BAC Information

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BAC

Clone NameB6Ng01-139C21
Chromosome6 (Build37)
Map Location 23,654,553 - 23,819,938
singlet/doubletdoublet
Overlap geneCadps2
Upstream geneLOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Rnf133, Rnf148
Downstream geneTas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139C21.bB6Ng01-139C21.g
ACCDH938232DH938233
length7901,062
definitionDH938232|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C21, 5' end.DH938233|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,819,149 - 23,819,938)(23,654,553 - 23,655,624)
sequence
gaattcattgatgagtttccctatggctgcctataattttagtttctttc
aaaaacatgaccaggagctttgaatatcaggatactcaatagactacaat
taggaaatttgcatcgatataagaagtaatttgaaaacaaaattatgaac
acacaattgtaataccttaccttgtgaatattacagagtagttgtcaatg
taattgtaactatgtaacaagttaacatggactcaagaacaagaggtgaa
tgtaaatttctgaaaaagaatataatatgaaatttgtataaaattaatat
caagttcatgtttgtcacatattcttgatttagaaaatatttgaaagaca
cagtttacttatagtaagtccccaaagaggacagttatgagaataagaac
cattatagatgctgcttataacatactaataacataggcctgggtaagac
ctgaaatatataaaaaccaacaaaaactgtcctatgattaagagaccttt
tggaaacccactgcaagagaaggaggataaaaaataaaaattaaaaaaaa
caaaacaagatagcagagtgaactccagaagtaagaaaaaaggaaaccac
gggcagatgagcaaagcagcacataaagaagtgagcacagtggtgcatga
aggatgagagagagaattttaaagatatacagaaacagaatagatgcaga
aagttaattaacagtgtggtgtgctaaataatggcctcaattatctacac
tgataacgcttgctgtgtgtgtgtggggggggatattggg
gaattcactaagaaatagaaataacatgctgaaatcattattcctttgga
ggatgatcacaccctctattctcgtatttgaatctccaccccactctcac
ctagcaaaaaagtaaaattaattcagcaaccacaaaggatcagaaaacaa
tccatgcaggggaatactctttcatcagttagccagtcagtttatgcatt
agggaaagataatggagtcttctacttaggttattacatttctatttata
tctagatcccccacaagttatatggcattactagggctccttaatctcag
gatctcaacttcatcatctccgtaacaaggacaacagcaatgataacatt
taacaagattgttatattcaacaagatacttgaaagagaattctgtatta
aatggttaataactgccatttggttgctttacttctgcaactacaacaac
agggaaaatagtagaatcttagaacggatgccaaaggacagataataaat
gggcgtggtgctgtactactctccctggtaaacataaactttggtatctg
ccagttgcactgtatgctaagtctaagttcatatacgttctaagtttgaa
atccattcctaattctaataccacagaaaatatatataagaacacagaac
taaagtcttcattagtcgtgtgctgagaaaaaaatggatattaagattaa
aataagttaagaaaacctttatctgtttctttgaatgtgttttactaagg
accctagaatggttctcaacctataggctgcaacccccttgggtggaatc
aaatgaccctgtcacacaagttgactaagaccataagaaacacaaatgtt
tacattacaattcataacaatgcaaatttacagttataatgtagcaacaa
aataattttatggttgggggtcacacacatgaagatctgtataaaagggt
tgcagcattaggaagttgagacactgccctagaataaaaaatgatgggat
ctgtatctcctgcaaatcagaaatgactgcatcacgaagggatcagcact
gtaataagctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_23819149_23819938
seq2: B6Ng01-139C21.b_43_832 (reverse)

seq1  CCCAATATCCCCCCCCACACACACACAGCAAGCGTTATCAGTGTAGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATATCCCCCCCCACACACACACAGCAAGCGTTATCAGTGTAGATAA  50

seq1  TTGAGGCCATTATTTAGCACACCACACTGTTAATTAACTTTCTGCATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCATTATTTAGCACACCACACTGTTAATTAACTTTCTGCATCTA  100

