGTCAACTTTCCTAAATTCTTTCAAATGCTTTTT  633

seq1  GGGCCATGTGTCCAGGGTCAGTGCTGGGTCAGGCCATTTAGATGTTGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATGTGTCCAGGGTCAGTGCTGGGTCAGGCCATTTAGATGTTGAAA  683

seq1  GGGTAAGGTGGTCAGTAAGTCACACCTTCATTCTCTGCGTGCTCGACCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGGTGGTCAGTAAGTCACACCTTCATTCTCTGCGTGCTCGACCTG  733

seq1  GCTGCCGATGTGTAATCTCAAGAGAGCATCTCCCTTTATGCCATCACATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCGATGTGTAATCTCAAGAGAGCATCTCCCTTTATGCCATCACATT  783

seq1  GGAATAAGGTAGAGAGAAGAGCACCTTCCCTGGGAGTGGTGTTGACAGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGGTAGAGAGAAGAGCACCTTCCCTGGGAGTGGTGTTGACAGAC  833

seq1  CAGCAAGTCACTTTAGGGTCAGCCGGCCTGCTCGCACCTCAGAACATAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTCACTTTAGGGTCAGCCGGCCTGCTCGCACCTCAGAACATAGA  883

seq1  GCAGGCAAGGGGAGGCTGAGGAAAAGTCACAGAAATGTTGGCAGTGAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAAGGGGAGGCTGAGGAAAAGTCACAGAAATGTTGGCAGTGAGGA  933

seq1  TCTTAGCATGTGGCCAGTACTCCTCAAGTGGTGACGATGAATAGAGACTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCATGTGGCCAGTACTCCTCAAGTGGTGACGATGAATAGAGACTG  983

seq1  CCTTGCCCCATCCCAGATTCTCCAAACCAAAATTTGATGGGGAAGGCAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCCCATCCCAGATTCTCCAAACCAAAATTTGATGGGGAAGGCAGG  1033

seq1  GGAGAAGCACGAATATTAATTTTTTTTTCCCAGAGAAAGAGGTTTTGTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCACGAATATTAATTTTTTTTTCCCAGAGAAAGAGGTTTTGTGT  1083

seq1  GTAGCCCTGTACTGGAATTC  1118
      ||||||||||||||||||||
seq2  GTAGCCCTGTACTGGAATTC  1103

seq1: chr6_70755448_70755836
seq2: B6Ng01-138I18.g_68_456

seq1  GAATTCTTTACGGTTAGGGACGGCAACTCTGCCTTCTTGTACCACTAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACGGTTAGGGACGGCAACTCTGCCTTCTTGTACCACTAGGT  50

seq1  GGCAGCAACATCTCAGTTGTGGCTACCATAAACCTCTGCATGCCCCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAACATCTCAGTTGTGGCTACCATAAACCTCTGCATGCCCCTCCC  100

seq1  CCCCCCCCCCCCCCCCCCAATCAGGTGTACAGAAGCTGTGCTCCCTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCCCCCAATCAGGTGTACAGAAGCTGTGCTCCCTGGAA  150

seq1  GATCTCTTTAGCCTGGATCAAGTAATTGTCAGCATCCAGTTTCAAATTTC  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTTAGCCTGGATCAAGTAATTGTCAGCATCCAGTTTCAAATTTC  200

seq1  TTTTCTCTTCACTAGTTTTCTCCATCTCAGAGCAAGAATCCCCTTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTCACTAGTTTTCTCCATCTCAGAGCAAGAATCCCCTTTCAGA  250

seq1  GAGGTTTCAAGTAAGGACATCTTTCCCTTTGAATATAGTAACAATATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTCAAGTAAGGACATCTTTCCCTTTGAATATAGTAACAATATTAA  300

seq1  AGGGTGATAAGTTTAGTAGGCGGTAGGTTATAAGGGCATAATCCTCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGATAAGTTTAGTAGGCGGTAGGTTATAAGGGCATAATCCTCATTA  350

seq1  CACTTAGAAGAGAGGGAGAGGTTGTGTGTGTTGGGAGGG  389
      |||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGAAGAGAGGGAGAGGTTGTGTGTGTTGGGAGGG  389