BAC Information

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BAC

Clone NameB6Ng01-139L13
Chromosome6 (Build37)
Map Location 39,355,554 - 39,484,791
singlet/doubletdoublet
Overlap geneMkrn1, ENSMUSG00000068601, Dennd2a
Upstream geneTtc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19
Downstream geneAdck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139L13.bB6Ng01-139L13.g
ACCDH938636DH938637
length1,162249
definitionDH938636|Mus musculus domesticus DNA, BAC clone: B6Ng01-139L13, 5' end.DH938637|Mus musculus domesticus DNA, BAC clone: B6Ng01-139L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,355,554 - 39,356,707)(39,484,543 - 39,484,791)
sequence
gaattcattttattgtagttcaaaatttttcttttacttcatctttaaat
cttaaataacccaatctaatgtgttgacagtaggttaagctcaaacagaa
aaggctgacactgagttcactgtggcctgtcatttagccctttgattgca
gtttacagggtcctcacaatacttactacggccacagtagggctgcccag
ggacaaactcaatggcattcacccagtcctctgaacctgctcctacagtt
ggaaagcttgggtttcgtgactcagcttcgcctgaattcatttcagcaag
tgatccaacaccagaagagagacttgaggaagcagcgagggatggttttg
cactcagatcagtagcagtcacttcttcctgtttcagtggcttgctgtgt
tcgtatctgacagagaaaagtaagcagttacaatcgtgctacatggagct
cccagactcttttcaaacttcagtgtgaacatgagcagggagcacctgtc
aagacttattcctgggttggaaagatggctcagcggttaagagcacttcc
agaggtcttccaggtccagaggtcctgagttcaattcctagcaaacacag
ggtggctcacaacatctgtaatgggctctgatacactattctagtgtgtg
gctaaagacagcagtagtgtactcaatataaatagaaaaaataaatctta
aaaaaaaaaaaaaaagacttattcctatttaagtgtatctgtatgtgtgg
ggtgtccagagaggccagaagacagcatttagatccccggggccaagtta
acaggcaactataagctgcctgatatgagtgctgggaaaaacagatccag
gtccctccaacaaacacttttaactgctaagccatctctccaaccctaga
taaccttgagatagagggtttgcctatgtaacctcaggctagcttcgcac
ttcattatatagctccatgttgtctgtctcaaatgcatgggatcctcttg
ccttaaggcacctaaaatgctgggctttacgggcataccacaaacaccaa
cctttgtggcatcttaggcaaggactgagctgtgttcatagcctgacatc
taagtctgagtgtgactcatgaatccaccgtggggtagacccttcactat
gatgtcacgctg
tcgcagattcattttctcgtcagataaatggcagagccttgatctctgag
gaaatagagataggaaataaaacataattcctgtcatgtctgagaacaga
gagaagcaagagtggtttaaatatttaggagtttaaagaaagttagaatc
tgactcttaccagtttgtgaacctgcgctgcaccaaaaaaaaaaaaaaaa
aaaaaaaagacgtgtacttttttttggagggcggggggttggttggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_39355554_39356707
seq2: B6Ng01-139L13.b_47_1208

seq1  GAATTCATTTTATTGTAGTTCAAAATTTTTCTTTTACTTCATCTTTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTATTGTAGTTCAAAATTTTTCTTTTACTTCATCTTTAAAT  50

seq1  CTTAAATAACCCAATCTAATGTGTTGACAGTAGGTTAAGCTCAAACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATAACCCAATCTAATGTGTTGACAGTAGGTTAAGCTCAAACAGAA  100

seq1  AAGGCTGACACTGAGTTCACTGTGGCCTGTCATTTAGCCCTTTGATTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGACACTGAGTTCACTGTGGCCTGTCATTTAGCCCTTTGATTGCA  150

seq1  GTTTACAGGGTCCTCACAATACTTACTACGGCCACAGTAGGGCTGCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAGGGTCCTCACAATACTTACTACGGCCACAGTAGGGCTGCCCAG  200

seq1  GGACAAACTCAATGGCATTCACCCAGTCCTCTGAACCTGCTCCTACAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAACTCAATGGCATTCACCCAGTCCTCTGAACCTGCTCCTACAGTT  250

seq1  GGAAAGCTTGGGTTTCGTGACTCAGCTTCGCCTGAATTCATTTCAGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCTTGGGTTTCGTGACTCAGCTTCGCCTGAATTCATTTCAGCAAG  300

seq1  TGATCCAACACCAGAAGAGAGACTTGAGGAAGCAGCGAGGGATGGTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAACACCAGAAGAGAGACTTGAGGAAGCAGCGAGGGATGGTTTTG  350

seq1  CACTCAGATCAGTAGCAGTCACTTCTTCCTGTTTCAGTGGCTTGCTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGATCAGTAGCAGTCACTTCTTCCTGTTTCAGTGGCTTGCTGTGT  400

seq1  TCGTATCTGACAGAGAAAAGTAAGCAGTTACAATCGTGCTACATGGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATCTGACAGAGAAAAGTAAGCAGTTACAATCGTGCTACATGGAGCT  450

