BAC Information

Click to search

BAC

Clone NameB6Ng01-140F22
Chromosome6 (Build37)
Map Location 54,097,227 - 54,286,257
singlet/doubletdoublet
Overlap geneLOC666305, Chn2, LOC100042056, Prr15
Upstream geneLOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik, Cpvl
Downstream geneEG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140F22.bB6Ng01-140F22.g
ACCDH939119DH939120
length7001,119
definitionDH939119|Mus musculus domesticus DNA, BAC clone: B6Ng01-140F22, 5' end.DH939120|Mus musculus domesticus DNA, BAC clone: B6Ng01-140F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,285,559 - 54,286,257)(54,097,227 - 54,098,347)
sequence
gaattccagcagcatgtcctgggcagcatcatgactacttctctatcaac
tgaggtcatgattttgtcctttctagtaagaatttagagggttggaggga
aggagagatctgtccttccatggcagcccaaaggctggaggcatctcatt
tacatgacaccctaacttaactcttaagttctgatatttcaaatacctgt
gatggggaatagttctttgcattaggtgcccaggtttcttgttactgtgt
ggtttctctcttctaatggactctgccttttcacaatcttcagaaaatca
tctgccagccaaaaccagcctgcttcctgagagagaaaagaaagaccatg
accctgctaaaaactattgatatttccactccttgcatgctactctggga
ttttgaaggcaccagggacctgcactgtccctttaaatttccctgaactc
cccagctcaaagggtgggagacgaatgatcatatccatgagatacagtgg
ctggtagtgggtagcacaggctggaaagcaatcaagagtctcaggaaagt
ggccagcaatgctgaaagaaaagggctgtgagcgtggaatggtatgttag
ctgactttgtcactgtgacgatgtgtgtgaaataaatctagttataagga
agattagttttagttcactgtatgtgtgtatgtgtgtgtgtgtgtggtgt

gaattctttgctgaggtccctcttgtctgctccacttttactatgccccc
tctgtgtagtttttacctggaaagaagtgactggtatttatctggctttt
tcctttttatggaggcgaggctggcacccaggcatcaccaggctcattcc
cttataatctgtctcatttattatctctggaatcagcttgtagctgttag
agagatcctctactccactcaccccaacccggcttcaaaacatgcctttc
ttctagcccaactcttatggatcagactttcttcaaaggctctgcaagga
agggtcctctgaactgggtacaacttgtctggtatttgagtttcaaactc
atttggaccatttgggtgtccttatccatccagttcttcttgccttgggt
tctgtttcctttttggtcattgttgctttccaaatgttgttctaggcagg
gaagcctagaaacaaggcagggactttatccttctctgaaggtccctcag
catcctatcaaggatgccaacagaatggagacttctgatatctggtccca
accacagcaaactgtccaaggcctcttctgctttttatgtgatcctttag
ctaatagctatcagagagaggcagaggcgaaggaagtccaatgtgtggtt
tagtgactggattgaaatactgcagctctccaggatgctgtctgttgttc
caccaagttgagaaacacatgttacctgtctcattctgatgggaatgaat
tttctatcctggagtcctgtttgcaaggaagatgtgagaaaaggcctgag
agaaagaaacttggaattagaaattagtctgtcagacttgtcattggtta
cccactaataaatagtcccaggctgcttgtgcccttttctgtaaatcaag
actggccagtcaacttcagagaactgggaagcccttcccaccactggtcc
ttctcctgcaggtagcctcatttgccaataatggccccttctatggacca
tactttcttctacttcgaggaaagaaggatggcctgtctgtaggttctag
gtgaccacgctgtacagaaagtaaaggcaggctcgggagtgcatccatct
tccacttgccataaatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_54285559_54286257
seq2: B6Ng01-140F22.b_45_744 (reverse)

seq1  ACACCACACACACACACACATACACACATACAGTGAACTAAAACTAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACACACACACACACATACACACATACAGTGAACTAAAACTAATCT  50

seq1  TCCTTATAACTAGA-TTATTTCACACACATCGTCACAGTGACAAAGTCAG  99
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCTTATAACTAGATTTATTTCACACACATCGTCACAGTGACAAAGTCAG  100

