BAC Information

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BAC

Clone NameB6Ng01-140D02
ChromosomeY (Build37)6 (Build37)
Map Location 1,120,586 - 1,121,008123,847,201 - 123,847,747
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140D02.bB6Ng01-140D02.g
ACCDH938989DH938990
length986968
definitionDH938989|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D02, 5' end.DH938990|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,586 - 1,121,008)(123,847,201 - 123,847,747)
sequence
gaattctttgttcagttctgagccccattttttaatgaggttatttgatt
ttctgaagtccaccttcttgagttctttttttttttccattttttattag
gtatttcgctcatttacatttgcaatgctataccaaaagtcccccatagc
cacccaccccctctcccctacccacccactccccttttatggccctggcg
ttcccctgtactggggcatataaagtttgcgtgtccaatgggcctctctt
tccagtgatggccgactaggccatcttttgatacatatgcagctagagtc
aagagctccggggtactggttagttcataatgttgttccacctatagggt
tgcagatccctttagcttctttggtactttctctagctccttcattgggg
gccatgtgatccatccaatagccgactgtgagcatccacttctatgtttg
ctaggcccaggcatactctgacaagagacagctatatcagggtcctttca
gcataatcttgctagtgtatgcaatggtgtcagcatttggaagctgatta
tgggatggatccccggatatgctagtatctacatggtccatccttttatc
tcagctccaaactttgtctctgtaactccttccaagggtgttttgttccc
tcttctaaggaggggcatagtgttcacacttcagtcttcatttttcttga
gtttcatgttttaggaaattgtatcttatatcttgggtatcctaggtttt
ggactaatatccacttatcagtgaatacatattgtgtgagttcctttgtg
aatgtgttacctcactcaggatgatgccctccaggtcgatccatttggat
aggaatttcataaattcattctttttaatagctgagtagtactccattgt
gtagatgtaccacattttctgtatccattcctctgttgagggcatctggg
ttccttccagcttctggctattataaataaggctgc
gaattcttccttaagagaagacagttctgatgtgtacacaaataaagatt
ctttttattatttattttatttatttacattcaaatgttgtcccccttcc
agtttccccccttccctttgccttctagagggttttcctcagcccatcca
ctcccacctcctccctctaacatccaacatcttcctacggtgttgaaatc
cccttcagcctcttcagtccttacactaactcttccattggagttccagg
gctcagtccaatggttcactgtaagtgtctgcatctgtctcaggtgagtg
ctggcagagcttcacataggacagctatgccaggctcctgtatgtaagca
catcttggcatcagcagtagtttcagggttcggtgtttgtgcctgggatg
tatcccaaggtaggaattttattggttggcctttctttcagtctctgatc
caacttttgtccctgctttttcttggggcaagaacaatctgagttaaaat
ttttgaagattggtgggtggccccatgtctcaactagtactcatgtctat
gaactggaggtgttctccacaggttctttctccttgttgttgggcatttc
agtgagtgtcatttccactgggtcctgggatcctccctcattctcttgtc
tggaatattctagtggttcccccattccctaccccatactgctacatatt
actatacaatctcctggctctctgggcttctctcctgtcttccaccataa
ctgaccagcccaggtccctatgtcatttggggatgggttacctcactcag
gatgatattttctagttccatctatttccttgcaaatttgtgatgtattc
atttttaatagaaaagtagtaaatcattctgtctatggacctcattttct
gtctccagtcttctgttgagggacatttggattgtgtctagcatctggct
atatataaacagcttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120586_1121008
seq2: B6Ng01-140D02.b_124_546

seq1  TTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATG  50
      |||||||||||||||||||||||||||||  ||||||||||||| |||||
seq2  TTTTTTTTTCCATTTTTTATTAGGTATTTCGCTCATTTACATTTGCAATG  50

seq1  CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  100
      ||||||||||||||||||||| |||||||||||| ||||||| |||||||
seq2  CTATACCAAAAGTCCCCCATAGCCACCCACCCCCTCTCCCCTACCCACCC  100

seq1  ACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTT  150
      ||||||| ||| |||||||||  |||||||||||||||||||||||||||
seq2  ACTCCCCTTTTATGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTT  150

seq1  TGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  200
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  200

seq1  TTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCA  250
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCA  250

seq1  TAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTAC  300
      ||| ||||||||||||||||||||| |||||||||||||| ||| | |||
seq2  TAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTTCTTTGGTAC  300

seq1  TTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACT  350
      |||||||||||||| ||||||| ||| | ||||||||||| |||| ||||
seq2  TTTCTCTAGCTCCTTCATTGGGGGCCATGTGATCCATCCAATAGCCGACT  350

seq1  GTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAG  400
      |||||||||||||||| |||||||| ||||| |||||| ||| |||||||
seq2  GTGAGCATCCACTTCTATGTTTGCTAGGCCCAGGCATACTCTGACAAGAG  400

seq1  ACAGCTACATCTGCCTCCTTTCA  423
      ||||||| ||| |  ||||||||
seq2  ACAGCTATATCAGGGTCCTTTCA  423

seq1: chr6_123847201_123847747
seq2: B6Ng01-140D02.g_68_614 (reverse)

seq1  GACATGAGTACTAGTTGAGACATGGGGCCACCCACCAATCTTCAAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGTACTAGTTGAGACATGGGGCCACCCACCAATCTTCAAAAATT  50

seq1  TTAACTCAGATTGTTCTTGCCAAAAGAAAAAGCAGGGACAAAAGTTGGAT  100
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  TTAACTCAGATTGTTCTTGCCCCAAGAAAAAGCAGGGACAAAAGTTGGAT  100

seq1  CAGAGACTGAAAGAAAGGCCAACCAATAAAATTCCTACCTTGGGATACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTGAAAGAAAGGCCAACCAATAAAATTCCTACCTTGGGATACAT  150

seq1  CCCAGGCACAAACACCGAACCCTGAAACTACTGCTGATGCCAAGATGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCACAAACACCGAACCCTGAAACTACTGCTGATGCCAAGATGTGC  200

seq1  TTACATACAGGAGCCTGGCATAGCTGTCCTATGTGAAGCTCTGCCAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATACAGGAGCCTGGCATAGCTGTCCTATGTGAAGCTCTGCCAGCAC  250

seq1  TCACCTGAGACAGATGCAGACACTTACAGTGAACCATTGGACTGAGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAGACAGATGCAGACACTTACAGTGAACCATTGGACTGAGCCCT  300

seq1  GGAACTCCAATGGAAGAGTTAGTGTAAGGACTGAAGAGGCTGAAGGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCCAATGGAAGAGTTAGTGTAAGGACTGAAGAGGCTGAAGGGGAT  350

seq1  TTCAACACCGTAGGAAGATGTTGGATGTTAGAGGGAGGAGGTGGGAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACCGTAGGAAGATGTTGGATGTTAGAGGGAGGAGGTGGGAGTGG  400

seq1  ATGGGCTGAGGAAAACCCTCTAGAAGGCAAAGGGAAGGGGGGAAACTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGAGGAAAACCCTCTAGAAGGCAAAGGGAAGGGGGGAAACTGGA  450

seq1  AGGGGGACAACATTTGAATGTAAATAAATAAAATAAATAATAAAAAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGACAACATTTGAATGTAAATAAATAAAATAAATAATAAAAAGAAT  500

seq1  CTTTATTTGTGTACACATCAGAACTGTCTTCTCTTAAGGAAGAATTC  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTGTGTACACATCAGAACTGTCTTCTCTTAAGGAAGAATTC  547