seq1  CCCAGACTCTTTTCAAACTTCAGTGTGAACATGAGCAGGGAGCACCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTCTTTTCAAACTTCAGTGTGAACATGAGCAGGGAGCACCTGTC  500

seq1  AAGACTTATTCCTGGGTTGGAAAGATGGCTCAGCGGTTAAGAGCACTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTATTCCTGGGTTGGAAAGATGGCTCAGCGGTTAAGAGCACTTCC  550

seq1  AGAGGTCTTCCAGGTCCAGAGGTCCTGAGTTCAATTCCTAGCAAACACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCTTCCAGGTCCAGAGGTCCTGAGTTCAATTCCTAGCAAACACAG  600

seq1  GGTGGCTCACAACATCTGTAATGGGCTCTGATACACTATTCTAGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCACAACATCTGTAATGGGCTCTGATACACTATTCTAGTGTGTG  650

seq1  GCTAAAGACAGCAGTAGTGTACTCAATATAAATAGAAAAAATAAATCTT-  699
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTAAAGACAGCAGTAGTGTACTCAATATAAATAGAAAAAATAAATCTTA  700

seq1  AAAAAAAAAAAAAAAGACTTATTCCTATTTAAGTGTATCTGTATGTGT-G  748
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAAAAAAAAAAAAAGACTTATTCCTATTTAAGTGTATCTGTATGTGTGG  750

seq1  GGTGTCCAGAGAGGCCAGAAGACAGCATTTAGATCCCCGGGGCCAAAGTT  798
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGTGTCCAGAGAGGCCAGAAGACAGCATTTAGATCCCCGGGGCC-AAGTT  799

seq1  AACAGGCAACTATAAGCTGCCTGATATGAGTGCTGGGAAAAACAGATCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCAACTATAAGCTGCCTGATATGAGTGCTGGGAAAAACAGATCCA  849

seq1  GGTCCCTCCAACAAACACTCTTAACTGCTAAGCCATCTCTCCAACCCCTA  898
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  GGTCCCTCCAACAAACACTTTTAACTGCTAAGCCATCTCTCCAA-CCCTA  898

seq1  GATAACCTTGAGATAGAGGGTTTGCCTATGTAA-CTCAGGCTAGCTTCGC  947
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GATAACCTTGAGATAGAGGGTTTGCCTATGTAACCTCAGGCTAGCTTCGC  948

seq1  AC-TCATTATATAGCT-CATGTTGTCTGTCTTCAAATGCAT-GGATCCTC  994
      || ||||||||||||| ||||||||||||| |||||||||| ||||||||
seq2  ACTTCATTATATAGCTCCATGTTGTCTGTC-TCAAATGCATGGGATCCTC  997

seq1  CTGCCTTAA-GCA-CTTAAATGCTGGGC-TTACGGGCATACCAACAAACC  1041
       |||||||| ||| || ||||||||||| ||||||||||||| |||||| 
seq2  TTGCCTTAAGGCACCTAAAATGCTGGGCTTTACGGGCATACC-ACAAACA  1046

seq1  ACAACC-TTGT-GCATC-TAGGCAAGGACTGAGCTGTGTCCATAGCCTGA  1088
       ||||| |||| ||||| ||||||||||||||||||||| ||||||||||
seq2  CCAACCTTTGTGGCATCTTAGGCAAGGACTGAGCTGTGTTCATAGCCTGA  1096

seq1  CATCTAAGTCTGAAGTGGAGCTCATGACT-CAGCGTGTGTAGGAACCCTC  1137
      |||||||||||| ||||   ||||||| | || |||| |   || || ||
seq2  CATCTAAGTCTG-AGTGTGACTCATGAATCCACCGTGGGGTAGACCCTTC  1145

seq1  ACTATGATGTCACGCTG  1154
      |||||||||||||||||
seq2  ACTATGATGTCACGCTG  1162

seq1: chr6_39484543_39484791
seq2: B6Ng01-139L13.g_76_324 (reverse)

seq1  AAACCAACCAACCCCCCGCCCTCCAAAAAAAAGTACACGTCTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAACCAACCCCCCGCCCTCCAAAAAAAAGTACACGTCTTTTTTTTT  50

seq1  TTTTTTTTTTTTTTTGGTGCAGCGCAGGTTCACAAACTGGTAAGAGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTGGTGCAGCGCAGGTTCACAAACTGGTAAGAGTCAG  100

seq1  ATTCTAACTTTCTTTAAACTCCTAAATATTTAAACCACTCTTGCTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAACTTTCTTTAAACTCCTAAATATTTAAACCACTCTTGCTTCTCT  150

seq1  CTGTTCTCAGACATGACAGGAATTATGTTTTATTTCCTATCTCTATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCAGACATGACAGGAATTATGTTTTATTTCCTATCTCTATTTCC  200

seq1  TCAGAGATCAAGGCTCTGCCATTTATCTGACGAGAAAATGAATCTGCGA  249
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATCAAGGCTCTGCCATTTATCTGACGAGAAAATGAATCTGCGA  249