seq1  TTCTGTTTCTGTATATCTTTAAAATTCTCTCTCTCATCCTTCATGCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTCTGTATATCTTTAAAATTCTCTCTCTCATCCTTCATGCACCA  150

seq1  CTGTGCTCACTTCTTTATGTGCTGCTTTGCTCATCTGCCCGTGGTTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCACTTCTTTATGTGCTGCTTTGCTCATCTGCCCGTGGTTTCCT  200

seq1  TTTTTCTTACTTCTGGAGTTCACTCTGCTATCTTGTTTTGTTTTTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTACTTCTGGAGTTCACTCTGCTATCTTGTTTTGTTTTTTTTAA  250

seq1  TTTTTATTTTTTATCCTCCTTCTCTTGCAGTGGGTTTCCAAAAGGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTTTATCCTCCTTCTCTTGCAGTGGGTTTCCAAAAGGTCTCT  300

seq1  TAATCATAGGACAGTTTTTGTTGGTTTTTATATATTTCAGGTCTTACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATAGGACAGTTTTTGTTGGTTTTTATATATTTCAGGTCTTACCCA  350

seq1  GGCCTATGTTATTAGTATGTTATAAGCAGCATCTATAATGGTTCTTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTATGTTATTAGTATGTTATAAGCAGCATCTATAATGGTTCTTATTC  400

seq1  TCATAACTGTCCTCTTTGGGGACTTACTATAAGTAAACTGTGTCTTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACTGTCCTCTTTGGGGACTTACTATAAGTAAACTGTGTCTTTCAA  450

seq1  ATATTTTCTAAATCAAGAATATGTGACAAACATGAACTTGATATTAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTAAATCAAGAATATGTGACAAACATGAACTTGATATTAATTT  500

seq1  TATACAAATTTCATATTATATTCTTTTTCAGAAATTTACATTCACCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAATTTCATATTATATTCTTTTTCAGAAATTTACATTCACCTCTT  550

seq1  GTTCTTGAGTCCATGTTAACTTGTTACATAGTTACAATTACATTGACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGAGTCCATGTTAACTTGTTACATAGTTACAATTACATTGACAAC  600

seq1  TACTCTGTAATATTCACAAGGTAAGGTATTACAATTGTGTGTTCATAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTAATATTCACAAGGTAAGGTATTACAATTGTGTGTTCATAATT  650

seq1  TTGTTTTCAAATTACTTCTTATATCGATGCAAATTTCCTAATTGTAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCAAATTACTTCTTATATCGATGCAAATTTCCTAATTGTAGTCT  700

seq1  ATTGAGTATCCTGATATTCAAAGCTCCTGGTCATGTTTTTGAAAGAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTATCCTGATATTCAAAGCTCCTGGTCATGTTTTTGAAAGAAACT  750

seq1  AAAATTATAGGCAGCCATAGGGAAACTCATCAATGAATTC  790
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATAGGCAGCCATAGGGAAACTCATCAATGAATTC  790

seq1: chr6_23654553_23655624
seq2: B6Ng01-139C21.g_67_1128

seq1  GAATTCACTAAGAAATAGAAATAACATGCTGAAATCATTATTCCTTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAGAAATAGAAATAACATGCTGAAATCATTATTCCTTTGGA  50

seq1  GGATGATCACACCCTCTATTCTCGTATTTGAATCTCCACCCCACTCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATCACACCCTCTATTCTCGTATTTGAATCTCCACCCCACTCTCAC  100

seq1  CTAGCAAAAAAGTAAAATTAATTCAGCAACCACAAAGGATCAGAAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAAAAAGTAAAATTAATTCAGCAACCACAAAGGATCAGAAAACAA  150

seq1  TCCATGCAGGGGAATACTCTTTCATCAGTTAGCCAGTCAGTTTATGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCAGGGGAATACTCTTTCATCAGTTAGCCAGTCAGTTTATGCATT  200