seq1  CTAACATACCATTCCACGCTCACAGCCCTTTTCTTTCAGCATTGCTGGCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATACCATTCCACGCTCACAGCCCTTTTCTTTCAGCATTGCTGGCC  150

seq1  ACTTTCCTGAGACTCTTGATTGCTTTCCAGCCTGTGCTACCCACTACCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTGAGACTCTTGATTGCTTTCCAGCCTGTGCTACCCACTACCAG  200

seq1  CCACTGTATCTCATGGATATGATCATTCGTCTCCCACCCTTTGAGCTGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTATCTCATGGATATGATCATTCGTCTCCCACCCTTTGAGCTGGG  250

seq1  GAGTTCAGGGAAATTTAAAGGGACAGTGCAGGTCCCTGGTGCCTTCAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAGGGAAATTTAAAGGGACAGTGCAGGTCCCTGGTGCCTTCAAAA  300

seq1  TCCCAGAGTAGCATGCAAGGAGTGGAAATATCAATAGTTTTTAGCAGGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGTAGCATGCAAGGAGTGGAAATATCAATAGTTTTTAGCAGGGT  350

seq1  CATGGTCTTTCTTTTCTCTCTCAGGAAGCAGGCTGGTTTTGGCTGGCAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTTTCTTTTCTCTCTCAGGAAGCAGGCTGGTTTTGGCTGGCAGA  400

seq1  TGATTTTCTGAAGATTGTGAAAAGGCAGAGTCCATTAGAAGAGAGAAACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCTGAAGATTGTGAAAAGGCAGAGTCCATTAGAAGAGAGAAACC  450

seq1  ACACAGTAACAAGAAACCTGGGCACCTAATGCAAAGAACTATTCCCCATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTAACAAGAAACCTGGGCACCTAATGCAAAGAACTATTCCCCATC  500

seq1  ACAGGTATTTGAAATATCAGAACTTAAGAGTTAAGTTAGGGTGTCATGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTATTTGAAATATCAGAACTTAAGAGTTAAGTTAGGGTGTCATGTA  550

seq1  AATGAGATGCCTCCAGCCTTTGGGCTGCCATGGAAGGACAGATCTCTCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATGCCTCCAGCCTTTGGGCTGCCATGGAAGGACAGATCTCTCCT  600

seq1  TCCCTCCAACCCTCTAAATTCTTACTAGAAAGGACAAAATCATGACCTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCAACCCTCTAAATTCTTACTAGAAAGGACAAAATCATGACCTCA  650

seq1  GTTGATAGAGAAGTAGTCATGATGCTGCCCAGGACATGCTGCTGGAATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATAGAGAAGTAGTCATGATGCTGCCCAGGACATGCTGCTGGAATTC  700

seq1: chr6_54097227_54098347
seq2: B6Ng01-140F22.g_67_1185

seq1  GAATTCTTTGCTGAGGTCCCTCTTGTCTGCTCCACTTTTACTATGCCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTGAGGTCCCTCTTGTCTGCTCCACTTTTACTATGCCCCC  50

seq1  TCTGTGTAGTTTTTACCTGGAAAGAAGTGACTGGTATTTATCTGGCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAGTTTTTACCTGGAAAGAAGTGACTGGTATTTATCTGGCTTTT  100

seq1  TCCTTTTTATGGAGGCGAGGCTGGCACCCAGGCATCACCAGGCTCATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTATGGAGGCGAGGCTGGCACCCAGGCATCACCAGGCTCATTCC  150

seq1  CTTATAATCTGTCTCATTTATTATCTCTGGAATCAGCTTGTAGCTGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAATCTGTCTCATTTATTATCTCTGGAATCAGCTTGTAGCTGTTAG  200

seq1  AGAGATCCTCTACTCCACTCACCCCAACCCGGCTTCAAAACATGCCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCTCTACTCCACTCACCCCAACCCGGCTTCAAAACATGCCTTTC  250

seq1  TTCTAGCCCAACTCTTATGGATCAGACTTTCTTCAAAGGCTCTGCAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCCCAACTCTTATGGATCAGACTTTCTTCAAAGGCTCTGCAAGGA  300

seq1  AGGGTCCTCTGAACTGGGTACAACTTGTCTGGTATTTGAGTTTCAAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTCTGAACTGGGTACAACTTGTCTGGTATTTGAGTTTCAAACTC  350