seq1  AGGGAAAGATAATGGAGTCTTCTACTTAGGTTATTACATTTCTATTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGATAATGGAGTCTTCTACTTAGGTTATTACATTTCTATTTATA  250

seq1  TCTAGATCCCCCACAAGTTATATGGCATTACTAGGGCTCCTTAATCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATCCCCCACAAGTTATATGGCATTACTAGGGCTCCTTAATCTCAG  300

seq1  GATCTCAACTTCATCATCTCCGTAACAAGGACAACAGCAATGATAACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAACTTCATCATCTCCGTAACAAGGACAACAGCAATGATAACATT  350

seq1  TAACAAGATTGTTATATTCAACAAGATACTTGAAAGAGAATTCTGTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGATTGTTATATTCAACAAGATACTTGAAAGAGAATTCTGTATTA  400

seq1  AATGGTTAATAACTGCCATTTGGTTGCTTTACTTCTGCAACTACAACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTAATAACTGCCATTTGGTTGCTTTACTTCTGCAACTACAACAAC  450

seq1  AGGGAAAATAGTAGAATCTTAGAACGGATGCCAAAGGACAGATAATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAATAGTAGAATCTTAGAACGGATGCCAAAGGACAGATAATAAAT  500

seq1  GGGCGTGGTGCTGTACTACTCTCCCTGGTAAACATAAACTTTGGTATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTGGTGCTGTACTACTCTCCCTGGTAAACATAAACTTTGGTATCTG  550

seq1  CCAGTTGCACTGTATGCTAAGTCTAAGTTCATATACGTTCTAAGTTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGCACTGTATGCTAAGTCTAAGTTCATATACGTTCTAAGTTTGAA  600

seq1  ATCCATTCCTAATTCTAATACCACAGAAAATATATATAAGAACACAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTCCTAATTCTAATACCACAGAAAATATATATAAGAACACAGAAC  650

seq1  TAAAGTCTTCATTAGTCGTGTGCTGAGAAAAAAATGGATATTAAGATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCTTCATTAGTCGTGTGCTGAGAAAAAAATGGATATTAAGATTAA  700

seq1  AATAAGTTAAGAAAACCTTTATCTGTTTCTTTGAATGTGTTTTACTAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTAAGAAAACCTTTATCTGTTTCTTTGAATGTGTTTTACTAAGG  750

seq1  ACCCTAGAATGGTTCTCAACCTATAGGCTGCAACCCCCTTGGGTGGAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGAATGGTTCTCAACCTATAGGCTGCAACCCCCTTGGGTGGAATC  800

seq1  AAATGACCCTGTCACACAAGTTGACTAAGACCATAAGAAACACAAATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCCTGTCACACAAGTTGACTAAGACCATAAGAAACACAAATGTT  850

seq1  TACATTACAATTCATAACAATGCAAATTTACAGTTATAATGTAGCAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTACAATTCATAACAATGCAAATTTACAGTTATAATGTAGCAACAA  900

seq1  AATAATTTTATGGTTGGGGGTCACCACAACATGAAGATCTGTATAAAAGG  950
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  AATAATTTTATGGTTGGGGGTCA-CAC-ACATGAAGATCTGTATAAAAGG  948

seq1  GTTGCAGCATTAGGAAGGTTGAGAACCACTGCCCTAGAATAAAAAATGAA  1000
      |||||||||||||||| |||||||  |||||||||||||||||||||| |
seq2  GTTGCAGCATTAGGAA-GTTGAGA--CACTGCCCTAGAATAAAAAATG-A  994

seq1  TGGGATCCTGTATCTCCTGCAAATCAGAAATGACCTGCATCACAGAGGGA  1050
      |||||| |||||||||||||||||||||||||| ||||||||| || || 
seq2  TGGGAT-CTGTATCTCCTGCAAATCAGAAATGA-CTGCATCAC-GAAGGG  1041

seq1  ATCAGCACTGTAAATAAGCTTA  1072
      ||||||||||| ||||||||||
seq2  ATCAGCACTGT-AATAAGCTTA  1062