seq1  ATTTGGACCATTTGGGTGTCCTTATCCATCCAGTTCTTCTTGCCTTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGACCATTTGGGTGTCCTTATCCATCCAGTTCTTCTTGCCTTGGGT  400

seq1  TCTGTTTCCTTTTTGGTCATTGTTGCTTTCCAAATGTTGTTCTAGGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCCTTTTTGGTCATTGTTGCTTTCCAAATGTTGTTCTAGGCAGG  450

seq1  GAAGCCTAGAAACAAGGCAGGGACTTTATCCTTCTCTGAAGGTCCCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTAGAAACAAGGCAGGGACTTTATCCTTCTCTGAAGGTCCCTCAG  500

seq1  CATCCTATCAAGGATGCCAACAGAATGGAGACTTCTGATATCTGGTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTATCAAGGATGCCAACAGAATGGAGACTTCTGATATCTGGTCCCA  550

seq1  ACCACAGCAAACTGTCCAAGGCCTCTTCTGCTTTTTATGTGATCCTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCAAACTGTCCAAGGCCTCTTCTGCTTTTTATGTGATCCTTTAG  600

seq1  CTAATAGCTATCAGAGAGAGGCAGAGGCGAAGGAAGTCCAATGTGTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGCTATCAGAGAGAGGCAGAGGCGAAGGAAGTCCAATGTGTGGTT  650

seq1  TAGTGACTGGATTGAAATACTGCAGCTCTCCAGGATGCTGTCTGTTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACTGGATTGAAATACTGCAGCTCTCCAGGATGCTGTCTGTTGTTC  700

seq1  CACCAAGTTGAGAAACACATGTTACCTGTCTCATTCTGATGGGAATGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGTTGAGAAACACATGTTACCTGTCTCATTCTGATGGGAATGAAT  750

seq1  TTTCTATCCTGGAGTCCTGTTTGCAAGGAAGATGTGAGAAAAGGCCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCCTGGAGTCCTGTTTGCAAGGAAGATGTGAGAAAAGGCCTGAG  800

seq1  AGAAAGAAACTTGG-ATTAGAAGTTAGTCTGCCAGACTTGTCATTGG-TA  848
      |||||||||||||| ||||||| |||||||| ||||||||||||||| ||
seq2  AGAAAGAAACTTGGAATTAGAAATTAGTCTGTCAGACTTGTCATTGGTTA  850

seq1  CCCACTAATAAATAGTCCCAGGCTGC-TGTGCCCTTTTCTGTAAATCAAG  897
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCCACTAATAAATAGTCCCAGGCTGCTTGTGCCCTTTTCTGTAAATCAAG  900

seq1  ACTGGCCAGTCAACTTCAGAGAAACTGGGAAGCCCTTCCCACCACTGGT-  946
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  ACTGGCCAGTCAACTTCAGAG-AACTGGGAAGCCCTTCCCACCACTGGTC  949

seq1  CTTCTCCCTGCAGGTAGCCTCATTTGCAAATAATGTCACC-TCTATGGAC  995
      ||||| ||||||||||||||||||||| ||||||| | || |||||||||
seq2  CTTCT-CCTGCAGGTAGCCTCATTTGCCAATAATGGCCCCTTCTATGGAC  998

seq1  CATACTTTCTTCTACTTCAGGGAAAGAGGGATGGCCTGTTCTGTAGGTTT  1045
      ||||||||||||||||||  ||||||| |||||||||| |||||||| ||
seq2  CATACTTTCTTCTACTTCGAGGAAAGAAGGATGGCCTG-TCTGTAGG-TT  1046

seq1  CTAAGTGAACAACGGCTGTACAG-AAGTAGAAGCAAGCCCTGGGAGTGCA  1094
      ||| |||| ||   ||||||||| ||||| | ||| || | |||||||||
seq2  CTAGGTGACCA--CGCTGTACAGAAAGTAAAGGCAGGCTC-GGGAGTGCA  1093

seq1  TCCATCTT-CACTCTGCCATTAAATCAG  1121
      |||||||| |||| ||||| ||||||||
seq2  TCCATCTTCCACT-TGCCA-TAAATCAG  1119